Conservation of cofitness between PS417_26880 and PS417_08190 in Pseudomonas simiae WCS417

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_26880 SAM-dependent methyltransferase 1.0 PS417_08190 membrane protein 0.27 14
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.81 PFLU_RS08190 polysaccharide biosynthesis protein low > 109
Pseudomonas fluorescens SBW25 0.99 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.81 PFLU_RS08190 polysaccharide biosynthesis protein low > 109
Pseudomonas fluorescens GW456-L13 0.99 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI 0.83 PfGW456L13_2191 nucleotide sugar epimerase/dehydratase WbpM low > 87
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_08330 SAM-dependent methyltransferase 0.83 AO353_01970 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI 0.80 Pf6N2E2_2506 nucleotide sugar epimerase/dehydratase WbpM low > 103
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_13260 SAM-dependent methyltransferase 0.81 AO356_03345 hypothetical protein low > 104
Pseudomonas sp. RS175 0.96 PFR28_04274 Ribosomal RNA large subunit methyltransferase I 0.81 PFR28_00932 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase low > 88
Pseudomonas syringae pv. syringae B728a 0.96 Psyr_4764 SAM-dependent methyltransferase 0.80 Psyr_3636 Polysaccharide biosynthesis protein CapD low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.96 Psyr_4764 SAM-dependent methyltransferase 0.80 Psyr_3636 Polysaccharide biosynthesis protein CapD low > 86
Pseudomonas putida KT2440 0.91 PP_5127 ribosomal RNA large subunit methyltransferase I 0.78 PP_1805 Polysaccharide biosynthesis protein low > 96
Pseudomonas sp. S08-1 0.89 OH686_14110 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.72 OH686_20915 nucleotide sugar epimerase/dehydratase WbpM low > 80
Pseudomonas stutzeri RCH2 0.87 Psest_0236 Predicted SAM-dependent methyltransferases 0.72 Psest_1825 Predicted nucleoside-diphosphate sugar epimerases low > 67
Marinobacter adhaerens HP15 0.55 HP15_460 SAM-dependent methyltransferase 0.40 HP15_2383 nucleotide sugar epimerase/dehydratase low > 73
Azospirillum sp. SherDot2 0.39 MPMX19_00203 Ribosomal RNA large subunit methyltransferase I 0.25 MPMX19_01807 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase — —
Magnetospirillum magneticum AMB-1 0.37 AMB_RS22065 class I SAM-dependent rRNA methyltransferase 0.25 AMB_RS00500 polysaccharide biosynthesis protein — —
Rhodospirillum rubrum S1H 0.35 Rru_A3333 hypothetical protein (NCBI) 0.24 Rru_A3656 Polysaccharide biosynthesis protein CapD (NCBI) — —
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_06820 ribosomal RNA large subunit methyltransferase I 0.40 CSW01_01350 polysaccharide biosynthesis protein low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS19815 RlmI/RlmK family 23S rRNA methyltransferase 0.25 CA265_RS19185 polysaccharide biosynthesis protein 0.32 59
Shewanella oneidensis MR-1 0.26 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) 0.44 SO3171 polysaccharide biosynthesis protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.26 Sama_2965 putative SAM-dependent methyltransferase (RefSeq) 0.44 Sama_2244 polysaccharide biosynthesis protein (RefSeq) low > 62
Enterobacter asburiae PDN3 0.26 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases 0.46 EX28DRAFT_0519 Predicted nucleoside-diphosphate sugar epimerases low > 76
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS22040 class I SAM-dependent rRNA methyltransferase 0.26 ABZR88_RS12725 nucleoside-diphosphate sugar epimerase/dehydratase low > 71
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS01650 23S rRNA methyltransferase 0.28 BPHYT_RS04385 nucleoside-diphosphate sugar oxidoreductase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase 0.28 H281DRAFT_04851 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC low > 103
Paraburkholderia sabiae LMG 24235 0.25 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase 0.28 QEN71_RS25590 nucleoside-diphosphate sugar epimerase/dehydratase low > 153
Ralstonia solanacearum PSI07 0.25 RPSI07_RS23695 class I SAM-dependent rRNA methyltransferase 0.37 RPSI07_RS04445 polysaccharide biosynthesis protein low > 81
Paraburkholderia graminis OAS925 0.25 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase 0.28 ABIE53_001163 FlaA1/EpsC-like NDP-sugar epimerase low > 113
Ralstonia solanacearum GMI1000 0.25 RS_RS00255 class I SAM-dependent rRNA methyltransferase 0.37 RS_RS21965 polysaccharide biosynthesis protein low > 80
Ralstonia solanacearum IBSBF1503 0.25 RALBFv3_RS09670 class I SAM-dependent rRNA methyltransferase 0.37 RALBFv3_RS19155 polysaccharide biosynthesis protein low > 76
Cupriavidus basilensis FW507-4G11 0.25 RR42_RS01670 23S rRNA methyltransferase 0.43 RR42_RS15825 capsular biosynthesis protein low > 128
Ralstonia solanacearum UW163 0.25 UW163_RS03910 class I SAM-dependent rRNA methyltransferase 0.37 UW163_RS19975 polysaccharide biosynthesis protein — —
Ralstonia sp. UNC404CL21Col 0.24 ABZR87_RS05070 class I SAM-dependent rRNA methyltransferase 0.42 ABZR87_RS08730 nucleoside-diphosphate sugar epimerase/dehydratase low > 80
Dechlorosoma suillum PS 0.24 Dsui_0653 putative SAM-dependent methyltransferase 0.28 Dsui_0400 putative nucleoside-diphosphate sugar epimerase low > 51
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_3350 Predicted SAM-dependent methyltransferases 0.25 Echvi_0060 Predicted nucleoside-diphosphate sugar epimerases low > 79
Dyella japonica UNC79MFTsu3.2 0.22 ABZR86_RS16890 class I SAM-dependent rRNA methyltransferase 0.27 ABZR86_RS05540 nucleoside-diphosphate sugar epimerase/dehydratase low > 74
Pontibacter actiniarum KMM 6156, DSM 19842 0.22 CA264_05605 RlmI/RlmK family 23S rRNA methyltransferase 0.24 CA264_12325 polysaccharide biosynthesis protein low > 74
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI 0.25 Xcc-8004.2386.1 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) low > 74
Rhodanobacter denitrificans FW104-10B01 0.21 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase 0.27 LRK54_RS18060 polysaccharide biosynthesis protein low > 59
Rhodanobacter denitrificans MT42 0.21 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase 0.27 LRK55_RS17915 nucleoside-diphosphate sugar epimerase/dehydratase low > 63
Phocaeicola dorei CL03T12C01 0.21 ABI39_RS18215 class I SAM-dependent rRNA methyltransferase 0.23 ABI39_RS13770 polysaccharide biosynthesis protein low > 72
Lysobacter sp. OAE881 0.21 ABIE51_RS00980 class I SAM-dependent rRNA methyltransferase 0.26 ABIE51_RS09370 nucleoside-diphosphate sugar epimerase/dehydratase low > 62
Variovorax sp. OAS795 0.20 ABID97_RS06155 class I SAM-dependent methyltransferase 0.39 ABID97_RS02200 nucleoside-diphosphate sugar epimerase/dehydratase low > 91
Bacteroides ovatus ATCC 8483 0.20 BACOVA_05134 hypothetical protein 0.23 BACOVA_03688 polysaccharide biosynthesis protein low > 94
Bacteroides thetaiotaomicron VPI-5482 0.20 BT4331 conserved hypothetical protein (NCBI ptt file) 0.22 BT0598 putative nucleoside-diphosphate sugar epimerases/dehydrase (NCBI ptt file) low > 81
Acidovorax sp. GW101-3H11 0.19 Ac3H11_2000 LSU m5C1962 methyltransferase RlmI 0.23 Ac3H11_1539 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) 0.24 55
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_16710 rlmK RlmI/RlmK family 23S rRNA methyltransferase 0.28 OKGIIK_07240 flaA1 polysaccharide biosynthesis protein low > 52

Not shown: 35 genomes with orthologs for PS417_26880 only; 11 genomes with orthologs for PS417_08190 only