| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_3338 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 1.0 | Psest_1640 | | (p)ppGpp synthetase, RelA/SpoT family | 0.28 | 15 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_5048 | | Dna binding response regulator PrrA (RegA) | 0.89 | PfGW456L13_2035 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_4230 | | Helix-turn-helix, Fis-type | 0.87 | Psyr_3695 | | RelA/SpoT protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_4230 | | Helix-turn-helix, Fis-type | 0.87 | Psyr_3695 | | RelA/SpoT protein | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.86 | PFLU_RS04140 | | response regulator transcription factor | 0.89 | PFLU_RS22095 | | GTP diphosphokinase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.86 | PS417_04100 | | chemotaxis protein CheY | 0.89 | PS417_20150 | | (p)ppGpp synthetase | — | — |
| Pseudomonas fluorescens SBW25 | 0.86 | PFLU_RS04140 | | response regulator transcription factor | 0.89 | PFLU_RS22095 | | GTP diphosphokinase | low | > 109 |
| Pseudomonas sp. RS175 | 0.86 | PFR28_00137 | | Photosynthetic apparatus regulatory protein RegA | 0.89 | PFR28_03223 | | GTP pyrophosphokinase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.86 | AO353_05335 | | chemotaxis protein CheY | 0.89 | AO353_02710 | | (p)ppGpp synthetase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.86 | Pf1N1B4_1115 | | Dna binding response regulator PrrA (RegA) | 0.90 | Pf1N1B4_3508 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | 0.32 | 61 |
| Pseudomonas fluorescens FW300-N2C3 | 0.85 | AO356_07205 | | chemotaxis protein CheY | 0.90 | AO356_19060 | | (p)ppGpp synthetase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.85 | Pf6N2E2_3302 | | Dna binding response regulator PrrA (RegA) | 0.90 | Pf6N2E2_5723 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | — | — |
| Pseudomonas sp. S08-1 | 0.84 | OH686_08680 | | Dna binding response regulator PrrA (RegA) | 0.88 | OH686_18960 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase , (p)ppGpp synthetase I | low | > 80 |
| Pseudomonas putida KT2440 | 0.84 | PP_0888 | | Photosynthetic apparatus regulatory protein RegA | 0.87 | PP_1656 | | ATP:GTP 3'-pyrophosphotransferase | low | > 96 |
| Dechlorosoma suillum PS | 0.59 | Dsui_1180 | | response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein | 0.42 | Dsui_2816 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 51 |
| Dyella japonica UNC79MFTsu3.2 | 0.55 | ABZR86_RS10115 | | response regulator transcription factor | 0.41 | ABZR86_RS19725 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.54 | OKGIIK_10900 | | two-component system response regulator | 0.40 | OKGIIK_02170 | relA | GTP diphosphokinase | — | — |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS03810 | | response regulator transcription factor | 0.40 | LRK55_RS12430 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS04040 | | response regulator transcription factor | 0.40 | LRK54_RS12725 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.50 | H281DRAFT_02208 | | two component transcriptional regulator, Fis family | 0.38 | H281DRAFT_04499 | | GTP pyrophosphokinase | — | — |
| Paraburkholderia graminis OAS925 | 0.50 | ABIE53_000420 | | two-component system response regulator RegA | 0.38 | ABIE53_002905 | | GTP pyrophosphokinase | — | — |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS01625 | | chemotaxis protein CheY | 0.38 | BPHYT_RS13655 | | GTP pyrophosphokinase | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS00325 | | response regulator transcription factor | 0.39 | QEN71_RS05265 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.49 | HSERO_RS13000 | | chemotaxis protein CheY | 0.38 | HSERO_RS09855 | | GTP pyrophosphokinase | low | > 78 |
| Cupriavidus basilensis FW507-4G11 | 0.47 | RR42_RS01085 | | chemotaxis protein CheY | 0.38 | RR42_RS06585 | | GTP pyrophosphokinase | low | > 128 |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS05135 | | response regulator transcription factor | 0.39 | ABZR87_RS13745 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS00200 | | DNA-binding response regulator | 0.38 | RS_RS07930 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 80 |
| Kangiella aquimarina DSM 16071 | 0.45 | B158DRAFT_1932 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.43 | B158DRAFT_2277 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 40 |
| Ralstonia solanacearum IBSBF1503 | 0.45 | RALBFv3_RS09615 | | DNA-binding response regulator | 0.38 | RALBFv3_RS01805 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 76 |
| Marinobacter adhaerens HP15 | 0.45 | HP15_3981 | | two component transcriptional regulator, Fis family | 0.63 | HP15_791 | | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA | low | > 73 |
| Ralstonia solanacearum PSI07 | 0.45 | RPSI07_RS23750 | | DNA-binding response regulator | 0.39 | RPSI07_RS15685 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 81 |
| Ralstonia solanacearum UW163 | 0.45 | UW163_RS03965 | | DNA-binding response regulator | 0.38 | UW163_RS15115 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Shewanella amazonensis SB2B | 0.43 | Sama_3186 | | response regulator receiver protein (RefSeq) | 0.46 | Sama_1033 | | GTP diphosphokinase (RefSeq) | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.43 | Xcc-8004.3041.1 | | Dna binding response regulator PrrA (RegA) | 0.37 | Xcc-8004.1489.1 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.41 | Ac3H11_3147 | | Dna binding response regulator PrrA (RegA) | 0.35 | Ac3H11_362 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | — | — |
| Variovorax sp. SCN45 | 0.41 | GFF5672 | | Dna binding response regulator PrrA (RegA) | 0.33 | GFF403 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | low | > 127 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3707 | | response regulator receiver protein (RefSeq) | 0.47 | Shewana3_1111 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.41 | SO4172 | | DNA-binding response regulator (NCBI ptt file) | 0.47 | SO3455 | relA | GTP pyrophosphokinase (NCBI ptt file) | low | > 76 |
| Lysobacter sp. OAE881 | 0.40 | ABIE51_RS09795 | | response regulator transcription factor | 0.36 | ABIE51_RS05170 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Shewanella loihica PV-4 | 0.40 | Shew_3342 | | two component Fis family transcriptional regulator (RefSeq) | 0.45 | Shew_1202 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | low | > 60 |
Not shown: 14 genomes with orthologs for Psest_3338 only; 39 genomes with orthologs for Psest_1640 only