| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_06820 | | ribosomal RNA large subunit methyltransferase I | 1.0 | CSW01_05565 | | ABC transporter ATP-binding protein | 0.43 | 18 |
| Enterobacter asburiae PDN3 | 0.66 | EX28DRAFT_1976 | | Predicted SAM-dependent methyltransferases | 0.75 | EX28DRAFT_0872 | | oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain | low | > 76 |
| Enterobacter sp. TBS_079 | 0.66 | MPMX20_01617 | | Ribosomal RNA large subunit methyltransferase I | 0.75 | MPMX20_02583 | | Vitamin B12 import ATP-binding protein BtuD | low | > 85 |
| Klebsiella michiganensis M5al | 0.64 | BWI76_RS10045 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase | 0.75 | BWI76_RS17220 | | oligopeptide ABC transporter ATP-binding protein OppF | low | > 92 |
| Erwinia amylovora T8 | 0.64 | OLJFJH_15885 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.73 | OLJFJH_13420 | | murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF | low | > 58 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.64 | GFF3258 | | LSU m5C1962 methyltransferase RlmI | 0.75 | GFF2742 | | Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.64 | LU632_RS10090 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.73 | LU632_RS12860 | oppF | murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF | low | > 74 |
| Escherichia coli ECRC62 | 0.64 | BNILDI_19905 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.75 | BNILDI_18545 | oppF | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | low | > 75 |
| Escherichia coli ECRC99 | 0.64 | KEDOAH_22550 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.75 | KEDOAH_25645 | oppF | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | — | — |
| Escherichia coli BW25113 | 0.64 | b0967 | yccW | predicted methyltransferase (RefSeq) | 0.75 | b1247 | oppF | oligopeptide transporter subunit (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.64 | ECD_00971 | | 23S rRNA m(5)C1962 methyltransferase, SAM-dependent | 0.75 | ECD_01221 | | oligopeptide ABC transporter ATPase | low | > 61 |
| Escherichia coli ECRC102 | 0.64 | NIAGMN_02905 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.75 | NIAGMN_27585 | oppF | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | — | — |
| Pantoea sp. MT58 | 0.64 | IAI47_12595 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.75 | IAI47_09090 | | murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF | low | > 76 |
| Escherichia coli ECRC100 | 0.64 | OKFHMN_05185 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.75 | OKFHMN_28650 | oppF | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | low | > 80 |
| Escherichia coli ECRC98 | 0.64 | JDDGAC_08795 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.75 | JDDGAC_05925 | oppF | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | low | > 86 |
| Escherichia coli ECRC101 | 0.64 | MCAODC_24575 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.75 | MCAODC_21610 | oppF | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | low | > 87 |
| Escherichia coli Nissle 1917 | 0.64 | ECOLIN_RS05085 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.75 | ECOLIN_RS07530 | | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | — | — |
| Escherichia coli ECOR27 | 0.64 | NOLOHH_21740 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.75 | NOLOHH_20400 | oppF | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | low | > 75 |
| Serratia liquefaciens MT49 | 0.64 | IAI46_08925 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.75 | IAI46_14185 | | murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.64 | OHPLBJKB_02699 | | Ribosomal RNA large subunit methyltransferase I | 0.75 | OHPLBJKB_02436 | | Vitamin B12 import ATP-binding protein BtuD | low | > 73 |
| Escherichia fergusonii Becca | 0.63 | EFB2_03104 | | Ribosomal RNA large subunit methyltransferase I | 0.75 | EFB2_02678 | | Vitamin B12 import ATP-binding protein BtuD | low | > 86 |
| Escherichia coli ECOR38 | 0.63 | HEPCGN_23335 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.75 | HEPCGN_25115 | oppF | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | low | > 87 |
| Rahnella sp. WP5 | 0.63 | EX31_RS17990 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.74 | EX31_RS10045 | | ABC transporter ATP-binding protein | low | > 89 |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS00350 | | class I SAM-dependent rRNA methyltransferase | 0.56 | QEN71_RS18340 | | ATP-binding cassette domain-containing protein | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.48 | H281DRAFT_02203 | | SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase | 0.55 | H281DRAFT_03125 | | oligopeptide transport system ATP-binding protein | — | — |
| Paraburkholderia graminis OAS925 | 0.47 | ABIE53_000425 | | 23S rRNA (cytosine1962-C5)-methyltransferase | 0.55 | ABIE53_004173 | | oligopeptide transport system ATP-binding protein | — | — |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS01650 | | 23S rRNA methyltransferase | 0.56 | BPHYT_RS22030 | | peptide ABC transporter ATP-binding protein | low | > 109 |
| Ralstonia sp. UNC404CL21Col | 0.47 | ABZR87_RS05070 | | class I SAM-dependent rRNA methyltransferase | 0.42 | ABZR87_RS14295 | | oligopeptide/dipeptide ABC transporter ATP-binding protein | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS01670 | | 23S rRNA methyltransferase | 0.50 | RR42_RS35215 | | peptide ABC transporter ATP-binding protein | low | > 128 |
| Variovorax sp. SCN45 | 0.40 | GFF4489 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) | 0.47 | GFF6111 | | Oligopeptide ABC transporter, ATP-binding protein OppF (TC 3.A.1.5.1) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_2000 | | LSU m5C1962 methyltransferase RlmI | 0.47 | Ac3H11_694 | | Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) | low | > 79 |
| Variovorax sp. OAS795 | 0.37 | ABID97_RS06155 | | class I SAM-dependent methyltransferase | 0.46 | ABID97_RS25745 | | dipeptide ABC transporter ATP-binding protein | low | > 91 |
| Pseudomonas fluorescens GW456-L13 | 0.29 | PfGW456L13_977 | | LSU m5C1962 methyltransferase RlmI | 0.45 | PfGW456L13_5058 | | Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.28 | AO353_08330 | | SAM-dependent methyltransferase | 0.46 | AO353_05410 | | peptide ABC transporter ATP-binding protein | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.28 | Psyr_4764 | | SAM-dependent methyltransferase | 0.45 | Psyr_4242 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.28 | Psyr_4764 | | SAM-dependent methyltransferase | 0.45 | Psyr_4242 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal | low | > 86 |
| Pseudomonas sp. RS175 | 0.28 | PFR28_04274 | | Ribosomal RNA large subunit methyltransferase I | 0.43 | PFR28_00124 | | Glutathione import ATP-binding protein GsiA | low | > 88 |
| Pseudomonas sp. SVBP6 | 0.28 | COO64_RS12825 | | class I SAM-dependent rRNA methyltransferase | 0.42 | COO64_RS04085 | | peptide ABC transporter ATP-binding protein | low | > 93 |
| Pseudomonas fluorescens FW300-N2E2 | 0.28 | Pf6N2E2_4566 | | LSU m5C1962 methyltransferase RlmI | 0.46 | Pf6N2E2_3314 | | Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) | low | > 103 |
| Pseudomonas putida KT2440 | 0.28 | PP_5127 | | ribosomal RNA large subunit methyltransferase I | 0.45 | PP_0878 | | dipeptide ABC transporter, binding subunit | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.28 | AO356_13260 | | SAM-dependent methyltransferase | 0.46 | AO356_07275 | | peptide ABC transporter ATP-binding protein | low | > 104 |
| Pseudomonas simiae WCS417 | 0.28 | PS417_26880 | | SAM-dependent methyltransferase | 0.43 | PS417_04045 | | peptide ABC transporter ATP-binding protein | — | — |
| Pseudomonas sp. BP01 | 0.28 | JOY50_RS20750 | | class I SAM-dependent rRNA methyltransferase | 0.44 | JOY50_RS10945 | | peptide ABC transporter ATP-binding protein | low | > 84 |
| Pseudomonas fluorescens FW300-N1B4 | 0.28 | Pf1N1B4_2307 | | LSU m5C1962 methyltransferase RlmI | 0.46 | Pf1N1B4_1127 | | Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.28 | PFLU_RS28525 | | class I SAM-dependent rRNA methyltransferase | 0.42 | PFLU_RS04085 | | ABC transporter ATP-binding protein | 0.10 | 61 |
| Pseudomonas fluorescens SBW25 | 0.28 | PFLU_RS28525 | | class I SAM-dependent rRNA methyltransferase | 0.42 | PFLU_RS04085 | | ABC transporter ATP-binding protein | low | > 109 |
| Pseudomonas aeruginosa PA14 | 0.28 | IKLFDK_23665 | | RlmI/RlmK family 23S rRNA methyltransferase | 0.44 | IKLFDK_01550 | | Di/tripeptide transport ATP-binding protein DppF | low | > 101 |
| Pseudomonas sp. S08-1 | 0.28 | OH686_14110 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase | 0.43 | OH686_08720 | | Dipeptide ABC transporter, ATP-binding protein DppF | low | > 80 |
| Pseudomonas sp. DMC3 | 0.28 | GFF242 | | Ribosomal RNA large subunit methyltransferase I | 0.43 | GFF5019 | | putative D,D-dipeptide transport ATP-binding protein DdpF | low | > 89 |
| Azospirillum brasilense Sp245 | 0.27 | AZOBR_RS01190 | | SAM-dependent methyltransferase | 0.46 | AZOBR_RS21780 | | peptide ABC transporter ATP-binding protein | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.25 | DvMF_1714 | | protein of unknown function Met10 (RefSeq) | 0.43 | DvMF_1825 | | oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq) | low | > 51 |
| Fusobacterium nucleatum SB010 | 0.25 | HUW76_04950 | | class I SAM-dependent rRNA methyltransferase | 0.48 | HUW76_03535 | | ATP-binding cassette domain-containing protein | low | > 35 |
| Azospirillum sp. SherDot2 | 0.25 | MPMX19_00203 | | Ribosomal RNA large subunit methyltransferase I | 0.47 | MPMX19_04415 | | Vitamin B12 import ATP-binding protein BtuD | low | > 112 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.24 | DVU0495 | | conserved hypothetical protein (TIGR) | 0.43 | DVU0165 | oppF | oligopeptide/dipeptide ABC transporter, ATP-binding protein (TIGR) | low | > 55 |
| Marinobacter adhaerens HP15 | 0.24 | HP15_460 | | SAM-dependent methyltransferase | 0.41 | HP15_204 | | oligopeptide/dipeptide ABC transporter, ATPase subunit | low | > 73 |
| Phaeobacter inhibens DSM 17395 | 0.22 | PGA1_c19990 | | ribosomal RNA large subunit methyltransferase I | 0.42 | PGA1_262p01000 | | dipeptide transport ATP-binding protein DppF | low | > 62 |
| Rhodospirillum rubrum S1H | 0.22 | Rru_A3333 | | hypothetical protein (NCBI) | 0.60 | Rru_A0588 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI) | low | > 58 |
| Dinoroseobacter shibae DFL-12 | 0.20 | Dshi_1771 | | hypothetical protein (RefSeq) | 0.40 | Dshi_3795 | | oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq) | low | > 64 |
Not shown: 30 genomes with orthologs for CSW01_06820 only; 12 genomes with orthologs for CSW01_05565 only