Conservation of cofitness between CSW01_13155 and CSW01_13810 in Vibrio cholerae E7946 ATCC 55056

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13155 ribonuclease R 1.0 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 0.85 5
Pectobacterium carotovorum WPP14 0.62 HER17_RS03835 ribonuclease R 0.80 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) low > 75
Erwinia amylovora T8 0.62 OLJFJH_02470 ribonuclease R 0.78 OLJFJH_04150 phosphoenolpyruvate carboxykinase (ATP) low > 58
Escherichia coli ECRC100 0.62 OKFHMN_12220 rnr ribonuclease R 0.81 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) low > 79
Escherichia coli ECRC102 0.62 NIAGMN_10070 rnr ribonuclease R 0.81 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) low > 80
Escherichia coli ECRC99 0.62 KEDOAH_15935 rnr ribonuclease R 0.81 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli ECRC101 0.62 MCAODC_02735 rnr ribonuclease R 0.81 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) low > 87
Escherichia coli ECRC98 0.62 JDDGAC_15860 rnr ribonuclease R 0.81 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) low > 87
Dickeya dianthicola 67-19 0.61 HGI48_RS17315 ribonuclease R 0.81 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) low > 71
Escherichia fergusonii Becca 0.61 EFB2_04356 Ribonuclease R 0.81 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Escherichia coli Nissle 1917 0.61 ECOLIN_RS24265 ribonuclease R 0.81 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) low > 55
Escherichia coli BW25113 0.61 b4179 vacB putative enzyme (VIMSS) 0.81 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.81 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 78
Escherichia coli ECOR27 0.61 NOLOHH_04485 rnr ribonuclease R 0.81 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) low > 76
Escherichia coli BL21 0.61 ECD_04046 exoribonuclease R, RNase R 0.81 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_03863 Ribonuclease R 0.81 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) low > 74
Escherichia coli ECRC62 0.61 BNILDI_07005 rnr ribonuclease R 0.81 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) low > 75
Rahnella sp. WP5 0.61 EX31_RS08785 ribonuclease R 0.79 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) low > 89
Escherichia coli ECOR38 0.61 HEPCGN_10450 rnr ribonuclease R 0.81 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) low > 88
Klebsiella michiganensis M5al 0.61 BWI76_RS02575 exoribonuclease R 0.79 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) low > 92
Klebsiella pneumoniae MKP103 0.61 KDGMDA_11075 ribonuclease R 0.81 KDGMDA_06970 phosphoenolpyruvate carboxykinase (ATP) low > 95
Dickeya dianthicola ME23 0.61 DZA65_RS18405 ribonuclease R 0.81 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) low > 75
Dickeya dadantii 3937 0.61 DDA3937_RS17260 ribonuclease R 0.81 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) low > 74
Erwinia tracheiphila SCR3 0.61 LU632_RS21750 rnr ribonuclease R 0.78 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) low > 73
Erwinia tracheiphila HP pepo 2.2 0.61 IJEDHG_13230 rnr ribonuclease R 0.78 IJEDHG_11970 pckA phosphoenolpyruvate carboxykinase (ATP) low > 61
Enterobacter sp. TBS_079 0.60 MPMX20_00460 Ribonuclease R 0.79 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) low > 85
Enterobacter asburiae PDN3 0.60 EX28DRAFT_3376 ribonuclease R 0.79 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) low > 76
Serratia liquefaciens MT49 0.60 IAI46_01660 ribonuclease R 0.81 IAI46_23770 phosphoenolpyruvate carboxykinase (ATP) low > 87
Pantoea agglomerans CFBP13505 P0401 0.60 PagCFBP13505_RS11220 ribonuclease R 0.77 PagCFBP13505_RS18350 phosphoenolpyruvate carboxykinase (ATP) low > 74
Pantoea sp. MT58 0.60 IAI47_02625 ribonuclease R 0.77 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) low > 76
Shewanella loihica PV-4 0.57 Shew_3289 ribonuclease R (RefSeq) 0.37 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) low > 60
Shewanella sp. ANA-3 0.56 Shewana3_0697 RNAse R (RefSeq) 0.36 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.55 SO3935 vacB ribonuclease R (NCBI ptt file) 0.36 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.54 Sama_3067 exoribonuclease II (RefSeq) 0.38 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) low > 62
Alteromonas macleodii MIT1002 0.52 MIT1002_03606 Ribonuclease R 0.36 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] low > 70
Pseudomonas aeruginosa PA14 0.48 IKLFDK_28865 ribonuclease R 0.34 IKLFDK_27515 phosphoenolpyruvate carboxykinase low > 98
Pseudomonas aeruginosa MRSN321 0.47 DY961_RS10465 rnr;go_function=RNA ribonuclease R 0.34 DY961_RS11825 phosphoenolpyruvate carboxykinase — —
Pseudomonas aeruginosa PUPa3 0.47 DQ20_RS51590 rnr;go_function=RNA ribonuclease R 0.34 DQ20_RS50285 phosphoenolpyruvate carboxykinase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_0579 RNAse R 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_0579 RNAse R 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_144 3'-to-5' exoribonuclease RNase R 0.33 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 87
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_13200 exoribonuclease R 0.33 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] low > 101
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R 0.34 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) — —
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_08610 exoribonuclease R 0.32 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] low > 104
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R 0.32 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 103
Pseudomonas sp. RS175 0.47 PFR28_05130 Ribonuclease R 0.34 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) low > 88
Pseudomonas segetis P6 0.47 MPMX49_04145 Ribonuclease R 0.32 MPMX49_00777 Phosphoenolpyruvate carboxykinase (ATP) low > 75
Kangiella aquimarina DSM 16071 0.47 B158DRAFT_1989 ribonuclease R 0.76 B158DRAFT_2395 phosphoenolpyruvate carboxykinase (ATP) low > 40
Pseudomonas lactucae CFBP13502 0.47 GEMAOFIL_00747 Ribonuclease R 0.35 GEMAOFIL_00469 Phosphoenolpyruvate carboxykinase (ATP) low > 96
Pseudomonas sp. DMC3 0.47 GFF3229 Ribonuclease R 0.33 GFF4175 Phosphoenolpyruvate carboxykinase (ATP) low > 89
Pseudomonas sp. SVBP6 0.47 COO64_RS17955 rnr ribonuclease R 0.33 COO64_RS00660 phosphoenolpyruvate carboxykinase low > 93
Pseudomonas orientalis W4I3 0.47 QF045_RS05605 ribonuclease R 0.35 QF045_RS04340 phosphoenolpyruvate carboxykinase low > 93
Pseudomonas simiae WCS417 0.46 PS417_02555 exoribonuclease R 0.34 PS417_01210 hypothetical protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS02625 ribonuclease R 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase low > 109
Pseudomonas sp. S08-1 0.46 OH686_15910 ribonuclease R 0.32 OH686_11060 phosphoenolpyruvate carboxykinase (ATP) low > 80
Pseudomonas fluorescens SBW25 0.46 PFLU_RS02625 ribonuclease R 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase low > 109
Pseudomonas sp. BP01 0.46 JOY50_RS17320 rnr ribonuclease R 0.33 JOY50_RS18315 phosphoenolpyruvate carboxykinase low > 84
Pseudomonas stutzeri RCH2 0.46 Psest_0691 ribonuclease R 0.33 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) low > 67
Marinobacter adhaerens HP15 0.43 HP15_622 exoribonuclease R 0.36 HP15_3498 phosphoenolpyruvate carboxykinase (ATP) — —
Rhizobium sp. OAE497 0.23 ABIE40_RS07350 ribonuclease R 0.40 ABIE40_RS19415 phosphoenolpyruvate carboxykinase low > 107
Agrobacterium fabrum C58 0.22 Atu1303 exoribonuclease 0.42 Atu0035 phosphoenolpyruvate carboxykinase low > 89
Rhodopseudomonas palustris CGA009 0.22 TX73_016160 ribonuclease R 0.42 TX73_001865 phosphoenolpyruvate carboxykinase — —
Sinorhizobium meliloti 1021 0.22 SMc01365 exoribonuclease II protein 0.41 SMc02562 phosphoenolpyruvate carboxykinase low > 103
Phaeobacter inhibens DSM 17395 0.22 PGA1_c36430 putative ribonuclease R 0.39 PGA1_c01140 phosphoenolpyruvate carboxykinase low > 62
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_3266 ribonuclease R 0.39 Ga0059261_0913 phosphoenolpyruvate carboxykinase (ATP) low > 68
Xanthobacter sp. DMC5 0.21 GFF1081 Ribonuclease R 0.40 GFF4136 Phosphoenolpyruvate carboxykinase (ATP) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.21 Echvi_0669 ribonuclease R 0.42 Echvi_2957 phosphoenolpyruvate carboxykinase (ATP) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_17355 ribonuclease R 0.44 CA264_05270 phosphoenolpyruvate carboxykinase (ATP) — —
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS10530 ribonuclease R 0.41 CA265_RS23490 phosphoenolpyruvate carboxykinase (ATP) low > 88
Sphingobium sp. HT1-2 0.20 GFF3533 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.40 GFF3825 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 95
Cellulophaga baltica 18 0.20 M666_RS05085 ribonuclease R 0.43 M666_RS03005 phosphoenolpyruvate carboxykinase (ATP) — —
Dinoroseobacter shibae DFL-12 0.20 Dshi_0015 ribonuclease R (RefSeq) 0.39 Dshi_0213 Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) low > 64
Bosea sp. OAE506 0.18 ABIE41_RS18140 ribonuclease R 0.40 ABIE41_RS02665 phosphoenolpyruvate carboxykinase low > 77

Not shown: 39 genomes with orthologs for CSW01_13155 only; 7 genomes with orthologs for CSW01_13810 only