Conservation of cofitness between CSW01_00635 and CSW01_15350 in Vibrio cholerae E7946 ATCC 55056

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00635 diaminopimelate decarboxylase 1.0 CSW01_15350 glycine cleavage system aminomethyltransferase T 0.42 20
Pseudomonas aeruginosa MRSN321 0.67 PFGADD_05528 lysA diaminopimelate decarboxylase 0.63 PFGADD_02648 gcvT glycine cleavage system aminomethyltransferase GcvT low > 99
Pseudomonas aeruginosa PUPa3 0.67 NPBIFN_05604 lysA diaminopimelate decarboxylase 0.63 NPBIFN_02680 gcvT glycine cleavage system aminomethyltransferase GcvT low > 101
Alteromonas macleodii MIT1002 0.67 MIT1002_00160 Diaminopimelate decarboxylase 0.25 MIT1002_02973 Aminomethyltransferase low > 70
Pseudomonas aeruginosa PA14 0.67 IKLFDK_27065 diaminopimelate decarboxylase 0.63 IKLFDK_12005 glycine cleavage system aminomethyltransferase GcvT low > 98
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.61 Pf1N1B4_623 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) — —
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.61 PfGW456L13_1866 Aminomethyltransferase (EC 2.1.2.10) (from data) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_0182 diaminopimelate decarboxylase 0.63 Psyr_1095 Glycine cleavage system T protein — —
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_0182 diaminopimelate decarboxylase 0.63 Psyr_1095 Glycine cleavage system T protein — —
Pseudomonas protegens RBAN4 0.66 FABNJH_30325 lysA diaminopimelate decarboxylase 0.64 FABNJH_23965 gcvT glycine cleavage system aminomethyltransferase GcvT — —
Pseudomonas sp. DMC3 0.66 GFF367 Diaminopimelate decarboxylase 0.62 GFF5171 Aminomethyltransferase — —
Pseudomonas sp. RS175 0.66 PFR28_04375 Diaminopimelate decarboxylase 0.63 PFR28_03385 Aminomethyltransferase — —
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_12740 diaminopimelate decarboxylase 0.62 AO356_18160 glycine cleavage system protein T — —
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.63 Pf6N2E2_5556 Aminomethyltransferase (EC 2.1.2.10) (from data) — —
Pseudomonas lactucae CFBP13502 0.65 GEMAOFIL_05654 Diaminopimelate decarboxylase 0.64 GEMAOFIL_04610 Aminomethyltransferase low > 96
Pseudomonas putida KT2440 0.65 PP_5227 diaminopimelate decarboxylase 0.63 PP_0986 aminomethyltransferase low > 96
Pseudomonas segetis P6 0.65 ACVTMO_RS22510 lysA diaminopimelate decarboxylase 0.63 ACVTMO_RS17915 gcvT glycine cleavage system aminomethyltransferase GcvT low > 75
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_09035 diaminopimelate decarboxylase 0.61 AO353_03510 glycine cleavage system protein T — —
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS29265 diaminopimelate decarboxylase 0.64 PFLU_RS24010 glycine cleavage system aminomethyltransferase GcvT — —
Pseudomonas fluorescens SBW25 0.64 PFLU_RS29265 diaminopimelate decarboxylase 0.64 PFLU_RS24010 glycine cleavage system aminomethyltransferase GcvT low > 109
Pseudomonas sp. S08-1 0.64 OH686_13800 diaminopimelate decarboxylase 0.25 OH686_11175 glycine cleavage system T protein low > 80
Pseudomonas simiae WCS417 0.64 PS417_27580 diaminopimelate decarboxylase 0.63 PS417_22370 Aminomethyltransferase (EC 2.1.2.10) (from data) — —
Pseudomonas orientalis W4I3 0.64 QF045_RS01945 diaminopimelate decarboxylase 0.64 QF045_RS24495 glycine cleavage system aminomethyltransferase GcvT low > 93
Pseudomonas sp. FW215-L2 0.63 GFF4508 Diaminopimelate decarboxylase 0.63 GFF4874 Aminomethyltransferase — —
Pseudomonas sp. SVBP6 0.63 COO64_RS01255 lysA diaminopimelate decarboxylase 0.64 COO64_RS04440 gcvT glycine cleavage system aminomethyltransferase GcvT low > 91
Pseudomonas sp. BP01 0.62 JOY50_RS22595 lysA diaminopimelate decarboxylase 0.63 JOY50_RS11290 gcvT glycine cleavage system aminomethyltransferase GcvT low > 84
Collimonas humicola GW821-FHT01A05 0.57 MPMX01_00532 Diaminopimelate decarboxylase 0.59 MPMX01_02620 Aminomethyltransferase 0.24 47
Desulfovibrio vulgaris Miyazaki F 0.54 DvMF_0353 diaminopimelate decarboxylase (RefSeq) 0.28 DvMF_0341 glycine cleavage system T protein (RefSeq) low > 51
Variovorax sp. SCN45 0.52 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.55 GFF6476 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.58 GFF5213 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) low > 92
Desulfovibrio vulgaris Hildenborough JW710 0.51 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) 0.28 DVU1684 gcvT glycine cleavage system T protein (TIGR) low > 55
Phaeobacter inhibens DSM 17395 0.48 PGA1_c03470 diaminopimelate decarboxylase LysA 0.46 PGA1_78p00290 aminomethyltransferase GcvT — —
Sinorhizobium meliloti 1021 0.48 SMc00723 diaminopimelate DAP decarboxylase 0.55 SMc02047 glycine cleavage system aminomethyltransferase T — —
Dinoroseobacter shibae DFL-12 0.47 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.38 Dshi_2682 glycine cleavage system T protein (RefSeq) — —
Rhodopseudomonas palustris CGA009 0.47 TX73_024635 diaminopimelate decarboxylase 0.56 TX73_019925 glycine cleavage system aminomethyltransferase GcvT — —
Agrobacterium fabrum C58 0.47 Atu3601 diaminopimelate decarboxylase 0.54 Atu1464 glycine cleavage system T protein, aminomethyltransferase — —
Rhizobium sp. OAE497 0.47 ABIE40_RS17530 diaminopimelate decarboxylase 0.55 ABIE40_RS09940 glycine cleavage system aminomethyltransferase GcvT low > 107
Xanthobacter sp. DMC5 0.47 GFF3837 Diaminopimelate decarboxylase 0.44 GFF1876 Aminomethyltransferase — —
Azospirillum sp. SherDot2 0.46 MPMX19_05819 Diaminopimelate decarboxylase 0.54 MPMX19_01029 Aminomethyltransferase — —
Azospirillum brasilense Sp245 0.45 AZOBR_RS16945 diaminopimelate decarboxylase 0.54 AZOBR_RS10470 aminomethyltransferase — —
Sphingobium sp. HT1-2 0.45 GFF3795 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.39 GFF1923 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) low > 95
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_02296 diaminopimelate decarboxylase 0.44 CCNA_03465 glycine cleavage system aminomethyltransferase T — —
Caulobacter crescentus NA1000 0.44 CCNA_02296 diaminopimelate decarboxylase 0.44 CCNA_03465 glycine cleavage system aminomethyltransferase T — —
Magnetospirillum magneticum AMB-1 0.44 AMB_RS22725 diaminopimelate decarboxylase 0.50 AMB_RS03925 glycine cleavage system protein T — —
Rhodospirillum rubrum S1H 0.43 Rru_A0396 Diaminopimelate decarboxylase (NCBI) 0.50 Rru_A3051 Glycine cleavage system T protein (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS12545 diaminopimelate decarboxylase 0.46 A4249_RS09325 glycine cleavage system aminomethyltransferase GcvT low > 48
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.43 Ga0059261_3256 glycine cleavage system T protein low > 68
Bosea sp. OAE506 0.38 ABIE41_RS08740 diaminopimelate decarboxylase 0.46 ABIE41_RS22930 glycine cleavage system aminomethyltransferase GcvT — —
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS12130 diaminopimelate decarboxylase 0.26 ABZR86_RS18875 glycine cleavage system aminomethyltransferase GcvT low > 74
Rhodanobacter denitrificans MT42 0.36 LRK55_RS11215 diaminopimelate decarboxylase 0.26 LRK55_RS05280 glycine cleavage system aminomethyltransferase GcvT low > 63
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS11485 diaminopimelate decarboxylase 0.26 LRK54_RS05510 glycine cleavage system aminomethyltransferase GcvT low > 59
Rhodanobacter sp000427505 FW510-R12 0.36 LRK53_RS17040 diaminopimelate decarboxylase 0.27 LRK53_RS04495 glycine cleavage system aminomethyltransferase GcvT low > 59
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.27 OKGIIK_01305 gcvT glycine cleavage system aminomethyltransferase GcvT low > 53
Lysobacter sp. OAE881 0.35 ABIE51_RS13675 diaminopimelate decarboxylase 0.26 ABIE51_RS16365 glycine cleavage system aminomethyltransferase GcvT low > 62
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS19950 diaminopimelate decarboxylase 0.31 ABI39_RS18950 glycine cleavage system aminomethyltransferase GcvT low > 72
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.31 HMPREF1078_RS10420 glycine cleavage system aminomethyltransferase GcvT low > 61
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.32 HMPREF1058_RS04685 glycine cleavage system aminomethyltransferase GcvT low > 67
Bacteroides ovatus ATCC 8483 0.31 BACOVA_00215 diaminopimelate decarboxylase 0.29 BACOVA_05378 aminomethyltransferase low > 96
Bacteroides thetaiotaomicron VPI-5482 0.31 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.29 BT4584 putative aminomethyltransferase (NCBI ptt file) low > 81
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS10180 diaminopimelate decarboxylase 0.28 ABZR88_RS21210 glycine cleavage system aminomethyltransferase GcvT — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_02390 diaminopimelate decarboxylase 0.29 CA264_00210 glycine cleavage system protein T — —
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.29 HMPREF1181_RS13255 glycine cleavage system aminomethyltransferase GcvT low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS09650 diaminopimelate decarboxylase 0.29 CA265_RS23960 glycine cleavage system protein T low > 88

Not shown: 25 genomes with orthologs for CSW01_00635 only; 17 genomes with orthologs for CSW01_15350 only