Conservation of cofitness between EX31_RS22280 and EX31_RS03890 in Rahnella sp. WP5

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS22280 7-cyano-7-deazaguanine synthase QueC 1.0 EX31_RS03890 Na+/H+ antiporter NhaA 0.54 17
Serratia liquefaciens MT49 0.88 IAI46_05045 7-cyano-7-deazaguanine synthase QueC 0.65 IAI46_03085 Na+/H+ antiporter NhaA low > 86
Pantoea sp. MT58 0.83 IAI47_14620 7-cyano-7-deazaguanine synthase QueC 0.59 IAI47_16165 Na+/H+ antiporter NhaA — —
Escherichia fergusonii Becca 0.83 EFB2_03613 7-cyano-7-deazaguanine synthase 0.59 EFB2_04024 Na(+)/H(+) antiporter NhaA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_03229 7-cyano-7-deazaguanine synthase 0.57 OHPLBJKB_03642 Na(+)/H(+) antiporter NhaA low > 73
Escherichia coli ECOR27 0.83 NOLOHH_01230 queC 7-cyano-7-deazaguanine synthase QueC 0.57 NOLOHH_03360 nhaA Na+/H+ antiporter NhaA low > 75
Escherichia coli Nissle 1917 0.83 ECOLIN_RS02660 7-cyano-7-deazaguanine synthase QueC 0.59 ECOLIN_RS00105 Na+/H+ antiporter NhaA low > 55
Pectobacterium carotovorum WPP14 0.83 HER17_RS15815 7-cyano-7-deazaguanine synthase QueC 0.56 HER17_RS02850 Na+/H+ antiporter NhaA — —
Escherichia coli ECOR38 0.83 HEPCGN_06910 queC 7-cyano-7-deazaguanine synthase QueC 0.56 HEPCGN_09015 nhaA Na+/H+ antiporter NhaA low > 87
Escherichia coli BL21 0.82 ECD_00396 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis 0.57 ECD_00018 sodium-proton antiporter low > 61
Dickeya dianthicola 67-19 0.82 HGI48_RS05715 7-cyano-7-deazaguanine synthase QueC 0.54 HGI48_RS18295 Na+/H+ antiporter NhaA — —
Escherichia coli BW25113 0.82 b0444 ybaX predicted aluminum resistance protein (NCBI) 0.56 b0019 nhaA pH-dependent sodium/proton antiporter (NCBI) low > 76
Dickeya dianthicola ME23 0.82 DZA65_RS06040 7-cyano-7-deazaguanine synthase QueC 0.54 DZA65_RS19435 Na+/H+ antiporter NhaA — —
Dickeya dadantii 3937 0.82 DDA3937_RS05670 7-cyano-7-deazaguanine synthase QueC 0.55 DDA3937_RS18360 Na+/H+ antiporter NhaA — —
Escherichia coli ECRC62 0.82 BNILDI_22645 queC 7-cyano-7-deazaguanine synthase QueC 0.57 BNILDI_08245 nhaA Na+/H+ antiporter NhaA low > 75
Escherichia coli ECRC100 0.82 OKFHMN_08295 queC 7-cyano-7-deazaguanine synthase QueC 0.57 OKFHMN_11030 nhaA Na+/H+ antiporter NhaA low > 80
Escherichia coli ECRC102 0.82 NIAGMN_06350 queC 7-cyano-7-deazaguanine synthase QueC 0.57 NIAGMN_08880 nhaA Na+/H+ antiporter NhaA — —
Escherichia coli ECRC98 0.82 JDDGAC_11950 queC 7-cyano-7-deazaguanine synthase QueC 0.57 JDDGAC_14625 nhaA Na+/H+ antiporter NhaA low > 86
Escherichia coli ECRC99 0.82 KEDOAH_19670 queC 7-cyano-7-deazaguanine synthase QueC 0.57 KEDOAH_17125 nhaA Na+/H+ antiporter NhaA — —
Escherichia coli ECRC101 0.82 MCAODC_27520 queC 7-cyano-7-deazaguanine synthase QueC 0.57 MCAODC_01545 nhaA Na+/H+ antiporter NhaA low > 87
Enterobacter sp. TBS_079 0.82 MPMX20_01035 7-cyano-7-deazaguanine synthase 0.55 MPMX20_00722 Na(+)/H(+) antiporter NhaA low > 85
Klebsiella michiganensis M5al 0.82 BWI76_RS06560 7-cyano-7-deazaguanine synthase QueC 0.58 BWI76_RS04315 Na+/H+ antiporter NhaA low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF4360 Queuosine Biosynthesis QueC ATPase 0.58 GFF1119 Na+/H+ antiporter NhaA type low > 78
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2526 queuosine biosynthesis protein QueC 0.56 EX28DRAFT_3628 Na+/H+ antiporter NhaA low > 76
Erwinia tracheiphila SCR3 0.80 LU632_RS18310 queC 7-cyano-7-deazaguanine synthase QueC 0.50 LU632_RS02665 nhaA Na+/H+ antiporter NhaA — —
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_22170 7-cyano-7-deazaguanine synthase 0.50 AO353_17055 sodium:proton antiporter — —
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_1527 Queuosine Biosynthesis QueC ATPase 0.49 Pf1N1B4_3202 Na+/H+ antiporter NhaA type — —
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3734 Queuosine Biosynthesis QueC ATPase 0.53 Pf6N2E2_2937 Na+/H+ antiporter NhaA type — —
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_06875 7-cyano-7-deazaguanine synthase QueC 0.58 CSW01_08180 Na+/H+ antiporter NhaA low > 62
Shewanella amazonensis SB2B 0.68 Sama_1826 ExsB protein (RefSeq) 0.57 Sama_0868 Na+/H+ antiporter (RefSeq) low > 62
Shewanella loihica PV-4 0.68 Shew_2062 exsB protein (RefSeq) 0.55 Shew_1042 Na+/H+ antiporter NhaA (RefSeq) — —
Shewanella oneidensis MR-1 0.67 SO2503 exsB exsB protein (NCBI ptt file) 0.58 SO1336 nhaA Na+/H+ antiporter (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.67 Shewana3_2164 queuosine biosynthesis protein QueC (RefSeq) 0.57 Shewana3_3038 Na+/H+ antiporter NhaA (RefSeq) low > 73
Phocaeicola vulgatus CL09T03C04 0.48 HMPREF1058_RS15270 7-cyano-7-deazaguanine synthase QueC 0.35 HMPREF1058_RS06405 Na+/H+ antiporter NhaA low > 67
Phocaeicola dorei CL03T12C01 0.48 ABI39_RS11300 7-cyano-7-deazaguanine synthase QueC 0.35 ABI39_RS20170 Na+/H+ antiporter NhaA low > 72
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS11150 7-cyano-7-deazaguanine synthase QueC 0.36 HMPREF1181_RS16585 Na+/H+ antiporter NhaA low > 56
Bacteroides thetaiotaomicron VPI-5482 0.46 BT1566 putative aluminum resistance protein (NCBI ptt file) 0.36 BT0634 Na+/H+ antiporter 1 (NCBI ptt file) — —
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS20880 7-cyano-7-deazaguanine synthase 0.48 HSERO_RS11465 sodium:proton antiporter low > 78
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS14060 7-cyano-7-deazaguanine synthase QueC 0.30 HMPREF1078_RS00855 Na+/H+ antiporter NhaA low > 61
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS00200 7-cyano-7-deazaguanine synthase QueC 0.49 QEN71_RS19280 Na+/H+ antiporter NhaA low > 153
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_03262 queuosine biosynthesis protein QueC 0.41 CCNA_00459 Na+/H+ antiporter nhaA low > 67
Caulobacter crescentus NA1000 0.38 CCNA_03262 queuosine biosynthesis protein QueC 0.41 CCNA_00459 Na+/H+ antiporter nhaA low > 66
Bosea sp. OAE506 0.38 ABIE41_RS11340 7-cyano-7-deazaguanine synthase QueC 0.46 ABIE41_RS19785 Na+/H+ antiporter NhaA low > 77
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF1402 Queuosine Biosynthesis QueC ATPase 0.34 GFF4701 Na+/H+ antiporter NhaA type low > 90
Desulfovibrio vulgaris Miyazaki F 0.36 DvMF_1125 exsB protein (RefSeq) 0.40 DvMF_2989 Na+/H+ antiporter NhaA (RefSeq) low > 51
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS08700 7-cyano-7-deazaguanine synthase QueC 0.30 A4249_RS10415 Na+/H+ antiporter NhaA — —
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_18070 7-cyano-7-deazaguanine synthase 0.53 AO356_05390 sodium:proton antiporter — —
Pseudomonas simiae WCS417 0.29 PS417_22400 7-cyano-7-deazaguanine synthase 0.50 PS417_06545 pH-dependent sodium/proton antiporter — —
Pseudomonas sp. RS175 0.29 PFR28_03403 7-cyano-7-deazaguanine synthase 0.54 PFR28_00526 Na(+)/H(+) antiporter NhaA — —
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC 0.51 PFLU_RS06575 Na+/H+ antiporter NhaA — —
Pseudomonas fluorescens SBW25 0.29 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC 0.51 PFLU_RS06575 Na+/H+ antiporter NhaA — —
Pseudomonas putida KT2440 0.29 PP_1226 pre-queuosine 0 synthase 0.49 PP_1132 Na(+)/H(+) antiporter NhaA 1 low > 96
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_1419 preQ(0) biosynthesis protein QueC 0.44 Psyr_4210 sodium/proton antiporter, NhaA family — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_1419 preQ(0) biosynthesis protein QueC 0.44 Psyr_4210 sodium/proton antiporter, NhaA family — —
Lysobacter sp. OAE881 0.28 ABIE51_RS05105 7-cyano-7-deazaguanine synthase QueC 0.46 ABIE51_RS04100 Na+/H+ antiporter NhaA — —
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_1862 Queuosine Biosynthesis QueC ATPase 0.53 PfGW456L13_4617 Na+/H+ antiporter NhaA type — —
Alteromonas macleodii MIT1002 0.26 MIT1002_01263 7-cyano-7-deazaguanine synthase 0.50 MIT1002_00520 Sodium/proton antiporter NhaA low > 70
Rhodospirillum rubrum S1H 0.26 Rru_A1957 ExsB (NCBI) 0.47 Rru_A0128 Na+/H+ antiporter NhaA (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.26 AMB_RS20345 7-cyano-7-deazaguanine synthase 0.44 AMB_RS12285 Na+/H+ antiporter NhaA — —
Azospirillum sp. SherDot2 0.25 MPMX19_00425 7-cyano-7-deazaguanine synthase 0.51 MPMX19_02315 Na(+)/H(+) antiporter NhaA low > 112
Azospirillum brasilense Sp245 0.25 AZOBR_RS04150 7-cyano-7-deazaguanine synthase 0.42 AZOBR_RS12965 sodium:proton antiporter low > 97
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_3209 queuosine biosynthesis protein QueC 0.36 Ga0059261_2282 sodium/proton antiporter, NhaA family (TC 2.A.33.1.1) — —
Sinorhizobium meliloti 1021 0.17 SM_b20940 hypothetical protein 0.30 SMa1913 Na+/H+ antiporter low > 103

Not shown: 31 genomes with orthologs for EX31_RS22280 only; 4 genomes with orthologs for EX31_RS03890 only