Conservation of cofitness between CSW01_03285 and CSW01_04640 in Vibrio cholerae E7946 ATCC 55056

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03285 AI-2E family transporter 1.0 CSW01_04640 methionine ABC transporter permease 0.44 9
Pseudomonas aeruginosa MRSN321 0.25 DY961_RS03960 AI-2E family transporter 0.40 DY961_RS18150 methionine ABC transporter permease low > 100
Pseudomonas aeruginosa PUPa3 0.25 DQ20_RS34990 AI-2E family transporter 0.40 DQ20_RS59385 methionine ABC transporter permease low > 101
Pseudomonas aeruginosa PA14 0.25 IKLFDK_13310 AI-2E family transporter 0.40 IKLFDK_11515 ABC transporter permease low > 98
Pantoea sp. MT58 0.25 IAI47_14150 AI-2E family transporter 0.47 IAI47_20550 ABC transporter permease low > 76
Pseudomonas stutzeri RCH2 0.24 Psest_2012 Predicted permease 0.32 Psest_4315 ABC-type metal ion transport system, permease component low > 67
Klebsiella pneumoniae MKP103 0.24 KDGMDA_26805 AI-2E family transporter 0.47 KDGMDA_13610 D-methionine transport system permease protein MetI low > 95
Pantoea agglomerans CFBP13505 P0401 0.24 PagCFBP13505_RS03120 AI-2E family transporter 0.47 PagCFBP13505_RS13615 methionine ABC transporter permease MetI low > 74
Klebsiella michiganensis M5al 0.24 BWI76_RS19855 AI-2E family transporter 0.46 BWI76_RS05360 methionine ABC transporter permease low > 92
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS15425 membrane protein 0.51 RR42_RS04560 methionine ABC transporter permease low > 128
Enterobacter sp. TBS_079 0.23 MPMX20_00952 Putative transport protein YdiK 0.47 MPMX20_00882 D-methionine transport system permease protein MetI low > 85
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2609 Predicted permease 0.47 EX28DRAFT_3786 ABC-type metal ion transport system, permease component low > 76
Rahnella sp. WP5 0.22 EX31_RS10525 AI-2E family transporter 0.46 EX31_RS12885 methionine ABC transporter permease MetI low > 89
Pseudomonas sp. S08-1 0.22 OH686_00090 Uncharacterized UPF0118 membrane protein 0.42 OH686_23815 Methionine ABC transporter permease protein low > 80
Pseudomonas fluorescens FW300-N1B4 0.22 Pf1N1B4_3926 membrane protein, putative 0.39 Pf1N1B4_1703 Methionine ABC transporter permease protein low > 87
Variovorax sp. OAS795 0.22 ABID97_RS22290 AI-2E family transporter 0.33 ABID97_RS21740 methionine ABC transporter permease low > 91
Marinobacter adhaerens HP15 0.22 HP15_593 protein belonging to uncharacterized protein family UPF0118 0.39 HP15_3904 binding-protein-dependent transport systems inner membrane component low > 73
Pseudomonas lactucae CFBP13502 0.22 GEMAOFIL_02170 Putative transport protein YdiK 0.44 GEMAOFIL_02832 D-methionine transport system permease protein MetI low > 96
Pseudomonas sp. BP01 0.22 JOY50_RS12685 AI-2E family transporter 0.41 JOY50_RS18485 methionine ABC transporter permease low > 84
Rhodopseudomonas palustris CGA009 0.22 TX73_002840 AI-2E family transporter 0.45 TX73_007325 ABC transporter permease low > 86
Pseudomonas fluorescens FW300-N2C3 0.22 AO356_21305 hypothetical protein 0.43 AO356_10280 ABC transporter permease low > 104
Pseudomonas orientalis W4I3 0.22 QF045_RS12380 AI-2E family transporter 0.40 QF045_RS04195 methionine ABC transporter permease low > 93
Pseudomonas putida KT2440 0.21 PP_2207 conserved membrane protein of unknown function 0.41 PP_0219 L,D-methionine D-methionine ABC transporter - permease subunit low > 96
Erwinia amylovora T8 0.21 OLJFJH_12970 AI-2E family transporter 0.45 OLJFJH_00485 D-methionine transport system permease protein MetI low > 58
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_2486 membrane protein, putative 0.43 PfGW456L13_454 Methionine ABC transporter permease protein low > 87
Sinorhizobium meliloti 1021 0.21 SM_b21335 hypothetical protein 0.43 SMc03158 ABC transporter permease low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.21 GFF1907 membrane protein, putative 0.49 GFF5038 Methionine ABC transporter permease protein — —
Pseudomonas simiae WCS417 0.21 PS417_10400 membrane protein 0.40 PS417_01060 ABC transporter permease low > 88
Pseudomonas fluorescens SBW25 0.21 PFLU_RS10475 AI-2E family transporter 0.42 PFLU_RS01170 ABC transporter permease low > 109
Acidovorax sp. GW101-3H11 0.21 Ac3H11_2468 membrane protein, putative 0.48 Ac3H11_632 Methionine ABC transporter permease protein low > 79
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_3210 Protein of unknown function UPF0118 0.39 Psyr_0349 Binding-protein-dependent transport systems inner membrane component low > 86
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS10475 AI-2E family transporter 0.42 PFLU_RS01170 ABC transporter permease low > 109
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_46 membrane protein, putative 0.43 Pf6N2E2_3928 Methionine ABC transporter permease protein low > 103
Pseudomonas sp. SVBP6 0.21 COO64_RS24345 AI-2E family transporter 0.43 COO64_RS00840 methionine ABC transporter permease low > 93
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_3210 Protein of unknown function UPF0118 0.39 Psyr_0349 Binding-protein-dependent transport systems inner membrane component low > 86
Pseudomonas sp. RS175 0.21 PFR28_02842 Putative transport protein YdiK 0.43 PFR28_04846 D-methionine transport system permease protein MetI low > 88
Serratia liquefaciens MT49 0.21 IAI46_10470 AI-2E family transporter 0.45 IAI46_20080 methionine ABC transporter permease MetI low > 87
Pseudomonas fluorescens FW300-N2E3 0.21 AO353_19805 hypothetical protein 0.43 AO353_11630 ABC transporter permease low > 101
Pseudomonas sp. DMC3 0.20 GFF1423 Putative transport protein YdiK 0.43 GFF4207 D-methionine transport system permease protein MetI low > 89
Ralstonia sp. UNC404CL21Col 0.20 ABZR87_RS08310 AI-2E family transporter 0.51 ABZR87_RS09535 methionine ABC transporter permease low > 80
Variovorax sp. SCN45 0.20 GFF1804 Uncharacterized UPF0118 membrane protein 0.33 GFF3113 Methionine ABC transporter permease protein low > 127
Castellaniella sp019104865 MT123 0.20 ABCV34_RS06025 AI-2E family transporter 0.32 ABCV34_RS09540 methionine ABC transporter permease low > 48
Paraburkholderia sabiae LMG 24235 0.19 QEN71_RS09300 AI-2E family transporter 0.53 QEN71_RS04165 methionine ABC transporter permease low > 153
Dickeya dianthicola ME23 0.17 DZA65_RS13330 AI-2E family transporter YdiK 0.46 DZA65_RS17995 methionine ABC transporter permease MetI low > 75
Dickeya dadantii 3937 0.17 DDA3937_RS12800 AI-2E family transporter YdiK 0.46 DDA3937_RS16850 methionine ABC transporter permease MetI low > 74
Escherichia fergusonii Becca 0.17 EFB2_02304 Putative transport protein YdiK 0.45 EFB2_03845 D-methionine transport system permease protein MetI 0.26 67
Escherichia coli Nissle 1917 0.17 ECOLIN_RS09435 AI-2E family transporter YdiK 0.45 ECOLIN_RS01090 methionine ABC transporter permease MetI — —
Escherichia coli ECOR38 0.17 HEPCGN_05610 ydiK AI-2E family transporter YdiK 0.45 HEPCGN_07995 metI D-methionine transport system permease protein MetI low > 88
Escherichia coli ECRC101 0.17 MCAODC_18185 ydiK AI-2E family transporter YdiK 0.45 MCAODC_00570 metI D-methionine transport system permease protein MetI low > 87
Escherichia coli ECRC62 0.17 BNILDI_16535 ydiK AI-2E family transporter YdiK 0.45 BNILDI_09270 metI D-methionine transport system permease protein MetI low > 75
Escherichia coli ECRC102 0.17 NIAGMN_00840 ydiK AI-2E family transporter YdiK 0.45 NIAGMN_07905 metI D-methionine transport system permease protein MetI low > 80
Escherichia coli ECRC98 0.17 JDDGAC_01800 ydiK AI-2E family transporter YdiK 0.45 JDDGAC_13650 metI D-methionine transport system permease protein MetI low > 87
Escherichia coli ECOR27 0.17 NOLOHH_17745 ydiK AI-2E family transporter YdiK 0.45 NOLOHH_02400 metI D-methionine transport system permease protein MetI low > 76
Escherichia coli BL21 0.17 ECD_01657 UPF0118 family inner membrane protein 0.45 ECD_00197 DL-methionine transporter subunit low > 61
Escherichia coli BW25113 0.17 b1688 ydiK predicted inner membrane protein (NCBI) 0.45 b0198 metI DL-methionine transporter subunit (NCBI) 0.16 26
Escherichia coli ECRC100 0.17 OKFHMN_27225 ydiK AI-2E family transporter YdiK 0.45 OKFHMN_10055 metI D-methionine transport system permease protein MetI low > 79
Escherichia coli ECRC99 0.17 KEDOAH_00885 ydiK AI-2E family transporter YdiK 0.45 KEDOAH_18100 metI D-methionine transport system permease protein MetI — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.17 OHPLBJKB_02036 Putative transport protein YdiK 0.45 OHPLBJKB_03463 D-methionine transport system permease protein MetI low > 74
Dickeya dianthicola 67-19 0.16 HGI48_RS12865 AI-2E family transporter YdiK 0.46 HGI48_RS16920 methionine ABC transporter permease MetI low > 71
Dechlorosoma suillum PS 0.16 Dsui_0423 putative permease 0.34 Dsui_2067 ABC-type metal ion transport system, permease component low > 51
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.15 GFF3553 Putative membrane protein 0.47 GFF22 Methionine ABC transporter permease protein low > 78
Erwinia tracheiphila HP pepo 2.2 0.15 IJEDHG_25320 ydiK AI-2E family transporter YdiK 0.42 IJEDHG_15320 DL-methionine transporter permease subunit low > 61
Erwinia tracheiphila SCR3 0.15 LU632_RS11035 ydiK AI-2E family transporter YdiK 0.42 LU632_RS19825 methionine ABC transporter permease MetI low > 73
Acinetobacter baumannii LAC-4 0.14 RR41_RS01810 AI-2E family transporter 0.44 RR41_RS11615 ABC transporter permease low > 55
Paraburkholderia graminis OAS925 0.13 ABIE53_001629 putative PurR-regulated permease PerM 0.47 ABIE53_003138 D-methionine transport system permease protein low > 113
Burkholderia phytofirmans PsJN 0.13 BPHYT_RS06810 membrane protein 0.51 BPHYT_RS14815 methionine ABC transporter permease low > 109
Acinetobacter radioresistens SK82 0.12 MPMX26_02768 Putative transport protein YdiK 0.47 MPMX26_01860 Methionine import system permease protein MetP low > 36
Pseudomonas segetis P6 0.12 ACVTMO_RS13280 AI-2E family transporter 0.33 ACVTMO_RS01620 methionine ABC transporter permease low > 75
Paraburkholderia bryophila 376MFSha3.1 0.12 H281DRAFT_04605 Predicted PurR-regulated permease PerM 0.47 H281DRAFT_03905 D-methionine transport system permease protein low > 103
Rhizobium sp. OAE497 0.11 ABIE40_RS09660 AI-2E family transporter 0.43 ABIE40_RS23110 methionine ABC transporter permease low > 107
Xanthobacter sp. DMC5 0.08 GFF712 Putative transport protein YdiK 0.49 GFF2936 D-methionine transport system permease protein MetI — —

Not shown: 6 genomes with orthologs for CSW01_03285 only; 21 genomes with orthologs for CSW01_04640 only