Conservation of cofitness between ECD_00218 and ECD_03284 in Escherichia coli BL21

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00218 type 2 glutamine amidotransferase family protein 1.0 ECD_03284 1,4-alpha-glucan branching enzyme 0.58 1
Escherichia coli ECRC62 0.99 BNILDI_00335 yafJ Putative glutamine amidotransferase YafJ 1.00 BNILDI_02840 glgB 1,4-alpha-glucan branching enzyme low > 75
Escherichia coli BW25113 0.99 b0223 yafJ predicted amidotransfease (NCBI) 1.00 b3432 glgB glycogen branching enzyme (NCBI) low > 76
Escherichia coli ECOR27 0.99 NOLOHH_02140 yafJ Putative glutamine amidotransferase YafJ 1.00 NOLOHH_08675 glgB 1,4-alpha-glucan branching enzyme low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_03416 Putative glutamine amidotransferase YafJ 1.00 OHPLBJKB_00269 1,4-alpha-glucan branching enzyme GlgB low > 73
Escherichia coli ECOR38 0.99 HEPCGN_07875 yafJ Putative glutamine amidotransferase YafJ 1.00 HEPCGN_15700 glgB 1,4-alpha-glucan branching enzyme low > 87
Escherichia fergusonii Becca 0.99 EFB2_03794 Putative glutamine amidotransferase YafJ 0.99 EFB2_00387 1,4-alpha-glucan branching enzyme GlgB low > 86
Escherichia coli ECRC100 0.99 OKFHMN_09770 yafJ class II glutamine amidotransferase 1.00 OKFHMN_16885 glgB 1,4-alpha-glucan branching enzyme low > 80
Escherichia coli Nissle 1917 0.99 ECOLIN_RS01755 class II glutamine amidotransferase 1.00 ECOLIN_RS19640 1,4-alpha-glucan branching enzyme low > 55
Escherichia coli ECRC99 0.99 KEDOAH_18385 yafJ class II glutamine amidotransferase 1.00 KEDOAH_11255 glgB 1,4-alpha-glucan branching enzyme
Escherichia coli ECRC98 0.99 JDDGAC_13395 yafJ class II glutamine amidotransferase 1.00 JDDGAC_20515 glgB 1,4-alpha-glucan branching enzyme low > 86
Escherichia coli ECRC102 0.99 NIAGMN_07630 yafJ class II glutamine amidotransferase 1.00 NIAGMN_14655 glgB 1,4-alpha-glucan branching enzyme
Escherichia coli ECRC101 0.99 MCAODC_00290 yafJ class II glutamine amidotransferase 1.00 MCAODC_07415 glgB 1,4-alpha-glucan branching enzyme low > 87
Enterobacter asburiae PDN3 0.95 EX28DRAFT_2666 Predicted glutamine amidotransferase 0.93 EX28DRAFT_4115 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF4102 Predicted glutamine amidotransferase 0.95 GFF575 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) low > 78
Enterobacter sp. TBS_079 0.94 MPMX20_00912 Putative glutamine amidotransferase YafJ 0.94 MPMX20_04314 1,4-alpha-glucan branching enzyme GlgB low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS05480 class II glutamine amidotransferase 0.92 BWI76_RS26215 glycogen-branching enzyme low > 92
Serratia liquefaciens MT49 0.86 IAI46_04345 class II glutamine amidotransferase 0.74 IAI46_23940 1,4-alpha-glucan branching protein GlgB low > 86
Rahnella sp. WP5 0.86 EX31_RS21015 class II glutamine amidotransferase 0.73 EX31_RS05025 1,4-alpha-glucan branching enzyme low > 89
Pantoea sp. MT58 0.85 IAI47_15185 class II glutamine amidotransferase 0.83 IAI47_01680 1,4-alpha-glucan branching enzyme low > 76
Pectobacterium carotovorum WPP14 0.85 HER17_RS04650 class II glutamine amidotransferase 0.75 HER17_RS01485 1,4-alpha-glucan branching enzyme low > 75
Dickeya dadantii 3937 0.85 DDA3937_RS16585 class II glutamine amidotransferase 0.72 DDA3937_RS19745 1,4-alpha-glucan branching protein GlgB low > 74
Dickeya dianthicola ME23 0.84 DZA65_RS17745 class II glutamine amidotransferase 0.73 DZA65_RS20930 1,4-alpha-glucan branching protein GlgB low > 75
Dickeya dianthicola 67-19 0.83 HGI48_RS16655 class II glutamine amidotransferase 0.73 HGI48_RS19855 1,4-alpha-glucan branching protein GlgB low > 71
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_11360 class II glutamine amidotransferase 0.45 CSW01_14125 1,4-alpha-glucan branching enzyme low > 62
Shewanella oneidensis MR-1 0.68 SO2535 hypothetical amidotransferase (NCBI ptt file) 0.48 SO1494 glgB 1,4-alpha-glucan branching enzyme (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.68 Sama_1869 amidotransferase (RefSeq) 0.49 Sama_2453 1,4-alpha-glucan branching enzyme (RefSeq) low > 62
Shewanella sp. ANA-3 0.67 Shewana3_2322 glutamine amidotransferase, class-II (RefSeq) 0.47 Shewana3_2934 glycogen branching enzyme (RefSeq) low > 73
Shewanella loihica PV-4 0.67 Shew_2107 glutamine amidotransferase, class-II (RefSeq) 0.46 Shew_1168 glycogen branching enzyme (RefSeq)
Azospirillum sp. SherDot2 0.66 MPMX19_00595 Putative glutamine amidotransferase YafJ 0.56 MPMX19_03849 1,4-alpha-glucan branching enzyme GlgB
Azospirillum brasilense Sp245 0.64 AZOBR_RS05605 glutamine amidotransferase 0.56 AZOBR_RS09455 glycogen branching protein low > 97
Pseudomonas fluorescens SBW25 0.59 PFLU_RS07540 class II glutamine amidotransferase 0.52 PFLU_RS13485 1,4-alpha-glucan branching protein GlgB low > 109
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS07540 class II glutamine amidotransferase 0.52 PFLU_RS13485 1,4-alpha-glucan branching protein GlgB low > 109
Pseudomonas sp. S08-1 0.59 OH686_05255 Putative glutamine amidotransferase YafJ 0.50 OH686_01540 1,4-alpha-glucan branching enzyme low > 80
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_4482 Glutamine amidotransferase, class-II 0.52 PfGW456L13_3253 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) low > 87
Pseudomonas sp. RS175 0.59 PFR28_00725 Putative glutamine amidotransferase YafJ 0.53 PFR28_01319 1,4-alpha-glucan branching enzyme GlgB low > 88
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_2711 Glutamine amidotransferase, class-II 0.52 Pf6N2E2_2117 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) low > 103
Pseudomonas simiae WCS417 0.59 PS417_07455 glutamine amidotransferase 0.52 PS417_12805 glycogen branching protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_17960 glutamine amidotransferase 0.52 AO353_22945 glycogen branching protein low > 101
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_04350 glutamine amidotransferase 0.53 AO356_01245 glycogen branching protein low > 104
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_3359 Glutamine amidotransferase, class-II 0.53 Pf1N1B4_4678 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_1576 Glutamine amidotransferase, class-II 0.52 Psyr_2491 glycogen branching enzyme low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_1576 Glutamine amidotransferase, class-II 0.52 Psyr_2491 glycogen branching enzyme 0.32 36
Pseudomonas putida KT2440 0.57 PP_4581 putative amidotransferase 0.53 PP_4058 1,4-alpha-glucan branching enzyme low > 96
Pseudomonas stutzeri RCH2 0.55 Psest_1849 Predicted glutamine amidotransferase 0.50 Psest_2158 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase low > 67
Marinobacter adhaerens HP15 0.55 HP15_3871 glutamine amidotransferase class-II 0.46 HP15_1712 glycogen branching enzyme low > 73
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS26860 class II glutamine amidotransferase 0.51 QEN71_RS17730 1,4-alpha-glucan branching protein GlgB low > 153
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS24040 glutamine amidotransferase 0.49 HSERO_RS12510 glycogen branching protein 0.25 18
Variovorax sp. OAS795 0.52 ABID97_RS04635 class II glutamine amidotransferase 0.60 ABID97_RS04550 1,4-alpha-glucan branching protein GlgB low > 91
Paraburkholderia graminis OAS925 0.51 ABIE53_003506 putative glutamine amidotransferase 0.52 ABIE53_004826 1,4-alpha-glucan branching enzyme low > 113
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04266 glutamine amidotransferase 0.52 H281DRAFT_06050 1,4-alpha-glucan branching enzyme low > 103
Ralstonia solanacearum PSI07 0.50 RPSI07_RS21635 class II glutamine amidotransferase 0.51 RPSI07_RS00885 1,4-alpha-glucan branching protein GlgB low > 81
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS07540 class II glutamine amidotransferase 0.51 ABZR87_RS17215 1,4-alpha-glucan branching protein GlgB low > 80
Ralstonia solanacearum GMI1000 0.50 RS_RS02405 class II glutamine amidotransferase 0.50 RS_RS18305 glycogen-branching enzyme low > 80
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS16680 glutamine amidotransferase 0.53 BPHYT_RS33780 glycogen branching protein low > 109
Variovorax sp. SCN45 0.49 GFF6320 Putative glutamine amidotransferase YafJ 0.60 GFF6333 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) low > 127
Synechococcus elongatus PCC 7942 0.46 Synpcc7942_2184 hypothetical protein 0.46 Synpcc7942_1085 glgB glycogen branching enzyme low > 38
Mycobacterium tuberculosis H37Rv 0.10 Rv1061 Conserved protein 0.44 Rv1326c 1,4-alpha-glucan branching enzyme GlgB (glycogen branching enzyme)
Rhizobium sp. OAE497 0.10 ABIE40_RS01490 class II glutamine amidotransferase 0.51 ABIE40_RS30590 1,4-alpha-glucan branching protein GlgB low > 107

Not shown: 8 genomes with orthologs for ECD_00218 only; 21 genomes with orthologs for ECD_03284 only