Conservation of cofitness between CSW01_17220 and CSW01_04635 in Vibrio cholerae E7946 ATCC 55056

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_17220 phosphonate utilization transcriptional regulator PhnR 1.0 CSW01_04635 methionine ABC transporter substrate-binding protein MetQ 0.55 10
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_02400 MFS transporter 0.33 AO353_11595 methionine ABC transporter substrate-binding protein 0.17 101
Pseudomonas sp. DMC3 0.47 GFF2592 Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons 0.33 GFF642 D-methionine-binding lipoprotein MetQ low > 89
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_19385 MFS transporter 0.34 AO356_11520 methionine ABC transporter substrate-binding protein low > 104
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_3749 2-aminoethylphosphonate uptake and metabolism regulator 0.33 Pf1N1B4_1714 Methionine ABC transporter substrate-binding protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_5791 2-aminoethylphosphonate uptake and metabolism regulator 0.33 Pf6N2E2_4174 Methionine ABC transporter substrate-binding protein low > 103
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_4198 2-aminoethylphosphonate uptake and metabolism regulator 0.33 PfGW456L13_604 Methionine ABC transporter substrate-binding protein low > 87
Pseudomonas sp. SVBP6 0.46 COO64_RS06940 phnR phosphonate utilization transcriptional regulator PhnR 0.33 COO64_RS12570 MetQ/NlpA family ABC transporter substrate-binding protein low > 93
Pseudomonas segetis P6 0.46 MPMX49_01786 Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons 0.35 MPMX49_00331 D-methionine-binding lipoprotein MetQ low > 75
Pseudomonas sp. RS175 0.46 PFR28_03159 Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons 0.32 PFR28_04818 Methionine-binding lipoprotein MetQ low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_1607 transcriptional regulator, GntR family 0.34 Psyr_0328 NLPA lipoprotein low > 86
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS10020 UTRA domain-containing protein 0.34 PFLU_RS01080 ABC transporter substrate-binding protein low > 109
Pseudomonas fluorescens SBW25 0.45 PFLU_RS10020 UTRA domain-containing protein 0.34 PFLU_RS01080 ABC transporter substrate-binding protein low > 109
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_1607 transcriptional regulator, GntR family 0.34 Psyr_0328 NLPA lipoprotein low > 86
Pseudomonas sp. BP01 0.45 JOY50_RS27920 UTRA domain-containing protein 0.35 JOY50_RS20545 MetQ/NlpA family ABC transporter substrate-binding protein low > 84
Pseudomonas sp. S08-1 0.44 OH686_19750 Transcriptional regulator, GntR family 0.36 OH686_12270 Methionine ABC transporter substrate-binding protein low > 80
Pseudomonas aeruginosa PA14 0.44 IKLFDK_16615 MFS transporter 0.34 IKLFDK_25885 methionine ABC transporter substrate-binding protein low > 98
Pseudomonas lactucae CFBP13502 0.44 GEMAOFIL_02105 Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons 0.34 GEMAOFIL_00428 putative D-methionine-binding lipoprotein MetQ low > 96
Pseudomonas orientalis W4I3 0.44 QF045_RS12005 UTRA domain-containing protein 0.34 QF045_RS03295 MetQ/NlpA family ABC transporter substrate-binding protein low > 93
Pantoea sp. MT58 0.43 IAI47_17920 UTRA domain-containing protein 0.70 IAI47_15395 MetQ/NlpA family lipoprotein low > 76
Klebsiella pneumoniae MKP103 0.43 KDGMDA_08455 phosphonate utilization transcriptional regulator PhnR 0.71 KDGMDA_13605 methionine ABC transporter substrate-binding lipoprotein MetQ low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF4332 2-aminoethylphosphonate uptake and metabolism regulator 0.71 GFF23 Methionine ABC transporter substrate-binding protein low > 78
Rahnella sp. WP5 0.42 EX31_RS11765 UTRA domain-containing protein 0.71 EX31_RS12890 MetQ/NlpA family lipoprotein low > 89
Pantoea agglomerans CFBP13505 P0401 0.42 PagCFBP13505_RS22230 UTRA domain-containing protein 0.70 PagCFBP13505_RS13610 MetQ/NlpA family lipoprotein low > 74
Serratia liquefaciens MT49 0.42 IAI46_10825 phosphonate utilization transcriptional regulator PhnR 0.71 IAI46_20085 MetQ/NlpA family lipoprotein low > 87
Dickeya dadantii 3937 0.37 DDA3937_RS17460 UTRA domain-containing protein 0.71 DDA3937_RS16855 MetQ/NlpA family lipoprotein low > 74
Dickeya dianthicola ME23 0.37 DZA65_RS18590 UTRA domain-containing protein 0.70 DZA65_RS18000 MetQ/NlpA family lipoprotein low > 75
Dickeya dianthicola 67-19 0.37 HGI48_RS17525 UTRA domain-containing protein 0.70 HGI48_RS16925 MetQ/NlpA family lipoprotein low > 71
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.4418.1 Transcriptional regulator, GntR family 0.33 Xcc-8004.4601.1 Methionine ABC transporter substrate-binding protein low > 74
Acinetobacter baumannii LAC-4 0.33 RR41_RS10960 UTRA domain-containing protein 0.24 RR41_RS11625 MetQ/NlpA family ABC transporter substrate-binding protein low > 55
Escherichia coli ECRC62 0.26 BNILDI_05320 yihL Uncharacterized HTH-type transcriptional regulator YihL 0.71 BNILDI_09265 metQ methionine ABC transporter substrate-binding lipoprotein MetQ low > 75
Escherichia coli ECRC102 0.26 NIAGMN_11835 yihL Uncharacterized HTH-type transcriptional regulator YihL 0.71 NIAGMN_07910 metQ methionine ABC transporter substrate-binding lipoprotein MetQ low > 80
Escherichia coli ECOR38 0.26 HEPCGN_12710 yihL Uncharacterized HTH-type transcriptional regulator YihL 0.71 HEPCGN_08000 metQ methionine ABC transporter substrate-binding lipoprotein MetQ low > 88
Escherichia coli ECRC100 0.26 OKFHMN_14080 yihL Uncharacterized HTH-type transcriptional regulator YihL 0.71 OKFHMN_10060 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.67 23
Escherichia coli ECRC98 0.26 JDDGAC_17705 yihL Uncharacterized HTH-type transcriptional regulator YihL 0.71 JDDGAC_13655 metQ methionine ABC transporter substrate-binding lipoprotein MetQ low > 87
Escherichia coli BW25113 0.26 b3872 yihL predicted DNA-binding transcriptional regulator (NCBI) 0.71 b0197 metQ DL-methionine transporter subunit (NCBI) low > 76
Escherichia coli BL21 0.26 ECD_03757 putative DNA-binding transcriptional regulator 0.71 ECD_00196 DL-methionine transporter subunit low > 61
Escherichia fergusonii Becca 0.26 EFB2_04744 Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons 0.71 EFB2_03846 D-methionine-binding lipoprotein MetQ low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_04180 Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons 0.71 OHPLBJKB_03464 D-methionine-binding lipoprotein MetQ low > 74
Escherichia coli ECRC101 0.26 MCAODC_04580 yihL Uncharacterized HTH-type transcriptional regulator YihL 0.71 MCAODC_00575 metQ methionine ABC transporter substrate-binding lipoprotein MetQ low > 87
Escherichia coli Nissle 1917 0.26 ECOLIN_RS22320 GntR family transcriptional regulator 0.71 ECOLIN_RS01085 methionine ABC transporter substrate-binding lipoprotein MetQ — —
Escherichia coli ECOR27 0.26 NOLOHH_06210 yihL Uncharacterized HTH-type transcriptional regulator YihL 0.71 NOLOHH_02405 metQ methionine ABC transporter substrate-binding lipoprotein MetQ low > 76
Escherichia coli ECRC99 0.26 KEDOAH_14070 yihL Uncharacterized HTH-type transcriptional regulator YihL 0.70 KEDOAH_18095 metQ methionine ABC transporter substrate-binding lipoprotein MetQ — —
Paraburkholderia bryophila 376MFSha3.1 0.19 H281DRAFT_00558 transcriptional regulator, GntR family 0.43 H281DRAFT_01982 D-methionine transport system substrate-binding protein low > 103
Herbaspirillum seropedicae SmR1 0.18 HSERO_RS22990 transcriptional regulator 0.43 HSERO_RS04970 dioxygenase low > 78
Ralstonia sp. UNC404CL21Col 0.18 ABZR87_RS18335 GntR family transcriptional regulator 0.43 ABZR87_RS09540 MetQ/NlpA family ABC transporter substrate-binding protein low > 80
Paraburkholderia sabiae LMG 24235 0.17 QEN71_RS14195 phosphonate metabolism transcriptional regulator PhnF 0.47 QEN71_RS04170 MetQ/NlpA family ABC transporter substrate-binding protein low > 153
Caulobacter crescentus NA1000 0.17 CCNA_00454 GntR-family transcriptional regulator 0.31 CCNA_02747 ABC transporter substrate-binding protein low > 66
Azospirillum sp. SherDot2 0.17 MPMX19_03609 HTH-type transcriptional repressor NagR 0.44 MPMX19_05549 D-methionine-binding lipoprotein MetQ low > 112
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_00454 GntR-family transcriptional regulator 0.31 CCNA_02747 ABC transporter substrate-binding protein low > 67
Enterobacter asburiae PDN3 0.16 EX28DRAFT_2262 Transcriptional regulators 0.71 EX28DRAFT_3785 lipoprotein, YaeC family 0.73 15
Variovorax sp. OAS795 0.16 ABID97_RS27715 GntR family transcriptional regulator 0.38 ABID97_RS21750 MetQ/NlpA family ABC transporter substrate-binding protein low > 91
Rhizobium sp. OAE497 0.16 ABIE40_RS29905 GntR family transcriptional regulator 0.46 ABIE40_RS23105 MetQ/NlpA family ABC transporter substrate-binding protein low > 107
Rhodopseudomonas palustris CGA009 0.15 TX73_003600 phosphonate metabolism transcriptional regulator PhnF 0.39 TX73_007330 MetQ/NlpA family ABC transporter substrate-binding protein low > 86
Enterobacter sp. TBS_079 0.15 MPMX20_01358 Mannosyl-D-glycerate transport/metabolism system repressor MngR 0.71 MPMX20_00881 D-methionine-binding lipoprotein MetQ low > 85
Klebsiella michiganensis M5al 0.15 BWI76_RS27890 GntR family transcriptional regulator 0.71 BWI76_RS05355 methionine ABC transporter substrate-binding protein MetQ low > 92
Pectobacterium carotovorum WPP14 0.15 HER17_RS16070 GntR family transcriptional regulator 0.71 HER17_RS04370 MetQ/NlpA family lipoprotein low > 75
Sinorhizobium meliloti 1021 0.15 SMc03140 transcriptional regulator 0.44 SMc03157 outer membrane lipoprotein transmembrane low > 103
Burkholderia phytofirmans PsJN 0.15 BPHYT_RS29455 GntR family transcriptional regulator 0.43 BPHYT_RS02715 dioxygenase — —
Bosea sp. OAE506 0.15 ABIE41_RS17185 GntR family transcriptional regulator 0.39 ABIE41_RS03510 MetQ/NlpA family ABC transporter substrate-binding protein 0.26 53
Xanthobacter sp. DMC5 0.15 GFF4075 HTH-type transcriptional repressor NagR 0.43 GFF2935 D-methionine-binding lipoprotein MetQ — —
Rhodanobacter denitrificans MT42 0.14 LRK55_RS07595 GntR family transcriptional regulator 0.35 LRK55_RS14440 MetQ/NlpA family ABC transporter substrate-binding protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS07865 GntR family transcriptional regulator 0.35 LRK54_RS14725 MetQ/NlpA family ABC transporter substrate-binding protein low > 59
Rhodanobacter sp000427505 FW510-R12 0.14 LRK53_RS00680 GntR family transcriptional regulator 0.37 LRK53_RS13870 MetQ/NlpA family ABC transporter substrate-binding protein low > 59
Dyella japonica UNC79MFTsu3.2 0.14 ABZR86_RS14705 GntR family transcriptional regulator 0.35 ABZR86_RS00465 MetQ/NlpA family ABC transporter substrate-binding protein low > 74
Azospirillum brasilense Sp245 0.14 AZOBR_RS15620 GntR family transcriptional regulator 0.42 AZOBR_RS19465 dioxygenase low > 97
Rhodanobacter sp. FW510-T8 0.14 OKGIIK_14355 mngR GntR family transcriptional regulator 0.35 OKGIIK_03550 nlpA methionine ABC transporter substrate-binding protein low > 53
Bifidobacterium breve UCC2003 0.13 BBR_RS20315 GntR family transcriptional regulator 0.25 BBR_RS14445 Solute-binding protein of ABC transporter system low > 34

Not shown: 8 genomes with orthologs for CSW01_17220 only; 20 genomes with orthologs for CSW01_04635 only