Conservation of cofitness between CSW01_03340 and CSW01_10255 in Vibrio cholerae E7946 ATCC 55056

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03340 ribosomal RNA large subunit methyltransferase E 1.0 CSW01_10255 cytochrome c-type biogenesis protein CcmH 0.46 11
Shewanella amazonensis SB2B 0.77 Sama_0953 rrmJ 23S rRNA methyltransferase J (RefSeq) 0.40 Sama_0250 cytochrome c-type biogenesis protein CcmH (RefSeq) low > 62
Shewanella sp. ANA-3 0.77 Shewana3_1022 rrmJ 23S rRNA methyltransferase J (RefSeq) 0.29 Shewana3_0236 cytochrome C biogenesis protein (RefSeq) — —
Shewanella loihica PV-4 0.77 Shew_2835 rrmJ 23S rRNA methyltransferase J (RefSeq) 0.38 Shew_0195 cytochrome C biogenesis protein (RefSeq) — —
Shewanella oneidensis MR-1 0.76 SO1196 rrmJ ribosomal RNA large subunit methyltransferase J (NCBI ptt file) 0.29 SO0268 ccmH cytochrome c-type biogenesis protein CcmH (NCBI ptt file) low > 76
Pantoea sp. MT58 0.72 IAI47_17070 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.49 IAI47_06100 cytochrome c-type biogenesis protein CcmH — —
Pantoea agglomerans CFBP13505 P0401 0.72 PagCFBP13505_RS09165 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.49 PagCFBP13505_RS00055 cytochrome c-type biogenesis protein CcmH — —
Klebsiella pneumoniae MKP103 0.71 KDGMDA_05965 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.48 KDGMDA_23835 cytochrome c-type biogenesis protein CcmH — —
Serratia liquefaciens MT49 0.71 IAI46_01890 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.50 IAI46_18075 cytochrome c-type biogenesis protein CcmH — —
Pectobacterium carotovorum WPP14 0.71 HER17_RS18320 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.37 HER17_RS09065 cytochrome c-type biogenesis protein CcmH — —
Rahnella sp. WP5 0.71 EX31_RS08585 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.47 EX31_RS19735 cytochrome c-type biogenesis protein CcmH — —
Erwinia amylovora T8 0.70 OLJFJH_07195 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.39 OLJFJH_11110 cytochrome c-type biogenesis protein CcmH — —
Kangiella aquimarina DSM 16071 0.62 B158DRAFT_0634 23S rRNA Um-2552 2'-O-methyltransferase (EC 2.1.1.166) 0.37 B158DRAFT_1330 Uncharacterized protein involved in biosynthesis of c-type cytochromes low > 40
Marinobacter adhaerens HP15 0.61 HP15_3615 ribosomal RNA large subunit methyltransferase J 0.35 HP15_2279 cytochrome C biogenesis protein CcmH — —
Pseudomonas aeruginosa MRSN321 0.60 DY961_RS09515 rlmE;go_function=rRNA 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.41 DY961_RS05500 ccmH;inference=COORDINATES cytochrome c maturation protein CcmH — —
Pseudomonas aeruginosa PUPa3 0.60 DQ20_RS52520 rlmE;go_function=rRNA 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.41 DQ20_RS47290 ccmH;inference=COORDINATES cytochrome c maturation protein CcmH — —
Pseudomonas aeruginosa PA14 0.60 IKLFDK_29835 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.41 IKLFDK_07050 Cytochrome c-type biogenesis protein CcmH — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_4188 23S rRNA Um-2552 2'-O-methyltransferase 0.40 Psyr_3386 Cytochrome C biogenesis protein — —
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_4188 23S rRNA Um-2552 2'-O-methyltransferase 0.40 Psyr_3386 Cytochrome C biogenesis protein — —
Pseudomonas simiae WCS417 0.59 PS417_24020 23S rRNA methyltransferase 0.38 PS417_08725 cytochrome C — —
Pseudomonas lactucae CFBP13502 0.59 GEMAOFIL_04954 Ribosomal RNA large subunit methyltransferase E 0.38 GEMAOFIL_01877 Cytochrome c-type biogenesis protein CcmH — —
Pseudomonas segetis P6 0.59 MPMX49_01191 Ribosomal RNA large subunit methyltransferase E 0.39 MPMX49_03105 Cytochrome c-type biogenesis protein CcmH — —
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS06565 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.31 ABZR86_RS06455 cytochrome c-type biogenesis protein — —
Pseudomonas sp. RS175 0.59 PFR28_00081 Ribosomal RNA large subunit methyltransferase E 0.39 PFR28_00872 Cytochrome c-type biogenesis protein CcmH — —
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_07460 23S rRNA methyltransferase 0.38 AO356_03625 cytochrome C — —
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_3360 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.39 Pf6N2E2_2553 Cytochrome c heme lyase subunit CcmL — —
Pseudomonas orientalis W4I3 0.59 QF045_RS26275 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.41 QF045_RS11440 cytochrome c-type biogenesis protein CcmH — —
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_05610 23S rRNA methyltransferase 0.40 AO353_18885 cytochrome C — —
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS25860 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.37 PFLU_RS08680 cytochrome c-type biogenesis protein CcmH — —
Pseudomonas fluorescens SBW25 0.58 PFLU_RS25860 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.37 PFLU_RS08680 cytochrome c-type biogenesis protein CcmH — —
Pseudomonas putida KT2440 0.58 PP_4719 Ribosomal RNA large subunit methyltransferase E 0.41 PP_5748 cytochrome c heme lyase subunit — —
Pseudomonas sp. BP01 0.58 JOY50_RS26785 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.41 JOY50_RS00470 cytochrome c-type biogenesis protein — —
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_5095 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.38 PfGW456L13_4309 Cytochrome c heme lyase subunit CcmL — —
Pseudomonas sp. S08-1 0.57 OH686_23800 23S rRNA (uridine(2552)-2'-O)-methyltransferase 0.40 OH686_02625 Cytochrome c heme lyase subunit CcmL — —
Pseudomonas sp. SVBP6 0.56 COO64_RS15220 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.42 COO64_RS25725 cytochrome c-type biogenesis protein — —
Rhodanobacter denitrificans MT42 0.56 LRK55_RS16405 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.35 LRK55_RS15805 cytochrome c-type biogenesis protein CcmH low > 63
Rhodanobacter denitrificans FW104-10B01 0.56 LRK54_RS16680 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.35 LRK54_RS16055 cytochrome c-type biogenesis protein CcmH — —
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_1168 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.38 Pf1N1B4_3646 Cytochrome c heme lyase subunit CcmL — —
Pseudomonas sp. DMC3 0.56 GFF4981 Ribosomal RNA large subunit methyltransferase E 0.42 GFF2492 Cytochrome c-type biogenesis protein CcmH — —
Pseudomonas stutzeri RCH2 0.56 Psest_1346 23S rRNA methylase 0.41 Psest_1761 Uncharacterized protein involved in biosynthesis of c-type cytochromes — —
Dechlorosoma suillum PS 0.54 Dsui_3060 23S rRNA methylase 0.37 Dsui_1174 uncharacterized protein involved in biosynthesis of c-type cytochromes — —
Lysobacter sp. OAE881 0.52 ABIE51_RS06520 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.33 ABIE51_RS08690 cytochrome c-type biogenesis protein — —
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.3125.1 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.32 Xcc-8004.3192.1 Cytochrome c heme lyase subunit CcmL — —
Azospirillum sp. SherDot2 0.43 MPMX19_01691 Ribosomal RNA large subunit methyltransferase E 0.31 MPMX19_02535 Cytochrome c-type biogenesis protein CcmH — —
Azospirillum brasilense Sp245 0.42 AZOBR_RS16115 23S rRNA methyltransferase 0.30 AZOBR_RS00750 cytochrome C biogenesis protein — —
Xanthobacter sp. DMC5 0.41 GFF4716 Ribosomal RNA large subunit methyltransferase E 0.27 GFF1780 hypothetical protein — —
Rhizobium sp. OAE497 0.36 ABIE40_RS03440 RlmE family RNA methyltransferase 0.32 ABIE40_RS05690 cytochrome c-type biogenesis protein — —
Bosea sp. OAE506 0.35 ABIE41_RS15205 RlmE family RNA methyltransferase 0.23 ABIE41_RS21450 cytochrome c-type biogenesis protein — —
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS03015 RlmE family RNA methyltransferase 0.21 A4249_RS10820 cytochrome c-type biogenesis protein CcmH — —
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_01687 FtsJ-family 23S rRNA methylase 0.26 CCNA_02847 cytochrome c-type biogenesis protein ccmH — —
Caulobacter crescentus NA1000 0.34 CCNA_01687 FtsJ-family 23S rRNA methylase 0.26 CCNA_02847 cytochrome c-type biogenesis protein ccmH — —
Phaeobacter inhibens DSM 17395 0.33 PGA1_c16080 ribosomal RNA large subunit methyltransferase J 0.20 PGA1_c17000 cytochrome c-type biogenesis protein Ccl — —
Dinoroseobacter shibae DFL-12 0.31 Dshi_1672 ribosomal RNA methyltransferase RrmJ/FtsJ (RefSeq) 0.29 Dshi_3409 cytochrome C biogenesis protein (RefSeq) — —

Not shown: 52 genomes with orthologs for CSW01_03340 only; 1 genomes with orthologs for CSW01_10255 only