Conservation of cofitness between ECD_01675 and ECD_02310 in Escherichia coli BL21

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01675 UPF0061 family protein 1.0 ECD_02310 DUF3820 family protein 0.57 1
Escherichia coli ECOR38 0.98 HEPCGN_05490 selO protein adenylyltransferase SelO 0.98 HEPCGN_21400 Putative quorum-sensing-regulated virulence factor low > 85
Escherichia coli BW25113 0.98 b1706 ydiU hypothetical protein (NCBI) 1.00 b4546 ypeB hypothetical protein (NCBI) low > 76
Escherichia coli ECRC102 0.98 NIAGMN_00940 selO protein adenylyltransferase SelO 1.00 NIAGMN_19990 ypeB Uncharacterized protein YpeB — —
Escherichia coli ECRC101 0.98 MCAODC_18285 selO protein adenylyltransferase SelO 1.00 MCAODC_12750 ypeB Uncharacterized protein YpeB — —
Escherichia coli ECRC99 0.98 KEDOAH_00985 selO protein adenylyltransferase SelO 1.00 KEDOAH_06000 ypeB Uncharacterized protein YpeB — —
Escherichia coli ECRC98 0.98 JDDGAC_01700 selO protein adenylyltransferase SelO 1.00 JDDGAC_26170 ypeB Uncharacterized protein YpeB — —
Escherichia coli ECRC101 0.98 OKFHMN_27125 selO protein adenylyltransferase SelO 1.00 OKFHMN_22220 ypeB Uncharacterized protein YpeB — —
Escherichia coli ECOR27 0.98 NOLOHH_17645 selO protein adenylyltransferase SelO 1.00 NOLOHH_13900 ypeB Uncharacterized protein YpeB — —
Escherichia fergusonii Becca 0.98 EFB2_02285 Protein adenylyltransferase SelO 0.99 EFB2_01466 hypothetical protein low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS09535 protein adenylyltransferase SelO 0.99 ECOLIN_RS13850 DUF3820 family protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF3534 Selenoprotein O and cysteine-containing homologs 0.98 GFF2040 FIG074102: hypothetical protein low > 78
Enterobacter asburiae PDN3 0.81 EX28DRAFT_1713 Uncharacterized conserved protein 0.94 EX28DRAFT_0218 Uncharacterized protein conserved in bacteria low > 76
Enterobacter sp. TBS_079 0.81 MPMX20_01907 Protein adenylyltransferase SelO 0.92 MPMX20_03304 hypothetical protein low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS17085 hypothetical protein 0.90 BWI76_RS20620 negative regulator — —
Pantoea sp. MT58 0.67 IAI47_10920 YdiU family protein 0.70 IAI47_05460 DUF3820 family protein low > 76
Serratia liquefaciens MT49 0.67 IAI46_11065 YdiU family protein 0.78 IAI46_18425 DUF3820 family protein low > 86
Dickeya dianthicola ME23 0.66 DZA65_RS13470 YdiU family protein 0.80 DZA65_RS18225 hypothetical protein low > 75
Dickeya dianthicola 67-19 0.66 HGI48_RS13010 YdiU family protein 0.78 HGI48_RS17140 DUF3820 family protein low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS12935 YdiU family protein 0.80 DDA3937_RS17090 DUF3820 family protein low > 74
Rahnella sp. WP5 0.65 EX31_RS13970 YdiU family protein 0.83 EX31_RS20155 DUF3820 family protein low > 89
Pectobacterium carotovorum WPP14 0.65 HER17_RS08850 YdiU family protein 0.79 HER17_RS04050 DUF3820 family protein low > 75
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_09655 SELO family protein 0.56 CSW01_14815 hypothetical protein low > 62
Pseudomonas simiae WCS417 0.45 PS417_02140 hypothetical protein 0.44 PS417_22090 hypothetical protein — —
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS02195 YdiU family protein 0.44 PFLU_RS23705 DUF3820 family protein low > 109
Pseudomonas fluorescens SBW25 0.45 PFLU_RS02195 YdiU family protein 0.44 PFLU_RS23705 DUF3820 family protein low > 109
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS09550 hypothetical protein 0.44 BPHYT_RS08730 hypothetical protein low > 109
Paraburkholderia graminis OAS925 0.45 ABIE53_002149 uncharacterized protein YdiU (UPF0061 family) 0.45 ABIE53_001981 uncharacterized protein (DUF3820 family) low > 113
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_00914 Uncharacterized conserved protein YdiU, UPF0061 family 0.44 H281DRAFT_00769 hypothetical protein 0.27 86
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS21900 YdiU family protein 0.43 QEN71_RS22640 DUF3820 family protein low > 153
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_09050 hypothetical protein 0.44 AO356_05140 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_12770 hypothetical protein 0.44 AO353_03335 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_1498 Selenoprotein O and cysteine-containing homologs 0.44 Pf1N1B4_583 FIG00957748: hypothetical protein low > 87
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_231 Selenoprotein O and cysteine-containing homologs 0.43 PfGW456L13_1906 FIG00957748: hypothetical protein low > 87
Shewanella sp. ANA-3 0.43 Shewana3_3841 hypothetical protein (RefSeq) 0.51 Shewana3_1217 hypothetical protein (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_0494 Protein of unknown function UPF0061 0.43 Psyr_1123 conserved hypothetical protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_0494 Protein of unknown function UPF0061 0.43 Psyr_1123 conserved hypothetical protein low > 86
Shewanella oneidensis MR-1 0.43 SO0330 conserved hypothetical protein (NCBI ptt file) 0.52 SO3326 conserved hypothetical protein (NCBI ptt file) low > 76
Pseudomonas stutzeri RCH2 0.43 Psest_0396 Uncharacterized conserved protein 0.47 Psest_1458 Uncharacterized protein conserved in bacteria low > 67
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS11160 hypothetical protein 0.42 RR42_RS27745 hypothetical protein low > 128
Ralstonia solanacearum GMI1000 0.43 RS_RS08830 YdiU family protein 0.44 RS_RS16700 hypothetical protein low > 80
Acidovorax sp. GW101-3H11 0.43 Ac3H11_2534 Selenoprotein O and cysteine-containing homologs 0.44 Ac3H11_1029 Putative cytoplasmic protein low > 79
Shewanella loihica PV-4 0.43 Shew_0262 hypothetical protein (RefSeq) 0.47 Shew_1282 hypothetical protein (RefSeq) low > 60
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS12630 protein adenylyltransferase SelO 0.44 ABZR87_RS04155 DUF3820 family protein low > 80
Pseudomonas sp. S08-1 0.42 OH686_09805 UPF0061 protein YdiU 0.43 OH686_18670 Uncharacterized protein YpeB low > 80
Variovorax sp. OAS795 0.42 ABID97_RS15700 protein adenylyltransferase SelO 0.44 ABID97_RS04120 DUF3820 family protein low > 91
Ralstonia solanacearum PSI07 0.42 RPSI07_RS16295 YdiU family protein 0.44 RPSI07_RS08385 hypothetical protein low > 81
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS01180 YdiU family protein 0.44 RALBFv3_RS08885 hypothetical protein low > 76
Ralstonia solanacearum UW163 0.42 UW163_RS14490 YdiU family protein 0.44 UW163_RS04725 hypothetical protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF4580 Selenoprotein O and cysteine-containing homologs 0.45 GFF4965 Putative cytoplasmic protein low > 90
Variovorax sp. SCN45 0.41 GFF1330 UPF0061 protein YdiU 0.43 GFF5018 Uncharacterized protein YpeB low > 127
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_09030 selO YdiU family protein 0.47 OKGIIK_15025 Cytoplasmic protein low > 52
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS00335 protein adenylyltransferase SelO 0.44 ABZR86_RS01730 DUF3820 family protein low > 74
Rhodanobacter denitrificans MT42 0.37 LRK55_RS15710 YdiU family protein 0.49 LRK55_RS08045 DUF3820 family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS15955 YdiU family protein 0.49 LRK54_RS08290 DUF3820 family protein low > 59
Dechlorosoma suillum PS 0.31 Dsui_1465 hypothetical protein 0.42 Dsui_0949 hypothetical protein low > 51
Alteromonas macleodii MIT1002 0.19 MIT1002_03272 hypothetical protein 0.46 MIT1002_01393 hypothetical protein low > 70

Not shown: 19 genomes with orthologs for ECD_01675 only; 6 genomes with orthologs for ECD_02310 only