Conservation of cofitness between CSW01_03065 and CSW01_04995 in Vibrio cholerae E7946 ATCC 55056

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03065 ClpXP protease specificity-enhancing factor 1.0 CSW01_04995 co-chaperone YbbN 0.45 15
Klebsiella pneumoniae MKP103 0.58 KDGMDA_06160 ClpXP protease specificity-enhancing factor 0.36 KDGMDA_14975 co-chaperone YbbN low > 95
Erwinia tracheiphila HP pepo 2.2 0.58 IJEDHG_13695 sspB ClpXP protease specificity-enhancing factor 0.38 IJEDHG_01050 trxA co-chaperone YbbN low > 61
Escherichia coli ECRC102 0.58 NIAGMN_15595 sspB ClpXP protease specificity-enhancing factor 0.39 NIAGMN_06035 cnoX chaperedoxin low > 80
Escherichia coli ECOR27 0.58 NOLOHH_09635 sspB ClpXP protease specificity-enhancing factor 0.39 NOLOHH_00975 cnoX chaperedoxin low > 76
Escherichia coli ECRC62 0.58 BNILDI_01900 sspB ClpXP protease specificity-enhancing factor 0.38 BNILDI_22395 cnoX chaperedoxin low > 75
Escherichia coli BW25113 0.58 b3228 sspB ClpXP protease specificity-enhancing factor (NCBI) 0.39 b0492 ybbN putative thioredoxin-like protein (VIMSS) low > 76
Escherichia coli ECRC100 0.58 OKFHMN_17835 sspB ClpXP protease specificity-enhancing factor 0.39 OKFHMN_07985 cnoX chaperedoxin low > 79
Dickeya dianthicola 67-19 0.58 HGI48_RS01550 ClpXP protease specificity-enhancing factor 0.38 HGI48_RS06000 co-chaperone YbbN low > 71
Escherichia coli BL21 0.58 ECD_03088 ClpXP protease specificity enhancing factor 0.39 ECD_00443 DnaK co-chaperone, thioredoxin-like protein low > 61
Escherichia coli ECRC101 0.58 MCAODC_08355 sspB ClpXP protease specificity-enhancing factor 0.39 MCAODC_27200 cnoX chaperedoxin low > 87
Erwinia tracheiphila SCR3 0.58 LU632_RS21325 sspB ClpXP protease specificity-enhancing factor 0.38 LU632_RS15275 co-chaperone YbbN low > 73
Escherichia coli ECRC99 0.58 KEDOAH_10315 sspB ClpXP protease specificity-enhancing factor 0.39 KEDOAH_19985 cnoX chaperedoxin — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_00476 Stringent starvation protein B 0.39 OHPLBJKB_03182 putative protein YbbN low > 74
Escherichia coli ECOR38 0.58 HEPCGN_16710 sspB ClpXP protease specificity-enhancing factor 0.39 HEPCGN_06615 cnoX chaperedoxin low > 88
Escherichia coli Nissle 1917 0.58 ECOLIN_RS18515 ClpXP protease specificity-enhancing factor 0.38 ECOLIN_RS02910 chaperedoxin — —
Escherichia coli ECRC98 0.58 JDDGAC_21460 sspB ClpXP protease specificity-enhancing factor 0.39 JDDGAC_11630 cnoX chaperedoxin low > 87
Escherichia fergusonii Becca 0.58 EFB2_00602 Stringent starvation protein B 0.39 EFB2_03563 Chaperedoxin low > 86
Dickeya dianthicola ME23 0.58 DZA65_RS01620 ClpXP protease specificity-enhancing factor 0.39 DZA65_RS06345 co-chaperone YbbN low > 75
Rahnella sp. WP5 0.58 EX31_RS12505 ClpXP protease specificity-enhancing factor 0.36 EX31_RS22595 co-chaperone YbbN low > 89
Serratia liquefaciens MT49 0.57 IAI46_22360 ClpXP protease specificity-enhancing factor 0.39 IAI46_05335 co-chaperone YbbN low > 87
Enterobacter sp. TBS_079 0.57 MPMX20_04132 Stringent starvation protein B 0.36 MPMX20_01090 Chaperedoxin low > 85
Klebsiella michiganensis M5al 0.57 BWI76_RS25330 stringent starvation protein B 0.38 BWI76_RS06935 co-chaperone YbbN — —
Enterobacter asburiae PDN3 0.57 EX28DRAFT_3277 Stringent starvation protein B 0.36 EX28DRAFT_2467 Thioredoxin domain-containing protein low > 76
Dickeya dadantii 3937 0.57 DDA3937_RS01650 ClpXP protease specificity-enhancing factor 0.38 DDA3937_RS05950 co-chaperone YbbN low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF2967 ClpXP protease specificity-enhancing factor / Stringent starvation protein B 0.38 GFF4410 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 78
Pantoea sp. MT58 0.56 IAI47_17230 ClpXP protease specificity-enhancing factor 0.38 IAI47_14380 co-chaperone YbbN low > 76
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS09395 ClpXP protease specificity-enhancing factor 0.37 PagCFBP13505_RS10820 co-chaperone YbbN low > 74
Pectobacterium carotovorum WPP14 0.56 HER17_RS19930 ClpXP protease specificity-enhancing factor 0.42 HER17_RS15510 co-chaperone YbbN low > 75
Erwinia amylovora T8 0.54 OLJFJH_07020 ClpXP protease specificity-enhancing factor 0.35 OLJFJH_17685 co-chaperone YbbN low > 58
Shewanella amazonensis SB2B 0.50 Sama_3017 ClpXP protease specificity-enhancing factor (RefSeq) 0.28 Sama_1314 putative thioredoxin-like protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.50 Shewana3_0605 ClpXP protease specificity-enhancing factor (RefSeq) 0.32 Shewana3_2442 thioredoxin domain-containing protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.48 SO0612 sspB stringent starvation protein b (NCBI ptt file) 0.32 SO2017 hypothetical thioredoxin-like protein (NCBI ptt file) — —
Pseudomonas sp. S08-1 0.44 OH686_08370 Stringent starvation protein B 0.23 OH686_15675 thioredoxin low > 80
Pseudomonas orientalis W4I3 0.42 QF045_RS07175 ClpXP protease specificity-enhancing factor 0.24 QF045_RS27250 thioredoxin low > 93
Alteromonas macleodii MIT1002 0.42 MIT1002_00818 Stringent starvation protein B 0.31 MIT1002_00529 Thioredoxin low > 70
Marinobacter adhaerens HP15 0.42 HP15_549 stringent starvation protein B 0.24 HP15_3051 thioredoxin domain-containing protein low > 73
Pseudomonas stutzeri RCH2 0.42 Psest_3275 Stringent starvation protein B 0.24 Psest_3559 thioredoxin low > 67
Pseudomonas segetis P6 0.41 ACVTMO_RS18950 ClpXP protease specificity-enhancing factor 0.23 ACVTMO_RS04885 trxA thioredoxin low > 75
Pseudomonas putida KT2440 0.40 PP_1321 ClpXP protease specificity-enhancing factor 0.24 PP_0510 Thioredoxin low > 96
Pseudomonas lactucae CFBP13502 0.40 GEMAOFIL_01040 Stringent starvation protein B 0.24 GEMAOFIL_05162 Chaperedoxin low > 96
Pseudomonas sp. RS175 0.40 PFR28_03602 Stringent starvation protein B 0.24 PFR28_03953 Chaperedoxin low > 88
Pseudomonas simiae WCS417 0.40 PS417_04175 peptidase 0.24 PS417_25285 thioredoxin low > 88
Pseudomonas aeruginosa MRSN321 0.39 DY961_RS24340 ClpXP protease specificity-enhancing factor 0.22 DY961_RS27770 trxA;go_component=cytoplasm|0005737||IEA;go_function=disulfide thioredoxin low > 100
Pseudomonas aeruginosa PUPa3 0.39 DQ20_RS56800 ClpXP protease specificity-enhancing factor 0.22 DQ20_RS47880 trxA;go_component=cytoplasm|0005737||IEA;go_function=disulfide thioredoxin low > 101
Pseudomonas aeruginosa PA14 0.39 IKLFDK_01955 ClpXP protease specificity-enhancing factor 0.22 IKLFDK_20930 thioredoxin low > 98
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS09860 ClpXP protease specificity-enhancing factor 0.18 ABZR86_RS09135 thioredoxin — —
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_5341 Stringent starvation protein B 0.24 Pf6N2E2_4915 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 103
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS04215 ClpXP protease specificity-enhancing factor 0.25 PFLU_RS26920 thioredoxin low > 109
Pseudomonas sp. BP01 0.39 JOY50_RS15195 ClpXP protease specificity-enhancing factor 0.24 JOY50_RS20145 trxA thioredoxin low > 84
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_17085 peptidase 0.24 AO356_14910 thioredoxin low > 104
Pseudomonas sp. SVBP6 0.39 COO64_RS11815 ClpXP protease specificity-enhancing factor 0.24 COO64_RS15910 trxA thioredoxin low > 93
Pseudomonas fluorescens SBW25 0.39 PFLU_RS04215 ClpXP protease specificity-enhancing factor 0.25 PFLU_RS26920 thioredoxin low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4117 Stringent starvation protein B 0.25 Psyr_4466 Thioredoxin low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4117 Stringent starvation protein B 0.25 Psyr_4466 Thioredoxin low > 86
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS13785 ClpXP protease specificity-enhancing factor 0.15 LRK54_RS02805 thioredoxin low > 59
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_15265 peptidase 0.24 AO353_06735 thioredoxin low > 101
Rhodanobacter denitrificans MT42 0.38 LRK55_RS13500 ClpXP protease specificity-enhancing factor 0.14 LRK55_RS02560 thioredoxin low > 63
Pseudomonas sp. DMC3 0.38 GFF4433 Stringent starvation protein B 0.23 GFF3823 Chaperedoxin low > 89
Rhodanobacter sp000427505 FW510-R12 0.37 LRK53_RS14815 ClpXP protease specificity-enhancing factor 0.15 LRK53_RS07145 thioredoxin low > 59
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_1638 Stringent starvation protein B 0.23 PfGW456L13_1308 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 87
Pseudomonas fluorescens FW300-N1B4 0.37 Pf1N1B4_958 Stringent starvation protein B 0.23 Pf1N1B4_2645 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 87
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.2232.1 Stringent starvation protein B 0.15 Xcc-8004.1867.1 FIG000875: Thioredoxin domain-containing protein EC-YbbN low > 74
Ralstonia solanacearum UW163 0.30 UW163_RS06905 ClpXP protease specificity-enhancing factor 0.16 UW163_RS00445 thioredoxin — —
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS06710 ClpXP protease specificity-enhancing factor 0.16 RALBFv3_RS13120 thioredoxin low > 76
Ralstonia solanacearum GMI1000 0.29 RS_RS14655 ClpXP protease specificity-enhancing factor 0.16 RS_RS03915 thioredoxin low > 80
Ralstonia sp. UNC404CL21Col 0.28 ABZR87_RS02365 ClpXP protease specificity-enhancing factor 0.17 ABZR87_RS09195 thioredoxin low > 80
Ralstonia solanacearum PSI07 0.28 RPSI07_RS10525 ClpXP protease specificity-enhancing factor 0.16 RPSI07_RS20095 thioredoxin low > 81

Not shown: 8 genomes with orthologs for CSW01_03065 only; 15 genomes with orthologs for CSW01_04995 only