Conservation of cofitness between GFF670 and GFF3301 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF670 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 1.0 GFF3301 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) 0.63 4
Escherichia coli HS(pFamp)R (ATCC 700891) 0.87 OHPLBJKB_02939 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.91 OHPLBJKB_02652 Bifunctional protein PutA low > 73
Escherichia coli BW25113 0.87 b0774 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) 0.91 b1014 putA fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (NCBI) low > 76
Escherichia coli ECRC62 0.87 BNILDI_21045 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.91 BNILDI_19670 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase — —
Escherichia coli ECOR27 0.87 NOLOHH_22775 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.91 NOLOHH_21505 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 57
Escherichia coli ECRC102 0.86 NIAGMN_04450 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.91 NIAGMN_23730 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase — —
Escherichia coli ECRC99 0.86 KEDOAH_21505 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.91 KEDOAH_23140 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase — —
Escherichia coli BL21 0.86 ECD_00741 7,8-diaminopelargonic acid synthase, PLP-dependent 0.91 ECD_01017 fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase low > 60
Escherichia coli ECRC101 0.86 MCAODC_25620 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.91 MCAODC_23990 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.86 OKFHMN_06405 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.91 OKFHMN_04605 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase — —
Escherichia coli ECOR38 0.86 HEPCGN_01635 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.91 HEPCGN_23535 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 85
Escherichia fergusonii Becca 0.86 EFB2_03331 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.91 EFB2_03066 Bifunctional protein PutA low > 86
Escherichia coli ECRC98 0.86 JDDGAC_10040 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.91 JDDGAC_08215 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase — —
Escherichia coli Nissle 1917 0.86 ECOLIN_RS04125 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.91 ECOLIN_RS05290 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.41 34
Klebsiella michiganensis M5al 0.85 BWI76_RS08755 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.88 BWI76_RS10795 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 92
Enterobacter sp. TBS_079 0.85 MPMX20_01402 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.89 MPMX20_01702 Bifunctional protein PutA low > 85
Enterobacter asburiae PDN3 0.85 EX28DRAFT_2217 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.89 EX28DRAFT_1911 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) low > 76
Dickeya dadantii 3937 0.76 DDA3937_RS08505 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.74 DDA3937_RS20115 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 74
Dickeya dianthicola 67-19 0.75 HGI48_RS08670 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.73 HGI48_RS20255 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 71
Serratia liquefaciens MT49 0.75 IAI46_06520 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.80 IAI46_15745 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 86
Dickeya dianthicola ME23 0.75 DZA65_RS08960 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.73 DZA65_RS21300 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 75
Pectobacterium carotovorum WPP14 0.75 HER17_RS13465 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.72 HER17_RS01110 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 75
Rahnella sp. WP5 0.74 EX31_RS23690 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.79 EX31_RS09420 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 89
Erwinia tracheiphila SCR3 0.73 LU632_RS09125 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.76 LU632_RS13740 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase — —
Pantoea sp. MT58 0.72 IAI47_13535 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.80 IAI47_08195 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 76
Alteromonas macleodii MIT1002 0.64 MIT1002_01378 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.38 MIT1002_00637 Bifunctional protein PutA low > 70
Acinetobacter radioresistens SK82 0.57 MPMX26_02454 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.53 MPMX26_01466 Bifunctional protein PutA low > 36
Phaeobacter inhibens DSM 17395 0.49 PGA1_c09150 adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA 0.35 PGA1_c11750 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 62
Castellaniella sp019104865 MT123 0.41 ABCV34_RS15300 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.57 ABCV34_RS05285 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 48
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_2377 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.73 Pf1N1B4_1489 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) low > 87
Pseudomonas sp. RS175 0.34 PFR28_04208 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.73 PFR28_05053 Bifunctional protein PutA low > 88
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_13570 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.73 AO356_09015 transcriptional regulator low > 104
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0454 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme 0.71 Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase low > 86
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_08045 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.74 AO353_12810 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0454 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme 0.71 Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase low > 86
Pseudomonas sp. S08-1 0.34 OH686_10850 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.69 OH686_06735 Transcriptional repressor of PutA and PutP / Proline dehydrogenase / Delta-1-pyrroline-5-carboxylate dehydrogenase low > 80
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_4631 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.73 Pf6N2E2_3685 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) low > 103
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_1044 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.74 PfGW456L13_223 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) low > 87
Pseudomonas putida KT2440 0.33 PP_4984 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.74 PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase low > 96
Marinobacter adhaerens HP15 0.33 HP15_2925 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.36 HP15_2688 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 73
Pseudomonas fluorescens SBW25 0.33 PFLU_RS28195 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.73 PFLU_RS02230 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 109
Pseudomonas simiae WCS417 0.33 PS417_26540 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.73 PS417_02175 transcriptional regulator low > 88
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS28195 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.73 PFLU_RS02230 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 109
Azospirillum brasilense Sp245 0.33 AZOBR_RS31120 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.53 AZOBR_RS23695 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 97
Variovorax sp. SCN45 0.31 GFF145 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.60 GFF5175 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.5.2) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) low > 127
Agrobacterium fabrum C58 0.30 Atu4000 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.49 Atu4157 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase low > 89
Paraburkholderia graminis OAS925 0.30 ABIE53_000580 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.59 ABIE53_000244 RHH-type proline utilization regulon transcriptional repressor/proline dehydrogenase/delta 1-pyrroline-5-carboxylate dehydrogenase low > 113
Rhizobium sp. OAE497 0.30 ABIE40_RS21060 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.50 ABIE40_RS23445 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 107
Paraburkholderia bryophila 376MFSha3.1 0.29 H281DRAFT_02094 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.63 H281DRAFT_02404 L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase low > 103
Ralstonia solanacearum PSI07 0.29 RPSI07_RS16705 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.66 RPSI07_RS08540 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 81
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS02165 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.62 BPHYT_RS19355 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase low > 109
Ralstonia sp. UNC404CL21Col 0.29 ABZR87_RS12335 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.67 ABZR87_RS03970 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 80
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS00815 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.66 RALBFv3_RS08725 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 76
Ralstonia solanacearum UW163 0.29 UW163_RS14150 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.66 UW163_RS04885 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase — —
Ralstonia solanacearum GMI1000 0.29 RS_RS07430 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.67 RS_RS16540 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 80
Sphingomonas koreensis DSMZ 15582 0.29 Ga0059261_3674 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.48 Ga0059261_3926 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) low > 68
Acidovorax sp. GW101-3H11 0.28 Ac3H11_3828 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.60 Ac3H11_2850 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 79
Paraburkholderia sabiae LMG 24235 0.28 QEN71_RS01100 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.62 QEN71_RS29240 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.28 HSERO_RS12250 adenosylmethionine--8-amino-7-oxononanoate aminotransferase 0.50 HSERO_RS00905 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 78
Cupriavidus basilensis FW507-4G11 0.26 RR42_RS00925 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA 0.67 RR42_RS20125 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 128
Dinoroseobacter shibae DFL-12 0.21 Dshi_1446 aminotransferase class-III (RefSeq) 0.36 Dshi_2311 delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq) low > 64
Azospirillum sp. SherDot2 0.20 MPMX19_02440 Putrescine--pyruvate aminotransferase 0.52 MPMX19_05932 Bifunctional protein PutA low > 112
Rhodospirillum rubrum S1H 0.19 Rru_A1254 Aminotransferase class-III (NCBI) 0.36 Rru_A0656 delta-1-pyrroline-5-carboxylate dehydrogenase 3 (NCBI) low > 58

Not shown: 33 genomes with orthologs for GFF670 only; 1 genomes with orthologs for GFF3301 only