| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00740 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 1.0 | CSW01_11785 | | exonuclease V subunit gamma | 0.51 | 10 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.57 | OHPLBJKB_00238 | | Ribosomal RNA small subunit methyltransferase D | 0.39 | OHPLBJKB_00908 | | RecBCD enzyme subunit RecC | low | > 73 |
| Escherichia coli BL21 | 0.57 | ECD_03314 | | 16S rRNA m(2)G966 methyltransferase, SAM-dependent | 0.39 | ECD_02670 | | exonuclease V (RecBCD complex), gamma chain | low | > 61 |
| Escherichia fergusonii Becca | 0.56 | EFB2_00351 | | Ribosomal RNA small subunit methyltransferase D | 0.39 | EFB2_01062 | | RecBCD enzyme subunit RecC | low | > 86 |
| Escherichia coli ECOR38 | 0.56 | HEPCGN_15525 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.39 | HEPCGN_19295 | recC | exodeoxyribonuclease V subunit gamma | low | > 87 |
| Escherichia coli ECRC62 | 0.56 | BNILDI_03015 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.39 | BNILDI_10405 | recC | exodeoxyribonuclease V subunit gamma | low | > 75 |
| Escherichia coli BW25113 | 0.56 | b3465 | yhhF | predicted methyltransferase (NCBI) | 0.39 | b2822 | recC | exonuclease V (RecBCD complex), gamma chain (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.56 | ECOLIN_RS19815 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.39 | ECOLIN_RS15840 | | exodeoxyribonuclease V subunit gamma | low | > 55 |
| Escherichia coli ECOR27 | 0.56 | NOLOHH_08500 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.39 | NOLOHH_11925 | recC | exodeoxyribonuclease V subunit gamma | — | — |
| Escherichia coli ECRC101 | 0.56 | MCAODC_07225 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.39 | MCAODC_10565 | recC | exodeoxyribonuclease V subunit gamma | — | — |
| Escherichia coli ECRC98 | 0.56 | JDDGAC_20325 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.39 | JDDGAC_23705 | recC | exodeoxyribonuclease V subunit gamma | — | — |
| Escherichia coli ECRC100 | 0.56 | OKFHMN_16695 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.39 | OKFHMN_20040 | recC | exodeoxyribonuclease V subunit gamma | — | — |
| Escherichia coli ECRC99 | 0.56 | KEDOAH_11445 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.39 | KEDOAH_08090 | recC | exodeoxyribonuclease V subunit gamma | — | — |
| Escherichia coli ECRC102 | 0.56 | NIAGMN_14465 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.39 | NIAGMN_17810 | recC | exodeoxyribonuclease V subunit gamma | — | — |
| Pectobacterium carotovorum WPP14 | 0.56 | HER17_RS00465 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.36 | HER17_RS16535 | | exodeoxyribonuclease V subunit gamma | low | > 75 |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_4299 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.37 | EX28DRAFT_2897 | | DNA helicase/exodeoxyribonuclease V, gamma subunit (EC 3.1.11.5) | — | — |
| Erwinia tracheiphila SCR3 | 0.54 | LU632_RS19285 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.40 | LU632_RS06180 | recC | exodeoxyribonuclease V subunit gamma | — | — |
| Enterobacter sp. TBS_079 | 0.54 | MPMX20_04342 | | Ribosomal RNA small subunit methyltransferase D | 0.37 | MPMX20_03685 | | RecBCD enzyme subunit RecC | low | > 85 |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS26405 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.39 | BWI76_RS23240 | | exonuclease V subunit gamma | 0.22 | 30 |
| Dickeya dadantii 3937 | 0.53 | DDA3937_RS00630 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.26 | DDA3937_RS11085 | | exodeoxyribonuclease V subunit gamma | — | — |
| Dickeya dianthicola 67-19 | 0.53 | HGI48_RS20760 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.26 | HGI48_RS11105 | | exodeoxyribonuclease V subunit gamma | — | — |
| Serratia liquefaciens MT49 | 0.53 | IAI46_00920 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.38 | IAI46_20415 | | exodeoxyribonuclease V subunit gamma | — | — |
| Dickeya dianthicola ME23 | 0.52 | DZA65_RS21770 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.25 | DZA65_RS11485 | | exodeoxyribonuclease V subunit gamma | — | — |
| Pantoea sp. MT58 | 0.52 | IAI47_01535 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.38 | IAI47_03955 | | exodeoxyribonuclease V subunit gamma | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.51 | GFF540 | | 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) | 0.39 | GFF1303 | | Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) | low | > 78 |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_3973 | | putative methyltransferase (RefSeq) | 0.30 | Shewana3_2245 | | exodeoxyribonuclease V, gamma subunit (RefSeq) | — | — |
| Rahnella sp. WP5 | 0.51 | EX31_RS14835 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.25 | EX31_RS20740 | | exodeoxyribonuclease V subunit gamma | — | — |
| Erwinia amylovora T8 | 0.49 | OLJFJH_04385 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.38 | OLJFJH_09090 | | exodeoxyribonuclease V subunit gamma | — | — |
| Shewanella oneidensis MR-1 | 0.47 | SO4587 | | conserved hypothetical protein TIGR00095 (NCBI ptt file) | 0.30 | SO2149 | recC | exodeoxyribonuclease V, gamma subunit (NCBI ptt file) | — | — |
| Marinobacter adhaerens HP15 | 0.47 | HP15_3491 | | conserved hypothetical protein | 0.25 | HP15_3714 | | exodeoxyribonuclease V, gamma subunit | low | > 73 |
| Shewanella amazonensis SB2B | 0.47 | Sama_3469 | | hypothetical protein (RefSeq) | 0.30 | Sama_1900 | | exodeoxyribonuclease V, gamma subunit (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.46 | Shew_3607 | | putative methyltransferase (RefSeq) | 0.31 | Shew_2129 | | exodeoxyribonuclease V, gamma subunit (RefSeq) | — | — |
| Pseudomonas sp. BP01 | 0.44 | JOY50_RS20810 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.27 | JOY50_RS27640 | recC | exodeoxyribonuclease V subunit gamma | — | — |
| Pseudomonas putida KT2440 | 0.43 | PP_5114 | | putative adenine methyltransferase | 0.27 | PP_4674 | | ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease, recombinase subunit | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.43 | Psyr_4754 | | 16S rRNA m(2)G-966 methyltransferase | 0.27 | Psyr_0680 | | DNA helicase/exodeoxyribonuclease V, gamma subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.43 | Psyr_4754 | | 16S rRNA m(2)G-966 methyltransferase | 0.27 | Psyr_0680 | | DNA helicase/exodeoxyribonuclease V, gamma subunit | low | > 86 |
| Pseudomonas sp. SVBP6 | 0.42 | COO64_RS12895 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.28 | COO64_RS02675 | recC | exodeoxyribonuclease V subunit gamma | low | > 93 |
| Dyella japonica UNC79MFTsu3.2 | 0.41 | ABZR86_RS19990 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.25 | ABZR86_RS07660 | | exodeoxyribonuclease V subunit gamma | low | > 74 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_0255 | | RNA methyltransferase, RsmD family | 0.23 | Psest_0212 | | exodeoxyribonuclease V, gamma subunit | — | — |
| Pseudomonas sp. S08-1 | 0.40 | OH686_14220 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.23 | OH686_12080 | | exodeoxyribonuclease V, gamma subunit | low | > 80 |
| Pseudomonas aeruginosa PA14 | 0.40 | IKLFDK_23575 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.27 | IKLFDK_02685 | | exodeoxyribonuclease V subunit gamma | — | — |
| Rhodanobacter sp. FW510-T8 | 0.40 | OKGIIK_02580 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.16 | OKGIIK_09225 | | RecBCD enzyme subunit RecC | low | > 52 |
| Pseudomonas sp. RS175 | 0.40 | PFR28_04262 | | Ribosomal RNA small subunit methyltransferase D | 0.27 | PFR28_00006 | | RecBCD enzyme subunit RecC | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.39 | PfGW456L13_990 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.27 | PfGW456L13_5152 | | Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.39 | PFLU_RS28470 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.26 | PFLU_RS25595 | | exodeoxyribonuclease V subunit gamma | low | > 109 |
| Pseudomonas sp. DMC3 | 0.39 | GFF229 | | Ribosomal RNA small subunit methyltransferase D | 0.27 | GFF4912 | | RecBCD enzyme subunit RecC | low | > 89 |
| Pseudomonas fluorescens SBW25-INTG | 0.39 | PFLU_RS28470 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.26 | PFLU_RS25595 | | exodeoxyribonuclease V subunit gamma | low | > 109 |
| Pseudomonas simiae WCS417 | 0.39 | PS417_26825 | | 16S rRNA methyltransferase | 0.27 | PS417_23780 | | exodeoxyribonuclease V subunit gamma | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_4579 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.27 | Pf6N2E2_3461 | | Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.39 | AO356_13320 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.27 | AO356_07920 | | exodeoxyribonuclease V subunit gamma | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.38 | AO353_08265 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.27 | AO353_06050 | | exodeoxyribonuclease V subunit gamma | 0.27 | 65 |
| Pseudomonas fluorescens FW300-N1B4 | 0.37 | Pf1N1B4_2320 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.27 | Pf1N1B4_1236 | | Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) | — | — |
| Burkholderia phytofirmans PsJN | 0.36 | BPHYT_RS02815 | | methyltransferase | 0.17 | BPHYT_RS07970 | | exodeoxyribonuclease V subunit gamma | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.36 | H281DRAFT_01968 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.16 | H281DRAFT_05085 | | DNA helicase/exodeoxyribonuclease V, gamma subunit | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.35 | QEN71_RS01665 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.17 | QEN71_RS23195 | | exodeoxyribonuclease V subunit gamma | — | — |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS15125 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.17 | ABIE51_RS01020 | | exodeoxyribonuclease V subunit gamma | low | > 62 |
| Paraburkholderia graminis OAS925 | 0.34 | ABIE53_000701 | | 16S rRNA (guanine966-N2)-methyltransferase | 0.25 | ABIE53_000494 | | exodeoxyribonuclease V gamma subunit | low | > 113 |
| Castellaniella sp019104865 MT123 | 0.28 | ABCV34_RS10145 | | RsmD family RNA methyltransferase | 0.23 | ABCV34_RS02960 | | exodeoxyribonuclease V subunit gamma | low | > 48 |
| Mycobacterium tuberculosis H37Rv | 0.18 | Rv2966c | | Possible methyltransferase (methylase) | 0.13 | Rv0631c | | Probable exonuclease V (gamma chain) RecC (exodeoxyribonuclease V gamma chain)(exodeoxyribonuclease V polypeptide) | — | — |
Not shown: 34 genomes with orthologs for CSW01_00740 only; 1 genomes with orthologs for CSW01_11785 only