Conservation of cofitness between DZA65_RS19385 and DZA65_RS01985 in Dickeya dianthicola ME23

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS19385 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 1.0 DZA65_RS01985 ornithine carbamoyltransferase 0.93 2
Dickeya dianthicola 67-19 1.00 HGI48_RS18245 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.98 HGI48_RS01915 ornithine carbamoyltransferase 0.65 48
Dickeya dadantii 3937 0.95 DDA3937_RS18310 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.96 DDA3937_RS01940 ornithine carbamoyltransferase 0.77 41
Pectobacterium carotovorum WPP14 0.93 HER17_RS02895 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.87 HER17_RS19500 ornithine carbamoyltransferase low > 75
Rahnella sp. WP5 0.91 EX31_RS03835 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.82 EX31_RS12825 ornithine carbamoyltransferase 0.96 19
Klebsiella michiganensis M5al 0.89 BWI76_RS04465 carbamoyl-phosphate synthase small subunit 0.80 BWI76_RS03010 ornithine carbamoyltransferase 0.55 19
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3637 carbamoyl-phosphate synthase, small subunit 0.80 EX28DRAFT_3461 ornithine carbamoyltransferase — —
Escherichia coli BL21 0.88 ECD_00036 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 0.80 ECD_04120 ornithine carbamoyltransferase 1 0.67 24
Escherichia coli BW25113 0.88 b0032 carA carbamoyl-phosphate synthase small subunit (NCBI) 0.80 b4254 argI ornithine carbamoyltransferase 1 (NCBI) low > 76
Serratia liquefaciens MT49 0.88 IAI46_03190 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.83 IAI46_02320 ornithine carbamoyltransferase 0.65 58
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_03625 Carbamoyl-phosphate synthase small chain 0.80 OHPLBJKB_03782 Ornithine carbamoyltransferase subunit I low > 73
Escherichia coli ECRC62 0.88 BNILDI_08325 carA carbamoyl phosphate synthase small subunit 0.80 BNILDI_07425 argF ornithine carbamoyltransferase low > 75
Escherichia coli ECRC99 0.88 KEDOAH_17210 carA carbamoyl phosphate synthase small subunit 0.80 KEDOAH_16320 argF ornithine carbamoyltransferase — —
Escherichia coli ECRC98 0.88 JDDGAC_14540 carA carbamoyl phosphate synthase small subunit 0.80 JDDGAC_15475 argF ornithine carbamoyltransferase 0.93 2
Escherichia coli ECOR27 0.88 NOLOHH_03275 carA carbamoyl phosphate synthase small subunit 0.80 NOLOHH_04090 argF ornithine carbamoyltransferase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF214 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.80 GFF940 Ornithine carbamoyltransferase (EC 2.1.3.3) low > 78
Escherichia coli ECRC101 0.88 MCAODC_01460 carA carbamoyl phosphate synthase small subunit 0.80 MCAODC_02340 argF ornithine carbamoyltransferase 0.77 52
Escherichia coli ECRC100 0.88 OKFHMN_10945 carA carbamoyl phosphate synthase small subunit 0.80 OKFHMN_11835 argF ornithine carbamoyltransferase low > 80
Escherichia coli ECOR38 0.88 HEPCGN_08930 carA carbamoyl phosphate synthase small subunit 0.80 HEPCGN_10025 argF ornithine carbamoyltransferase 0.84 45
Escherichia coli ECRC102 0.88 NIAGMN_08795 carA carbamoyl phosphate synthase small subunit 0.80 NIAGMN_09685 argF ornithine carbamoyltransferase — —
Escherichia fergusonii Becca 0.88 EFB2_04013 Carbamoyl-phosphate synthase small chain 0.80 EFB2_04281 Ornithine carbamoyltransferase subunit I low > 86
Escherichia coli Nissle 1917 0.88 ECOLIN_RS00175 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.80 ECOLIN_RS24665 ornithine carbamoyltransferase low > 55
Enterobacter sp. TBS_079 0.85 MPMX20_00739 Carbamoyl-phosphate synthase small chain 0.80 MPMX20_00556 Ornithine carbamoyltransferase subunit F 0.86 22
Pantoea sp. MT58 0.84 IAI47_16120 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.80 IAI47_16830 ornithine carbamoyltransferase 0.87 36
Erwinia tracheiphila SCR3 0.84 LU632_RS02755 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.82 LU632_RS20900 argF ornithine carbamoyltransferase 0.57 64
Shewanella loihica PV-4 0.78 Shew_2839 carbamoyl phosphate synthase small subunit (RefSeq) 0.27 Shew_0204 ornithine carbamoyltransferase (RefSeq) 0.87 47
Shewanella oneidensis MR-1 0.76 SO1141 carA carbamoyl-phosphate synthase, small subunit (NCBI ptt file) 0.32 SO0277 argF ornithine carbamoyltransferase (NCBI ptt file) 0.88 44
Shewanella sp. ANA-3 0.74 Shewana3_0967 carbamoyl phosphate synthase small subunit (RefSeq) 0.31 Shewana3_3903 ornithine carbamoyltransferase (RefSeq) 0.87 59
Alteromonas macleodii MIT1002 0.72 MIT1002_01466 Carbamoyl-phosphate synthase small chain 0.25 MIT1002_00469 Ornithine carbamoyltransferase 0.97 24
Dechlorosoma suillum PS 0.68 Dsui_3065 carbamoyl-phosphate synthase, small subunit 0.26 Dsui_3249 ornithine carbamoyltransferase — —
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS13520 carbamoyl phosphate synthase small subunit 0.27 RR42_RS17175 ornithine carbamoyltransferase — —
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS06920 carbamoyl phosphate synthase small subunit 0.25 HSERO_RS07185 Ornithine carbamoyltransferase (EC 2.1.3.3) (from data) — —
Lysobacter sp. OAE881 0.65 ABIE51_RS11625 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.17 ABIE51_RS13410 N-acetylornithine carbamoyltransferase 0.53 61
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.2914.1 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.18 Xcc-8004.2316.1 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) — —
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS14150 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.27 ABZR87_RS00840 ornithine carbamoyltransferase — —
Ralstonia solanacearum PSI07 0.64 RPSI07_RS15245 carbamoyl-phosphate synthase small subunit 0.27 RPSI07_RS12115 ornithine carbamoyltransferase — —
Acidovorax sp. GW101-3H11 0.64 Ac3H11_435 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.27 Ac3H11_1333 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Ralstonia solanacearum UW163 0.64 UW163_RS15510 carbamoyl-phosphate synthase small subunit 0.27 UW163_RS08440 ornithine carbamoyltransferase — —
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS02200 carbamoyl-phosphate synthase small subunit 0.27 RALBFv3_RS05185 ornithine carbamoyltransferase — —
Ralstonia solanacearum GMI1000 0.63 RS_RS07620 carbamoyl-phosphate synthase small subunit 0.27 RS_RS12805 ornithine carbamoyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF4899 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.25 GFF3419 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Variovorax sp. OAS795 0.63 ABID97_RS17090 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.27 ABID97_RS08630 ornithine carbamoyltransferase — —
Variovorax sp. SCN45 0.63 GFF377 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.27 GFF3926 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04402 carbamoyl-phosphate synthase small subunit 0.27 H281DRAFT_04119 ornithine carbamoyltransferase — —
Paraburkholderia graminis OAS925 0.62 ABIE53_003005 carbamoyl-phosphate synthase small subunit 0.27 ABIE53_003354 ornithine carbamoyltransferase — —
Castellaniella sp019104865 MT123 0.59 ABCV34_RS15505 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.28 ABCV34_RS05380 ornithine carbamoyltransferase — —
Rhodospirillum rubrum S1H 0.48 Rru_A2885 Carbamoyl-phosphate synthase, small subunit (NCBI) 0.30 Rru_A3276 Ornithine carbamoyltransferase (NCBI) 0.84 22
Rhodopseudomonas palustris CGA009 0.48 TX73_006555 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.27 TX73_024805 ornithine carbamoyltransferase — —
Bosea sp. OAE506 0.47 ABIE41_RS11975 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.26 ABIE41_RS04335 ornithine carbamoyltransferase — —
Caulobacter crescentus NA1000 0.45 CCNA_02925 carbamoyl-phosphate synthase small chain 0.26 CCNA_02325 ornithine carbamoyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_02925 carbamoyl-phosphate synthase small chain 0.26 CCNA_02325 ornithine carbamoyltransferase low > 67
Desulfovibrio vulgaris Hildenborough JW710 0.39 DVU3113 carA carbamoyl-phosphate synthase, small subunit (TIGR) 0.29 DVU1096 argF ornithine carbamoyltransferase (TIGR) — —
Methanococcus maripaludis JJ 0.37 MMJJ_RS06195 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.29 MMJJ_RS02150 ornithine carbamoyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.37 DvMF_2370 carbamoyl phosphate synthase small subunit (RefSeq) 0.30 DvMF_0046 ornithine carbamoyltransferase (RefSeq) 0.70 22
Mycobacterium tuberculosis H37Rv 0.36 Rv1383 Probable carbamoyl-phosphate synthase small chain CarA (carbamoyl-phosphate synthetase glutamine chain) 0.30 Rv1656 Probable ornithine carbamoyltransferase, anabolic ArgF — —

Not shown: 49 genomes with orthologs for DZA65_RS19385 only; 0 genomes with orthologs for DZA65_RS01985 only