Conservation of cofitness between GFF4333 and GFF2806 in Hydrogenophaga sp. GW460-11-11-14-LB1

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF4333 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) 1.0 GFF2806 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.59 10
Acidovorax sp. GW101-3H11 0.88 Ac3H11_2914 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) 0.62 Ac3H11_788 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) — —
Variovorax sp. SCN45 0.87 GFF232 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) 0.59 GFF5553 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) — —
Variovorax sp. OAS795 0.86 ABID97_RS16535 arginine/lysine/ornithine decarboxylase 0.61 ABID97_RS01555 pyrroline-5-carboxylate reductase — —
Herbaspirillum seropedicae SmR1 0.78 HSERO_RS17280 lysine decarboxylase 0.41 HSERO_RS18990 pyrroline-5-carboxylate reductase — —
Dechlorosoma suillum PS 0.74 Dsui_1245 arginine/lysine/ornithine decarboxylase 0.43 Dsui_0602 pyrroline-5-carboxylate reductase — —
Ralstonia solanacearum GMI1000 0.74 RS_RS11875 lysine decarboxylase 0.50 RS_RS13440 pyrroline-5-carboxylate reductase — —
Ralstonia solanacearum PSI07 0.74 RPSI07_RS13045 lysine decarboxylase 0.46 RPSI07_RS11720 pyrroline-5-carboxylate reductase — —
Ralstonia solanacearum UW163 0.74 UW163_RS09345 lysine decarboxylase 0.47 UW163_RS08045 pyrroline-5-carboxylate reductase — —
Ralstonia solanacearum IBSBF1503 0.74 RALBFv3_RS04325 lysine decarboxylase 0.47 RALBFv3_RS05580 pyrroline-5-carboxylate reductase — —
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS16180 arginine/lysine/ornithine decarboxylase 0.49 ABZR87_RS01230 pyrroline-5-carboxylate reductase — —
Cupriavidus basilensis FW507-4G11 0.74 RR42_RS15940 lysine decarboxylase 0.48 RR42_RS17360 pyrroline-5-carboxylate reductase — —
Castellaniella sp019104865 MT123 0.73 ABCV34_RS08900 arginine/lysine/ornithine decarboxylase 0.41 ABCV34_RS03610 pyrroline-5-carboxylate reductase — —
Paraburkholderia graminis OAS925 0.73 ABIE53_001270 arginine decarboxylase 0.46 ABIE53_000840 pyrroline-5-carboxylate reductase — —
Paraburkholderia bryophila 376MFSha3.1 0.73 H281DRAFT_00160 ornithine decarboxylase 0.45 H281DRAFT_04679 pyrroline-5-carboxylate reductase — —
Paraburkholderia sabiae LMG 24235 0.73 QEN71_RS25000 arginine/lysine/ornithine decarboxylase 0.45 QEN71_RS26600 pyrroline-5-carboxylate reductase — —
Burkholderia phytofirmans PsJN 0.72 BPHYT_RS04980 lysine decarboxylase 0.45 BPHYT_RS03490 pyrroline-5-carboxylate reductase — —
Rhizobium sp. OAE497 0.46 ABIE40_RS23760 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein 0.30 ABIE40_RS13005 pyrroline-5-carboxylate reductase low > 107
Sinorhizobium meliloti 1021 0.46 SMa0682 decarboxylase (lysine, ornithine, arginine) 0.28 SMc02677 pyrroline-5-carboxylate reductase low > 103
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_4600 Lysine decarboxylase, inducible (EC 4.1.1.18) 0.38 Pf1N1B4_2341 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) — —
Pseudomonas sp. S08-1 0.45 OH686_03560 Lysine decarboxylase, inducible 0.39 OH686_10980 pyrroline-5-carboxylate reductase low > 80
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_23560 lysine decarboxylase 0.36 AO353_08165 pyrroline-5-carboxylate reductase low > 101
Pseudomonas simiae WCS417 0.45 PS417_12240 lysine decarboxylase 0.37 PS417_26730 pyrroline-5-carboxylate reductase low > 88
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_3336 Lysine decarboxylase, inducible (EC 4.1.1.18) 0.37 PfGW456L13_1010 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) low > 87
Pseudomonas fluorescens SBW25 0.45 PFLU_RS12930 lysine decarboxylase 0.38 PFLU_RS28375 pyrroline-5-carboxylate reductase — —
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS12930 lysine decarboxylase 0.38 PFLU_RS28375 pyrroline-5-carboxylate reductase — —
Pseudomonas stutzeri RCH2 0.44 Psest_2075 Arginine/lysine/ornithine decarboxylases 0.37 Psest_0283 pyrroline-5-carboxylate reductase — —
Pseudomonas putida KT2440 0.42 PP_4140 lysine decarboxylase 0.38 PP_5095 pyrroline-5-carboxylate reductase low > 96
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF1473 Arginine decarboxylase, catabolic (EC 4.1.1.19) 0.24 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) low > 78
Escherichia coli ECRC101 0.32 MCAODC_03060 adiA arginine decarboxylase 0.25 MCAODC_27835 proC pyrroline-5-carboxylate reductase — —
Escherichia fergusonii Becca 0.32 EFB2_04465 Biodegradative arginine decarboxylase 0.25 EFB2_03670 Pyrroline-5-carboxylate reductase low > 86
Escherichia coli ECRC102 0.32 NIAGMN_10395 adiA arginine decarboxylase 0.25 NIAGMN_06665 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECRC101 0.32 OKFHMN_12550 adiA arginine decarboxylase 0.25 OKFHMN_08610 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECRC98 0.32 JDDGAC_16185 adiA arginine decarboxylase 0.25 JDDGAC_12265 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECRC99 0.32 KEDOAH_15615 adiA arginine decarboxylase 0.25 KEDOAH_19355 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECOR38 0.32 HEPCGN_11185 adiA arginine decarboxylase 0.25 HEPCGN_07250 proC pyrroline-5-carboxylate reductase low > 85
Escherichia coli BW25113 0.32 b4117 adiA biodegradative arginine decarboxylase (RefSeq) 0.25 b0386 proC pyrroline-5-carboxylate reductase (NCBI) low > 76
Escherichia coli ECRC62 0.32 BNILDI_06675 adiA arginine decarboxylase 0.25 BNILDI_22950 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECOR27 0.32 NOLOHH_04815 adiA arginine decarboxylase 0.25 NOLOHH_01535 proC pyrroline-5-carboxylate reductase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_03927 Biodegradative arginine decarboxylase 0.25 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase low > 73
Escherichia coli BL21 0.32 ECD_04002 lysine decarboxylase, acid-inducible 0.25 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding low > 60
Escherichia coli Nissle 1917 0.32 ECOLIN_RS23825 arginine decarboxylase 0.25 ECOLIN_RS02345 pyrroline-5-carboxylate reductase low > 52
Rahnella sp. WP5 0.32 EX31_RS12950 lysine decarboxylase LdcC 0.31 EX31_RS02690 pyrroline-5-carboxylate reductase low > 89
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_01445 lysine decarboxylase 0.28 CSW01_02450 pyrroline-5-carboxylate reductase low > 62
Serratia liquefaciens MT49 0.32 IAI46_20175 lysine decarboxylase LdcC 0.31 IAI46_21415 pyrroline-5-carboxylate reductase low > 86
Pantoea sp. MT58 0.32 IAI47_15445 lysine decarboxylase LdcC 0.25 IAI47_14945 pyrroline-5-carboxylate reductase low > 76
Klebsiella michiganensis M5al 0.32 BWI76_RS05300 lysine decarboxylase LdcC 0.25 BWI76_RS06170 pyrroline-5-carboxylate reductase — —
Enterobacter asburiae PDN3 0.31 EX28DRAFT_3774 Arginine/lysine/ornithine decarboxylases 0.24 EX28DRAFT_2585 pyrroline-5-carboxylate reductase low > 76
Enterobacter sp. TBS_079 0.31 MPMX20_00870 Constitutive lysine decarboxylase 0.24 MPMX20_00976 Pyrroline-5-carboxylate reductase low > 85
Rhodopseudomonas palustris CGA009 0.29 TX73_010575 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein 0.27 TX73_022630 pyrroline-5-carboxylate reductase — —
Magnetospirillum magneticum AMB-1 0.29 AMB_RS05630 amino acid decarboxylase 0.25 AMB_RS02820 pyrroline-5-carboxylate reductase — —
Azospirillum sp. SherDot2 0.29 MPMX19_05197 Inducible ornithine decarboxylase 0.24 MPMX19_01399 Pyrroline-5-carboxylate reductase — —
Azospirillum brasilense Sp245 0.29 AZOBR_RS27535 amino acid decarboxylase 0.26 AZOBR_RS06245 pyrroline-5-carboxylate reductase — —
Shewanella amazonensis SB2B 0.22 Sama_3334 ornithine decarboxylase (RefSeq) 0.34 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) low > 62
Shewanella sp. ANA-3 0.22 Shewana3_3871 ornithine decarboxylase (RefSeq) 0.33 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.22 SO0314 speF ornithine decarboxylase, inducible (NCBI ptt file) 0.32 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) low > 76
Dickeya dianthicola ME23 0.21 DZA65_RS05225 ornithine decarboxylase 0.32 DZA65_RS18440 pyrroline-5-carboxylate reductase — —
Dickeya dadantii 3937 0.20 DDA3937_RS04870 ornithine decarboxylase 0.32 DDA3937_RS17305 pyrroline-5-carboxylate reductase low > 74
Dickeya dianthicola 67-19 0.20 HGI48_RS04890 ornithine decarboxylase 0.31 HGI48_RS17350 pyrroline-5-carboxylate reductase — —
Pectobacterium carotovorum WPP14 0.20 HER17_RS16680 ornithine decarboxylase 0.30 HER17_RS03805 pyrroline-5-carboxylate reductase — —
Erwinia tracheiphila SCR3 0.20 LU632_RS05390 ornithine decarboxylase 0.23 LU632_RS18995 proC pyrroline-5-carboxylate reductase low > 74
Kangiella aquimarina DSM 16071 0.16 B158DRAFT_0656 Arginine/lysine/ornithine decarboxylases 0.28 B158DRAFT_0197 pyrroline-5-carboxylate reductase low > 40
Alteromonas macleodii MIT1002 0.15 MIT1002_02902 Arginine decarboxylase 0.26 MIT1002_03062 Pyrroline-5-carboxylate reductase low > 70

Not shown: 0 genomes with orthologs for GFF4333 only; 36 genomes with orthologs for GFF2806 only