Conservation of cofitness between CSW01_02460 and CSW01_13635 in Vibrio cholerae E7946 ATCC 55056

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02460 type IV pili twitching motility protein PilT 1.0 CSW01_13635 thiol:disulfide interchange protein DsbD 0.83 20
Shewanella amazonensis SB2B 0.75 Sama_2476 twitching motility protein (RefSeq) 0.42 Sama_0538 dipZ thiol:disulfide interchange protein precursor (RefSeq) low > 62
Shewanella sp. ANA-3 0.74 Shewana3_1195 pilus retraction ATPase PilT (RefSeq) 0.43 Shewana3_3576 dipZ thiol:disulfide interchange protein precursor (RefSeq) low > 73
Shewanella oneidensis MR-1 0.74 SO3351 pilT twitching motility protein PilT (NCBI ptt file) 0.44 SO0696 dsbD thiol:disulfide interchange protein DsbD (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.74 Shew_1138 twitching motility protein (RefSeq) 0.42 Shew_3266 dipZ thiol:disulfide interchange protein precursor (RefSeq) low > 60
Acinetobacter baumannii LAC-4 0.73 RR41_RS14800 type IV pilus twitching motility protein PilT 0.24 RR41_RS00770 protein-disulfide reductase DsbD low > 55
Alteromonas macleodii MIT1002 0.72 MIT1002_03060 Twitching mobility protein 0.38 MIT1002_03939 Thiol:disulfide interchange protein DsbD precursor — —
Acinetobacter radioresistens SK82 0.72 MPMX26_02405 Twitching mobility protein 0.21 MPMX26_03164 Thiol:disulfide interchange protein DsbD low > 36
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_0195 pilus retraction protein PilT 0.32 B158DRAFT_0153 Thiol:disulfide interchange protein low > 40
Pseudomonas sp. S08-1 0.70 OH686_10970 Twitching motility protein PilT 0.23 OH686_07580 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase — —
Pseudomonas segetis P6 0.69 ACVTMO_RS03025 pilT type IV pilus twitching motility protein PilT 0.26 ACVTMO_RS20330 protein-disulfide reductase DsbD — —
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_2343 Twitching motility protein PilT 0.27 Pf1N1B4_210 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) low > 87
Pseudomonas stutzeri RCH2 0.69 Psest_0285 pilus retraction protein PilT 0.27 Psest_1603 Thiol:disulfide interchange protein low > 67
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_13430 twitching motility protein PilT 0.28 AO356_02870 thiol:disulfide interchange protein — —
Pseudomonas sp. DMC3 0.69 GFF208 Twitching mobility protein 0.29 GFF4549 Thiol:disulfide interchange protein DsbD — —
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_4602 Twitching motility protein PilT 0.28 Pf6N2E2_2398 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) — —
Pseudomonas sp. RS175 0.69 PFR28_04241 Twitching mobility protein 0.27 PFR28_01029 Thiol:disulfide interchange protein DsbD — —
Pseudomonas aeruginosa PUPa3 0.69 DQ20_RS37345 pilT;inference=COORDINATES type IV pilus twitching motility protein PilT 0.24 DQ20_RS55390 protein-disulfide reductase DsbD low > 101
Pseudomonas aeruginosa MRSN321 0.69 DY961_RS21955 pilT;inference=COORDINATES type IV pilus twitching motility protein PilT 0.24 DY961_RS05265 protein-disulfide reductase DsbD low > 100
Pseudomonas aeruginosa PA14 0.69 IKLFDK_23445 type IV pilus twitching motility protein PilT 0.24 IKLFDK_12170 Thiol:disulfide interchange protein DsbD 2 low > 98
Marinobacter adhaerens HP15 0.68 HP15_289 twitching motility protein PilT 0.30 HP15_2101 membrane protein containing cytochrome c assembly protein, transmembrane region domain low > 73
Dechlorosoma suillum PS 0.68 Dsui_0604 pilus retraction protein PilT 0.31 Dsui_0718 thiol:disulfide interchange protein — —
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_1012 Twitching motility protein PilT 0.28 PfGW456L13_2298 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) low > 87
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_08155 twitching motility protein PilT 0.25 AO353_19365 thiol:disulfide interchange protein low > 101
Methylophilus sp. DMC18 0.68 GFF865 Twitching mobility protein 0.29 GFF2039 Thiol:disulfide interchange protein DsbD — —
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_0478 pilus retraction ATPase PilT 0.24 Psyr_4398 Protein-disulfide reductase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_0478 pilus retraction ATPase PilT 0.24 Psyr_4398 Protein-disulfide reductase — —
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS01220 type IV pilus twitching motility protein PilT 0.28 ABZR87_RS02695 protein-disulfide reductase DsbD — —
Ralstonia solanacearum UW163 0.66 UW163_RS08055 type IV pili twitching motility protein PilT 0.27 UW163_RS06570 protein-disulfide reductase DsbD — —
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS05570 type IV pili twitching motility protein PilT 0.27 RALBFv3_RS07045 protein-disulfide reductase DsbD low > 76
Ralstonia solanacearum GMI1000 0.65 RS_RS13430 type IV pili twitching motility protein PilT 0.27 RS_RS14985 thiol:disulfide interchange protein DsbD — —
Ralstonia solanacearum PSI07 0.65 RPSI07_RS11730 type IV pili twitching motility protein PilT 0.28 RPSI07_RS10195 protein-disulfide reductase DsbD low > 81
Pseudomonas lactucae CFBP13502 0.65 GEMAOFIL_05481 Twitching mobility protein 0.25 GEMAOFIL_04105 Thiol:disulfide interchange protein DsbD — —
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS17350 twitching motility protein PilT 0.29 RR42_RS19110 thiol:disulfide interchange protein — —
Pseudomonas orientalis W4I3 0.64 QF045_RS01120 type IV pilus twitching motility protein PilT 0.26 QF045_RS21665 protein-disulfide reductase DsbD — —
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS28365 type IV pilus twitching motility protein PilT 0.25 PFLU_RS21490 protein-disulfide reductase DsbD — —
Pseudomonas fluorescens SBW25 0.64 PFLU_RS28365 type IV pilus twitching motility protein PilT 0.25 PFLU_RS21490 protein-disulfide reductase DsbD — —
Pseudomonas simiae WCS417 0.63 PS417_26720 twitching motility protein PilT 0.26 PS417_19525 thiol:disulfide interchange protein — —
Pseudomonas sp. SVBP6 0.54 COO64_RS13005 type IV pilus twitching motility protein PilT 0.24 COO64_RS18765 dsbD protein-disulfide reductase DsbD low > 93
Pseudomonas putida KT2440 0.50 PP_5093 twitching motility protein 0.25 PP_0561 thiol/disulfide interchange protein 1 low > 96
Pseudomonas sp. BP01 0.50 JOY50_RS20915 type IV pilus twitching motility protein PilT 0.26 JOY50_RS23140 protein-disulfide reductase DsbD low > 84
Pectobacterium carotovorum WPP14 0.48 HER17_RS03815 type IV pilus twitching motility protein PilT 0.47 HER17_RS18850 protein-disulfide reductase DsbD low > 75
Serratia liquefaciens MT49 0.48 IAI46_21405 type IV pilus twitching motility protein PilT 0.45 IAI46_01465 protein-disulfide reductase DsbD low > 87
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS19000 twitching motility protein PilT 0.29 HSERO_RS00715 thiol:disulfide interchange protein — —
Dickeya dadantii 3937 0.47 DDA3937_RS17295 type IV pilus twitching motility protein PilT 0.43 DDA3937_RS02705 protein-disulfide reductase DsbD low > 74
Enterobacter sp. TBS_079 0.47 MPMX20_03808 putative protein YggR 0.45 MPMX20_00416 Thiol:disulfide interchange protein DsbD low > 85
Dickeya dianthicola 67-19 0.46 HGI48_RS17340 type IV pilus twitching motility protein PilT 0.42 HGI48_RS02680 protein-disulfide reductase DsbD low > 71
Dickeya dianthicola ME23 0.46 DZA65_RS18430 type IV pilus twitching motility protein PilT 0.42 DZA65_RS02835 protein-disulfide reductase DsbD low > 75
Klebsiella pneumoniae MKP103 0.46 KDGMDA_04610 twitching motility protein PilT 0.45 KDGMDA_10805 Thiol:disulfide interchange protein DsbD low > 95
Escherichia fergusonii Becca 0.45 EFB2_00952 putative protein YggR 0.47 EFB2_04399 Thiol:disulfide interchange protein DsbD low > 86
Enterobacter asburiae PDN3 0.45 EX28DRAFT_2988 pilus retraction protein PilT 0.46 EX28DRAFT_3333 Thiol:disulfide interchange protein 0.42 39
Escherichia coli ECOR38 0.45 HEPCGN_18565 yggR Uncharacterized protein YggR 0.46 HEPCGN_10675 dsbD protein-disulfide reductase DsbD low > 88
Escherichia coli Nissle 1917 0.45 ECOLIN_RS16410 type IV pilus twitching motility protein PilT 0.47 ECOLIN_RS24030 protein-disulfide reductase DsbD low > 55
Escherichia coli ECRC62 0.45 BNILDI_09710 yggR Uncharacterized protein YggR 0.47 BNILDI_06775 dsbD protein-disulfide reductase DsbD low > 75
Escherichia coli ECOR27 0.45 NOLOHH_11130 yggR Uncharacterized protein YggR 0.47 NOLOHH_04715 dsbD protein-disulfide reductase DsbD low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF3053 Twitching motility protein PilT 0.46 GFF2016 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) low > 78
Escherichia coli BL21 0.45 ECD_02780 putative PilT family AAA+ ATPase 0.47 ECD_04006 thiol:disulfide interchange protein and activator of DsbC low > 61
Escherichia coli BW25113 0.45 b2950 yggR putative protein transport (VIMSS) 0.47 b4136 dipZ thiol:disulfide interchange protein precursor (NCBI) low > 76
Escherichia coli ECRC101 0.45 MCAODC_09780 yggR Uncharacterized protein YggR 0.46 MCAODC_02960 dsbD protein-disulfide reductase DsbD low > 87
Escherichia coli ECRC99 0.45 KEDOAH_08880 yggR Uncharacterized protein YggR 0.47 KEDOAH_15715 dsbD protein-disulfide reductase DsbD — —
Erwinia tracheiphila HP pepo 2.2 0.45 IJEDHG_03445 type IV pili twitching motility protein PilT 0.40 IJEDHG_07065 Thiol:disulfide interchange protein DsbD low > 61
Escherichia coli ECRC100 0.45 OKFHMN_19260 yggR Uncharacterized protein YggR 0.47 OKFHMN_12450 dsbD protein-disulfide reductase DsbD low > 79
Escherichia coli ECRC98 0.45 JDDGAC_22890 yggR Uncharacterized protein YggR 0.47 JDDGAC_16085 dsbD protein-disulfide reductase DsbD low > 87
Escherichia coli ECRC102 0.45 NIAGMN_17025 yggR Uncharacterized protein YggR 0.47 NIAGMN_10295 dsbD protein-disulfide reductase DsbD low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00766 putative protein YggR 0.47 OHPLBJKB_03907 Thiol:disulfide interchange protein DsbD low > 74
Klebsiella michiganensis M5al 0.44 BWI76_RS24095 twitching motility protein PilT 0.47 BWI76_RS02315 protein-disulfide reductase DsbD low > 92
Rahnella sp. WP5 0.44 EX31_RS02680 type IV pilus twitching motility protein PilT 0.46 EX31_RS08975 protein-disulfide reductase DsbD low > 89
Pantoea sp. MT58 0.44 IAI47_03600 type IV pilus twitching motility protein PilT 0.43 IAI47_17335 protein-disulfide reductase DsbD low > 76
Pantoea agglomerans CFBP13505 P0401 0.44 PagCFBP13505_RS16095 type IV pilus twitching motility protein PilT 0.44 PagCFBP13505_RS09505 protein-disulfide reductase DsbD low > 74
Erwinia amylovora T8 0.42 OLJFJH_08535 type IV pili twitching motility protein PilT 0.42 OLJFJH_02625 protein-disulfide reductase DsbD low > 58
Erwinia tracheiphila SCR3 0.20 LU632_RS25695 traJ plasmid transfer ATPase TraJ 0.40 LU632_RS01840 protein-disulfide reductase DsbD low > 73

Not shown: 17 genomes with orthologs for CSW01_02460 only; 6 genomes with orthologs for CSW01_13635 only