Conservation of cofitness between PS417_25270 and PS417_20690 in Pseudomonas simiae WCS417

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_25270 NrdR family transcriptional regulator 1.0 PS417_20690 chemotaxis protein 0.27 12
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS26905 transcriptional regulator NrdR 0.99 PFLU_RS22310 methyl-accepting chemotaxis protein low > 109
Pseudomonas fluorescens SBW25 0.98 PFLU_RS26905 transcriptional regulator NrdR 0.99 PFLU_RS22310 methyl-accepting chemotaxis protein low > 109
Pseudomonas sp. RS175 0.98 PFR28_03950 Transcriptional repressor NrdR 0.92 PFR28_01097 Aerotaxis receptor low > 88
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_14925 NrdR family transcriptional regulator 0.92 AO356_02395 chemotaxis protein — —
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_4918 Ribonucleotide reductase transcriptional regulator NrdR 0.91 Pf6N2E2_2303 Aerotaxis receptor Aer low > 103
Pseudomonas syringae pv. syringae B728a 0.97 Psyr_4463 Protein of unknown function DUF193 0.86 Psyr_3406 PAS low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.97 Psyr_4463 Protein of unknown function DUF193 0.86 Psyr_3406 PAS low > 86
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_1312 Ribonucleotide reductase transcriptional regulator NrdR 0.92 PfGW456L13_4054 Aerotaxis receptor Aer low > 87
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_06720 NrdR family transcriptional regulator 0.95 AO353_00575 chemotaxis protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.96 Pf1N1B4_2648 Ribonucleotide reductase transcriptional regulator NrdR 0.94 Pf1N1B4_3886 Aerotaxis receptor Aer — —
Pseudomonas putida KT2440 0.94 PP_0513 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP 0.87 PP_2111 putative aerotaxis receptor low > 96
Pseudomonas sp. S08-1 0.94 OH686_15690 transcriptional regulator NrdR 0.80 OH686_02165 Aerotaxis sensor receptor protein low > 80
Pseudomonas stutzeri RCH2 0.94 Psest_3553 transcriptional regulator NrdR 0.71 Psest_2522 PAS domain S-box — —
Marinobacter adhaerens HP15 0.78 HP15_491 transcriptional repressor NrdR 0.42 HP15_3915 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor low > 73
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_11565 transcriptional regulator NrdR 0.35 CSW01_02710 chemotaxis protein low > 62
Shewanella loihica PV-4 0.70 Shew_1186 transcriptional regulator NrdR (RefSeq) 0.28 Shew_2577 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) low > 60
Shewanella oneidensis MR-1 0.70 SO3470 conserved hypothetical protein TIGR00244 (NCBI ptt file) 0.33 SO0584 methyl-accepting chemotaxis protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.70 Shewana3_1095 nrdR transcriptional regulator NrdR (RefSeq) 0.34 Shewana3_0582 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) low > 73
Dickeya dianthicola ME23 0.70 DZA65_RS05885 transcriptional regulator NrdR 0.23 DZA65_RS12820 PAS domain-containing protein low > 75
Dickeya dianthicola 67-19 0.70 HGI48_RS05560 transcriptional regulator NrdR 0.23 HGI48_RS12260 PAS domain-containing protein low > 71
Dickeya dadantii 3937 0.70 DDA3937_RS05500 transcriptional regulator NrdR 0.22 DDA3937_RS17070 PAS domain-containing protein low > 74
Escherichia coli ECRC102 0.69 NIAGMN_06515 nrdR transcriptional regulator NrdR 0.22 NIAGMN_16395 aer aerotaxis sensor receptor Aer — —
Escherichia coli ECOR38 0.69 HEPCGN_07085 nrdR transcriptional regulator NrdR 0.22 HEPCGN_17480 aer aerotaxis sensor receptor Aer low > 85
Escherichia coli ECRC98 0.69 JDDGAC_12115 nrdR transcriptional regulator NrdR 0.22 JDDGAC_22265 aer aerotaxis sensor receptor Aer — —
Escherichia fergusonii Becca 0.69 EFB2_03644 Transcriptional repressor NrdR 0.22 EFB2_00739 Aerotaxis receptor low > 86
Escherichia coli ECRC99 0.69 KEDOAH_19505 nrdR transcriptional regulator NrdR 0.22 KEDOAH_09515 aer aerotaxis sensor receptor Aer — —
Escherichia coli ECRC101 0.69 OKFHMN_08460 nrdR transcriptional regulator NrdR 0.22 OKFHMN_18630 aer aerotaxis sensor receptor Aer — —
Escherichia coli ECRC101 0.69 MCAODC_27685 nrdR transcriptional regulator NrdR 0.22 MCAODC_09145 aer aerotaxis sensor receptor Aer — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.69 OHPLBJKB_03263 Transcriptional repressor NrdR 0.22 OHPLBJKB_00630 Aerotaxis receptor low > 73
Escherichia coli ECRC62 0.69 BNILDI_22820 nrdR transcriptional regulator NrdR 0.22 BNILDI_01095 aer aerotaxis sensor receptor Aer — —
Escherichia coli BW25113 0.69 b0413 ybaD hypothetical protein (NCBI) 0.22 b3072 aer fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component (NCBI) — —
Escherichia coli Nissle 1917 0.69 ECOLIN_RS02500 transcriptional regulator NrdR 0.22 ECOLIN_RS17730 aerotaxis sensor receptor Aer — —
Escherichia coli BL21 0.69 ECD_00361 Nrd regulon repressor 0.22 ECD_02941 fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component low > 60
Escherichia coli ECOR27 0.69 NOLOHH_01405 nrdR transcriptional regulator NrdR 0.22 NOLOHH_10420 aer aerotaxis sensor receptor Aer — —
Shewanella amazonensis SB2B 0.69 Sama_1015 nrdR transcriptional regulator NrdR (RefSeq) 0.29 Sama_0532 putative methyl-accepting chemotaxis sensory transducer (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.69 MIT1002_02701 Transcriptional repressor NrdR 0.36 MIT1002_03822 Aerotaxis receptor low > 70
Pectobacterium carotovorum WPP14 0.69 HER17_RS15965 transcriptional regulator NrdR 0.22 HER17_RS09640 PAS domain-containing methyl-accepting chemotaxis protein low > 75
Pantoea sp. MT58 0.69 IAI47_14775 transcriptional regulator NrdR 0.27 IAI47_17690 PAS domain-containing protein low > 76
Enterobacter sp. TBS_079 0.68 MPMX20_01005 Transcriptional repressor NrdR 0.22 MPMX20_03981 Aerotaxis receptor low > 85
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2557 transcriptional regulator NrdR 0.23 EX28DRAFT_1048 PAS domain S-box — —
Rahnella sp. WP5 0.67 EX31_RS22120 transcriptional regulator NrdR 0.25 EX31_RS01840 PAS domain-containing protein low > 89
Variovorax sp. SCN45 0.54 GFF561 Ribonucleotide reductase transcriptional regulator NrdR 0.24 GFF5729 Methyl-accepting chemotaxis sensor/transducer protein low > 127
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS15490 NrdR family transcriptional regulator 0.25 RR42_RS01615 aerotaxis receptor Aer low > 128
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS12890 transcriptional regulator NrdR 0.25 RALBFv3_RS17985 aerotaxis receptor low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS00675 transcriptional regulator NrdR 0.25 UW163_RS21145 aerotaxis receptor — —
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS08950 transcriptional regulator NrdR 0.24 ABZR87_RS18850 PAS domain-containing methyl-accepting chemotaxis protein low > 80
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS06145 NrdR family transcriptional regulator 0.25 HSERO_RS02230 methyl-accepting chemotaxis protein low > 78
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_04727 transcriptional repressor NrdR 0.23 H281DRAFT_03551 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor low > 103
Ralstonia solanacearum GMI1000 0.52 RS_RS03665 transcriptional regulator NrdR 0.25 RS_RS23045 PAS domain S-box protein low > 80
Ralstonia solanacearum PSI07 0.52 RPSI07_RS20335 transcriptional regulator NrdR 0.24 RPSI07_RS05620 PAS domain S-box protein low > 81
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS03730 transcriptional repressor NrdR 0.24 BPHYT_RS34360 methyl-accepting chemotaxis protein low > 109
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS26230 transcriptional regulator NrdR 0.25 QEN71_RS17085 PAS domain-containing methyl-accepting chemotaxis protein low > 153
Dechlorosoma suillum PS 0.48 Dsui_1266 transcriptional regulator NrdR 0.30 Dsui_3238 PAS domain S-box low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF5153 Ribonucleotide reductase transcriptional regulator NrdR 0.25 GFF3536 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) low > 90
Castellaniella sp019104865 MT123 0.45 ABCV34_RS10550 transcriptional regulator NrdR 0.22 ABCV34_RS09925 methyl-accepting chemotaxis protein low > 48
Acidovorax sp. GW101-3H11 0.42 Ac3H11_2922 Ribonucleotide reductase transcriptional regulator NrdR 0.23 Ac3H11_2704 Aerotaxis sensor receptor protein — —

Not shown: 32 genomes with orthologs for PS417_25270 only; 1 genomes with orthologs for PS417_20690 only