Conservation of cofitness between PS417_23375 and PS417_01955 in Pseudomonas simiae WCS417

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_23375 cytochrome C oxidase 1.0 PS417_01955 peptidase 0.39 11
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS25205 cytochrome o ubiquinol oxidase subunit IV 0.98 PFLU_RS02000 penicillin-binding protein 1A low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS25205 cytochrome o ubiquinol oxidase subunit IV 0.98 PFLU_RS02000 penicillin-binding protein 1A low > 109
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_970 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.88 Pf1N1B4_1544 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 87
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_5320 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.84 Pf6N2E2_3761 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_16975 cytochrome C oxidase 0.88 AO356_09420 peptidase low > 104
Pseudomonas sp. RS175 0.82 PFR28_00245 Cytochrome bo(3) ubiquinol oxidase subunit 4 0.87 PFR28_05006 Penicillin-binding protein 1A low > 88
Pseudomonas fluorescens GW456-L13 0.80 PfGW456L13_4933 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.85 PfGW456L13_282 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_15465 cytochrome C oxidase 0.88 AO353_12470 peptidase low > 101
Pseudomonas putida KT2440 0.68 PP_0815 cytochrome bo terminal oxidase subunit IV 0.81 PP_5084 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase — —
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_1144 cytochrome bo3 quinol oxidase subunit 4 0.83 Psyr_0402 Peptidoglycan glycosyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_1144 cytochrome bo3 quinol oxidase subunit 4 0.83 Psyr_0402 Peptidoglycan glycosyltransferase — —
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS32585 cytochrome C oxidase 0.34 RR42_RS19040 penicillin-binding protein — —
Dickeya dadantii 3937 0.53 DDA3937_RS05600 cytochrome o ubiquinol oxidase subunit IV 0.38 DDA3937_RS19580 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Dickeya dianthicola ME23 0.53 DZA65_RS05970 cytochrome o ubiquinol oxidase subunit IV 0.37 DZA65_RS20795 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Dickeya dianthicola 67-19 0.53 HGI48_RS05645 cytochrome o ubiquinol oxidase subunit IV 0.37 HGI48_RS19710 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Pectobacterium carotovorum WPP14 0.52 HER17_RS15890 cytochrome o ubiquinol oxidase subunit IV 0.38 HER17_RS01745 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 75
Rahnella sp. WP5 0.49 EX31_RS22205 cytochrome o ubiquinol oxidase subunit IV 0.37 EX31_RS04750 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 89
Serratia liquefaciens MT49 0.49 IAI46_04970 cytochrome o ubiquinol oxidase subunit IV 0.37 IAI46_23740 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 86
Pantoea sp. MT58 0.49 IAI47_14695 cytochrome o ubiquinol oxidase subunit IV 0.38 IAI47_01860 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 76
Acinetobacter radioresistens SK82 0.48 MPMX26_01159 Cytochrome bo(3) ubiquinol oxidase subunit 4 0.39 MPMX26_02817 Penicillin-binding protein 1A low > 36
Shewanella loihica PV-4 0.48 Shew_0369 cytochrome C oxidase subunit IV (RefSeq) 0.37 Shew_0207 1A family penicillin-binding protein (RefSeq) — —
Erwinia tracheiphila SCR3 0.47 LU632_RS18390 cytochrome o ubiquinol oxidase subunit IV 0.37 LU632_RS22900 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Shewanella sp. ANA-3 0.47 Shewana3_4034 cytochrome C oxidase subunit IV (RefSeq) 0.38 Shewana3_3900 1A family penicillin-binding protein (RefSeq) — —
Escherichia fergusonii Becca 0.47 EFB2_03628 Cytochrome bo(3) ubiquinol oxidase subunit 4 0.37 EFB2_00432 Penicillin-binding protein 1A low > 86
Escherichia coli ECRC102 0.46 NIAGMN_06430 cyoD cytochrome o ubiquinol oxidase subunit III 0.37 NIAGMN_14850 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli ECRC101 0.46 MCAODC_27600 cyoD cytochrome o ubiquinol oxidase subunit III 0.37 MCAODC_07610 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli ECOR27 0.46 NOLOHH_01310 cyoD cytochrome o ubiquinol oxidase subunit III 0.37 NOLOHH_08870 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 57
Escherichia coli ECOR38 0.46 HEPCGN_06990 cyoD cytochrome o ubiquinol oxidase subunit III 0.37 HEPCGN_15900 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 85
Escherichia coli ECRC62 0.46 BNILDI_22725 cyoD cytochrome o ubiquinol oxidase subunit III 0.37 BNILDI_02650 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF4343 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.38 GFF623 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_03244 Cytochrome bo(3) ubiquinol oxidase subunit 4 0.37 OHPLBJKB_00307 Penicillin-binding protein 1A low > 73
Escherichia coli BL21 0.46 ECD_00380 cytochrome o ubiquinol oxidase subunit IV 0.37 ECD_03248 penicillin-binding protein 1a, murein transglycosylase and transpeptidase low > 60
Escherichia coli ECRC98 0.46 JDDGAC_12030 cyoD cytochrome o ubiquinol oxidase subunit III 0.37 JDDGAC_20710 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli BW25113 0.46 b0429 cyoD cytochrome o ubiquinol oxidase subunit IV (NCBI) 0.37 b3396 mrcA peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) low > 76
Escherichia coli ECRC101 0.46 OKFHMN_08375 cyoD cytochrome o ubiquinol oxidase subunit III 0.37 OKFHMN_17080 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli ECRC99 0.46 KEDOAH_19590 cyoD cytochrome o ubiquinol oxidase subunit III 0.37 KEDOAH_11060 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Alteromonas macleodii MIT1002 0.46 MIT1002_03926 Cytochrome o ubiquinol oxidase protein CyoD 0.36 MIT1002_00454 Penicillin-binding protein 1A low > 70
Escherichia coli Nissle 1917 0.46 ECOLIN_RS02580 cytochrome o ubiquinol oxidase subunit IV 0.37 ECOLIN_RS19395 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 52
Brevundimonas sp. GW460-12-10-14-LB2 0.45 A4249_RS04460 cytochrome o ubiquinol oxidase subunit IV 0.26 A4249_RS04500 penicillin-binding protein 1A — —
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.3814.1 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.37 Xcc-8004.1196.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) — —
Ralstonia solanacearum GMI1000 0.45 RS_RS14595 cytochrome o ubiquinol oxidase subunit IV 0.33 RS_RS14915 penicillin-binding protein 1A — —
Enterobacter sp. TBS_079 0.45 MPMX20_01020 Cytochrome bo(3) ubiquinol oxidase subunit 4 0.38 MPMX20_04284 Penicillin-binding protein 1A low > 85
Enterobacter asburiae PDN3 0.45 EX28DRAFT_2542 cytochrome o ubiquinol oxidase subunit IV 0.37 EX28DRAFT_4146 penicillin-binding protein, 1A family — —
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS02320 cytochrome o ubiquinol oxidase subunit IV 0.34 ABZR87_RS02625 penicillin-binding protein 1A — —
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_01848 quinol cytochrome oxidase polypeptide IV 0.26 CCNA_01951 multimodular transpeptidase-transglycosylase PbpY low > 67
Caulobacter crescentus NA1000 0.45 CCNA_01848 quinol cytochrome oxidase polypeptide IV 0.26 CCNA_01951 multimodular transpeptidase-transglycosylase PbpY low > 66
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS24930 cytochrome C oxidase subunit III 0.35 BPHYT_RS17915 penicillin-binding protein 1A — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS36885 cytochrome o ubiquinol oxidase subunit IV 0.36 QEN71_RS28065 penicillin-binding protein 1A — —
Klebsiella michiganensis M5al 0.43 BWI76_RS06480 cytochrome o ubiquinol oxidase subunit IV 0.38 BWI76_RS26125 carboxypeptidase/penicillin-binding protein 1A — —
Ralstonia solanacearum UW163 0.40 UW163_RS06980 cytochrome o ubiquinol oxidase subunit IV 0.33 UW163_RS06645 penicillin-binding protein 1A — —
Sinorhizobium meliloti 1021 0.40 SM_b22024 cytochrome O ubiquinol oxidase CyoD 0.26 SMc01334 penicillin-binding 1A transmembrane protein — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS06645 cytochrome o ubiquinol oxidase subunit IV 0.33 RALBFv3_RS06970 penicillin-binding protein 1A — —
Variovorax sp. SCN45 0.39 GFF5675 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.32 GFF3310 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 127
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_03429 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) 0.35 H281DRAFT_05609 penicillin-binding protein 1A low > 103
Ralstonia solanacearum PSI07 0.38 RPSI07_RS10580 cytochrome o ubiquinol oxidase subunit IV 0.33 RPSI07_RS10265 penicillin-binding protein 1A — —
Agrobacterium fabrum C58 0.37 Atu0139 cytochrome o ubiquinol oxidase subunit IV 0.28 Atu1341 penicillin-binding protein 1a — —
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS07610 cytochrome o ubiquinol oxidase subunit IV 0.42 ABZR86_RS11815 penicillin-binding protein 1A low > 74
Variovorax sp. OAS795 0.36 ABID97_RS07625 cytochrome o ubiquinol oxidase subunit IV 0.32 ABID97_RS02790 penicillin-binding protein 1A low > 91
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_1563 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) 0.22 Ga0059261_2697 Membrane carboxypeptidase/penicillin-binding protein low > 68
Lysobacter sp. OAE881 0.35 ABIE51_RS09780 cytochrome o ubiquinol oxidase subunit IV 0.38 ABIE51_RS17190 penicillin-binding protein 1A low > 62
Paraburkholderia graminis OAS925 0.35 ABIE53_005343 cytochrome o ubiquinol oxidase operon protein cyoD 0.35 ABIE53_003746 penicillin-binding protein 1A — —
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3144 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) 0.32 Ac3H11_4700 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) — —
Rhizobium sp. OAE497 0.35 ABIE40_RS20875 cytochrome o ubiquinol oxidase subunit IV 0.28 ABIE40_RS07555 penicillin-binding protein 1A — —
Bosea sp. OAE506 0.35 ABIE41_RS21035 cytochrome o ubiquinol oxidase subunit IV 0.28 ABIE41_RS16150 penicillin-binding protein 1A 0.48 58

Not shown: 0 genomes with orthologs for PS417_23375 only; 32 genomes with orthologs for PS417_01955 only