Conservation of cofitness between Psest_3351 and Psest_1804 in Pseudomonas stutzeri RCH2

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_3351 peptide chain release factor 3 1.0 Psest_1804 Superfamily II DNA and RNA helicases 0.42 3
Pseudomonas syringae pv. syringae B728a 0.94 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.85 Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal — —
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_05420 peptide chain release factor 3 0.85 AO353_19130 RNA helicase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.94 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.85 Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal — —
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_5060 Peptide chain release factor 3 0.85 PfGW456L13_2247 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) — —
Pseudomonas simiae WCS417 0.94 PS417_04030 peptide chain release factor 3 0.85 PS417_08540 RNA helicase — —
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_07285 peptide chain release factor 3 0.85 AO356_03110 RNA helicase — —
Pseudomonas putida KT2440 0.94 PP_0872 Peptide chain release factor 3 0.86 PP_1868 ATP-dependent DEAD-box RNA helicase DeaD — —
Pseudomonas sp. RS175 0.93 PFR28_00118 Peptide chain release factor RF3 0.85 PFR28_00980 ATP-dependent RNA helicase DeaD — —
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS04070 peptide chain release factor 3 0.84 PFLU_RS08490 DEAD/DEAH box helicase low > 109
Pseudomonas fluorescens SBW25 0.93 PFLU_RS04070 peptide chain release factor 3 0.84 PFLU_RS08490 DEAD/DEAH box helicase — —
Pseudomonas sp. S08-1 0.93 OH686_08765 peptide chain release factor 3 0.85 OH686_22545 DEAD-box ATP-dependent RNA helicase DeaD ( CshA) — —
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_3327 Peptide chain release factor 3 0.85 Pf6N2E2_2450 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) — —
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_1130 Peptide chain release factor 3 0.85 Pf1N1B4_265 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) — —
Pantoea sp. MT58 0.71 IAI47_03375 peptide chain release factor 3 0.41 IAI47_16990 DEAD/DEAH family ATP-dependent RNA helicase low > 76
Erwinia tracheiphila SCR3 0.71 LU632_RS02475 prfC peptide chain release factor 3 0.42 LU632_RS21030 DEAD/DEAH family ATP-dependent RNA helicase — —
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_2239 peptide chain release factor 3 0.46 B158DRAFT_1850 ATP-dependent RNA helicase CsdA (EC 5.99.1.-) low > 40
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_03470 peptide chain release factor 3 0.38 CSW01_18185 DEAD/DEAH box family ATP-dependent RNA helicase low > 62
Enterobacter sp. TBS_079 0.70 MPMX20_00673 Peptide chain release factor RF3 0.41 MPMX20_04066 ATP-dependent RNA helicase DeaD low > 85
Serratia liquefaciens MT49 0.70 IAI46_02875 peptide chain release factor 3 0.42 IAI46_01970 DEAD/DEAH family ATP-dependent RNA helicase low > 86
Klebsiella michiganensis M5al 0.70 BWI76_RS04100 peptide chain release factor 3 0.42 BWI76_RS25055 DEAD/DEAH family ATP-dependent RNA helicase — —
Dickeya dianthicola ME23 0.70 DZA65_RS02505 peptide chain release factor 3 0.41 DZA65_RS03270 DEAD/DEAH family ATP-dependent RNA helicase — —
Dickeya dadantii 3937 0.70 DDA3937_RS02445 peptide chain release factor 3 0.41 DDA3937_RS03100 DEAD/DEAH family ATP-dependent RNA helicase low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS02400 peptide chain release factor 3 0.41 HGI48_RS03275 DEAD/DEAH family ATP-dependent RNA helicase — —
Shewanella amazonensis SB2B 0.70 Sama_0968 prfC peptide chain release factor 3 (RefSeq) 0.43 Sama_0512 ATP-dependent RNA helicase DeaD (RefSeq) low > 62
Enterobacter asburiae PDN3 0.70 EX28DRAFT_3583 peptide chain release factor 3 0.42 EX28DRAFT_3211 Superfamily II DNA and RNA helicases — —
Rahnella sp. WP5 0.70 EX31_RS04095 peptide chain release factor 3 0.42 EX31_RS08510 DEAD/DEAH family ATP-dependent RNA helicase — —
Pectobacterium carotovorum WPP14 0.69 HER17_RS19065 peptide chain release factor 3 0.42 HER17_RS18175 DEAD/DEAH family ATP-dependent RNA helicase low > 75
Alteromonas macleodii MIT1002 0.69 MIT1002_01192 Peptide chain release factor 3 0.45 MIT1002_00666 Cold-shock DEAD box protein A low > 70
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF1035 Peptide chain release factor 3 0.41 GFF1504 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) low > 78
Shewanella loihica PV-4 0.69 Shew_2820 prfC peptide chain release factor 3 (RefSeq) 0.43 Shew_0531 DEAD/DEAH box helicase domain-containing protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.69 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) 0.41 Shewana3_3595 DEAD/DEAH box helicase domain-containing protein (RefSeq) 0.52 14
Escherichia coli HS(pFamp)R (ATCC 700891) 0.69 OHPLBJKB_03687 Peptide chain release factor RF3 0.40 OHPLBJKB_00538 ATP-dependent RNA helicase DeaD low > 73
Escherichia coli ECOR27 0.69 NOLOHH_03600 prfC peptide chain release factor 3 0.40 NOLOHH_09955 deaD ATP-dependent RNA helicase DeaD — —
Escherichia coli ECRC62 0.69 BNILDI_08000 prfC peptide chain release factor 3 0.40 BNILDI_01580 deaD ATP-dependent RNA helicase DeaD — —
Escherichia coli ECRC101 0.69 MCAODC_01795 prfC peptide chain release factor 3 0.40 MCAODC_08675 deaD ATP-dependent RNA helicase DeaD — —
Escherichia coli Nissle 1917 0.69 ECOLIN_RS25110 peptide chain release factor 3 0.40 ECOLIN_RS18165 ATP-dependent RNA helicase DeaD low > 52
Escherichia coli ECRC101 0.69 OKFHMN_11280 prfC peptide chain release factor 3 0.40 OKFHMN_18155 deaD ATP-dependent RNA helicase DeaD — —
Escherichia fergusonii Becca 0.69 EFB2_04072 Peptide chain release factor RF3 0.40 EFB2_00661 ATP-dependent RNA helicase DeaD low > 86
Escherichia coli ECRC99 0.69 KEDOAH_16865 prfC peptide chain release factor 3 0.40 KEDOAH_09995 deaD ATP-dependent RNA helicase DeaD — —
Escherichia coli ECRC98 0.69 JDDGAC_14875 prfC peptide chain release factor 3 0.40 JDDGAC_21780 deaD ATP-dependent RNA helicase DeaD — —
Escherichia coli ECOR38 0.69 HEPCGN_09285 prfC peptide chain release factor 3 0.40 HEPCGN_17030 deaD ATP-dependent RNA helicase DeaD low > 85
Escherichia coli BL21 0.69 ECD_04250 peptide chain release factor RF-3 0.40 ECD_03029 ATP-dependent RNA helicase low > 60
Escherichia coli BW25113 0.69 b4375 prfC peptide chain release factor 3 (NCBI) 0.40 b3162 deaD inducible ATP-independent RNA helicase (VIMSS) 0.56 2
Escherichia coli ECRC102 0.69 NIAGMN_09130 prfC peptide chain release factor 3 0.40 NIAGMN_15915 deaD ATP-dependent RNA helicase DeaD — —
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS05380 peptide chain release factor 3 0.46 LRK54_RS02650 DEAD/DEAH box helicase — —
Rhodanobacter denitrificans MT42 0.65 LRK55_RS05155 peptide chain release factor 3 0.46 LRK55_RS02405 DEAD/DEAH box helicase — —
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS19000 peptide chain release factor 3 0.46 ABZR86_RS08990 DEAD/DEAH box helicase — —
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_01430 prfC peptide chain release factor 3 0.46 OKGIIK_09705 ATP-dependent RNA helicase — —
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.1590.1 Peptide chain release factor 3 0.45 Xcc-8004.1841.1 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) — —
Dechlorosoma suillum PS 0.61 Dsui_2418 peptide chain release factor 3 0.44 Dsui_1351 DNA/RNA helicase, superfamily II low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.58 DVU3116 prfC peptide chain release factor 3 (TIGR) 0.36 DVU3310 deaD ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.56 DvMF_2372 prfC peptide chain release factor 3 (RefSeq) 0.33 DvMF_2125 DEAD/DEAH box helicase domain protein (RefSeq) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.50 Echvi_0584 peptide chain release factor 3 0.33 Echvi_3056 Superfamily II DNA and RNA helicases — —
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS04145 peptide chain release factor 3 0.30 HMPREF1078_RS06015 DEAD/DEAH box helicase low > 61
Phocaeicola vulgatus CL09T03C04 0.47 HMPREF1058_RS07935 peptide chain release factor 3 0.32 HMPREF1058_RS11910 DEAD/DEAH box helicase — —
Phocaeicola dorei CL03T12C01 0.47 ABI39_RS00385 peptide chain release factor 3 0.32 ABI39_RS04950 DEAD/DEAH box helicase — —
Bacteroides ovatus ATCC 8483 0.46 BACOVA_04458 peptide chain release factor 3 0.31 BACOVA_00904 DEAD/DEAH box helicase low > 94
Bacteroides thetaiotaomicron VPI-5482 0.46 BT1729 peptide chain release factor 3 (RF-3) (NCBI ptt file) 0.31 BT3303 ATP-dependent RNA helicase (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.46 HMPREF1181_RS05585 peptide chain release factor 3 0.30 HMPREF1181_RS02175 DEAD/DEAH box helicase low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.46 CA265_RS18435 peptide chain release factor 3 0.31 CA265_RS15600 ATP-dependent RNA helicase — —

Not shown: 34 genomes with orthologs for Psest_3351 only; 7 genomes with orthologs for Psest_1804 only