Conservation of cofitness between CSW01_09970 and CSW01_03470 in Vibrio cholerae E7946 ATCC 55056

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09970 peptide-methionine (R)-S-oxide reductase 1.0 CSW01_03470 peptide chain release factor 3 0.85 20
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF3479 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.86 GFF1035 Peptide chain release factor 3 low > 78
Enterobacter asburiae PDN3 0.54 EX28DRAFT_1772 methionine-R-sulfoxide reductase 0.87 EX28DRAFT_3583 peptide chain release factor 3 0.58 30
Enterobacter sp. TBS_079 0.54 MPMX20_01845 Peptide methionine sulfoxide reductase MsrB 0.87 MPMX20_00673 Peptide chain release factor RF3 low > 85
Pseudomonas aeruginosa PUPa3 0.53 DQ20_RS32735 msrB;go_function=peptide-methionine peptide-methionine (R)-S-oxide reductase MsrB 0.69 DQ20_RS48655 peptide chain release factor 3 low > 101
Pseudomonas aeruginosa PA14 0.53 IKLFDK_14360 Peptide methionine sulfoxide reductase MsrB 0.69 IKLFDK_20120 peptide chain release factor 3 low > 98
Pseudomonas aeruginosa MRSN321 0.53 DY961_RS02860 msrB;go_function=peptide-methionine peptide-methionine (R)-S-oxide reductase MsrB 0.69 DY961_RS13355 peptide chain release factor 3 low > 100
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_01954 Peptide methionine sulfoxide reductase MsrB 0.86 OHPLBJKB_03687 Peptide chain release factor RF3 low > 74
Pseudomonas stutzeri RCH2 0.52 Psest_1773 methionine-R-sulfoxide reductase 0.70 Psest_3351 peptide chain release factor 3 low > 67
Escherichia coli ECRC101 0.52 MCAODC_18675 msrB Peptide methionine sulfoxide reductase MsrB 0.86 MCAODC_01795 prfC peptide chain release factor 3 low > 87
Escherichia fergusonii Becca 0.52 EFB2_02216 Peptide methionine sulfoxide reductase MsrB 0.86 EFB2_04072 Peptide chain release factor RF3 low > 86
Escherichia coli ECRC99 0.52 KEDOAH_01375 msrB Peptide methionine sulfoxide reductase MsrB 0.86 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia coli ECOR27 0.52 NOLOHH_17265 msrB Peptide methionine sulfoxide reductase MsrB 0.86 NOLOHH_03600 prfC peptide chain release factor 3 0.40 20
Escherichia coli ECOR38 0.52 HEPCGN_05125 msrB Peptide methionine sulfoxide reductase MsrB 0.86 HEPCGN_09285 prfC peptide chain release factor 3 low > 88
Escherichia coli ECRC100 0.52 OKFHMN_26735 msrB Peptide methionine sulfoxide reductase MsrB 0.86 OKFHMN_11280 prfC peptide chain release factor 3 low > 79
Escherichia coli ECRC62 0.52 BNILDI_16050 msrB Peptide methionine sulfoxide reductase MsrB 0.86 BNILDI_08000 prfC peptide chain release factor 3 low > 75
Escherichia coli BW25113 0.52 b1778 yeaA methionine sulfoxide reductase B (NCBI) 0.86 b4375 prfC peptide chain release factor 3 (NCBI) low > 76
Escherichia coli BL21 0.52 ECD_01747 methionine sulfoxide reductase B 0.86 ECD_04250 peptide chain release factor RF-3 low > 61
Escherichia coli ECRC98 0.52 JDDGAC_01310 msrB Peptide methionine sulfoxide reductase MsrB 0.86 JDDGAC_14875 prfC peptide chain release factor 3 low > 87
Escherichia coli Nissle 1917 0.52 ECOLIN_RS09915 peptide-methionine (R)-S-oxide reductase MsrB 0.86 ECOLIN_RS25110 peptide chain release factor 3 — —
Escherichia coli ECRC102 0.52 NIAGMN_01330 msrB Peptide methionine sulfoxide reductase MsrB 0.86 NIAGMN_09130 prfC peptide chain release factor 3 — —
Acinetobacter radioresistens SK82 0.52 MPMX26_01870 Peptide methionine sulfoxide reductase MsrB 0.68 MPMX26_00476 Peptide chain release factor RF3 low > 36
Klebsiella pneumoniae MKP103 0.52 KDGMDA_19185 Peptide methionine sulfoxide reductase MsrB 0.86 KDGMDA_12370 peptide chain release factor 3 low > 95
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_2253 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.69 PfGW456L13_5060 Peptide chain release factor 3 low > 87
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_03085 peptide methionine sulfoxide reductase 0.69 AO356_07285 peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_19155 peptide methionine sulfoxide reductase 0.69 AO353_05420 peptide chain release factor 3 low > 101
Pseudomonas fluorescens SBW25 0.50 PFLU_RS08515 peptide-methionine (R)-S-oxide reductase MsrB 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas sp. DMC3 0.50 GFF4595 Peptide methionine sulfoxide reductase MsrB 0.69 GFF5016 Peptide chain release factor RF3 low > 89
Pseudomonas fluorescens FW300-N2E2 0.50 Pf6N2E2_2445 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.69 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas fluorescens SBW25-INTG 0.50 PFLU_RS08515 peptide-methionine (R)-S-oxide reductase MsrB 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas simiae WCS417 0.49 PS417_08565 peptide methionine sulfoxide reductase 0.69 PS417_04030 peptide chain release factor 3 — —
Pseudomonas sp. SVBP6 0.49 COO64_RS05975 msrB peptide-methionine (R)-S-oxide reductase MsrB 0.69 COO64_RS04060 peptide chain release factor 3 low > 93
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_3614 Protein of unknown function DUF25 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas sp. RS175 0.49 PFR28_00985 Peptide methionine sulfoxide reductase MsrB 0.69 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_3614 Protein of unknown function DUF25 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas sp. BP01 0.49 JOY50_RS16980 msrB peptide-methionine (R)-S-oxide reductase MsrB 0.69 JOY50_RS22670 peptide chain release factor 3 low > 84
Pseudomonas sp. S08-1 0.49 OH686_22580 Peptide-methionine (R)-S-oxide reductase MsrB 0.69 OH686_08765 peptide chain release factor 3 — —
Synechococcus elongatus PCC 7942 0.49 Synpcc7942_2190 msrB Methionine sulfoxide reductase B 0.42 Synpcc7942_2365 prfC peptide chain release factor 3 low > 38
Sinorhizobium meliloti 1021 0.49 SMc00117 hypothetical protein 0.49 SMc00427 peptide chain release factor RF-3 protein low > 103
Pseudomonas lactucae CFBP13502 0.49 GEMAOFIL_01845 Peptide methionine sulfoxide reductase MsrB 0.69 GEMAOFIL_01011 Peptide chain release factor RF3 low > 96
Pseudomonas orientalis W4I3 0.49 QF045_RS11290 peptide-methionine (R)-S-oxide reductase MsrB 0.69 QF045_RS07015 peptide chain release factor 3 low > 93
Pseudomonas putida KT2440 0.48 PP_1873 Peptide methionine sulfoxide reductase MsrB 0.69 PP_0872 Peptide chain release factor 3 low > 96
Acinetobacter baumannii LAC-4 0.47 RR41_RS11540 peptide-methionine (R)-S-oxide reductase MsrB 0.67 RR41_RS16200 peptide chain release factor 3 — —
Ralstonia solanacearum PSI07 0.47 RPSI07_RS16290 peptide-methionine (R)-S-oxide reductase 0.59 RPSI07_RS07810 peptide chain release factor 3 low > 81
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS11250 peptide-methionine (R)-S-oxide reductase MsrB 0.66 ABZR86_RS19000 peptide chain release factor 3 — —
Ralstonia solanacearum GMI1000 0.47 RS_RS08825 peptide-methionine (R)-S-oxide reductase 0.59 RS_RS25080 peptide chain release factor 3 low > 80
Ralstonia solanacearum UW163 0.47 UW163_RS14495 peptide-methionine (R)-S-oxide reductase 0.60 UW163_RS16595 peptide chain release factor 3 — —
Ralstonia solanacearum IBSBF1503 0.47 RALBFv3_RS01185 peptide-methionine (R)-S-oxide reductase 0.60 RALBFv3_RS23345 peptide chain release factor 3 low > 76
Sphingobium sp. HT1-2 0.47 GFF4143 Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12) 0.48 GFF3317 Peptide chain release factor 3 low > 95
Castellaniella sp019104865 MT123 0.46 ABCV34_RS08520 peptide-methionine (R)-S-oxide reductase MsrB 0.53 ABCV34_RS12505 peptide chain release factor 3 low > 48
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS09545 peptide methionine sulfoxide reductase 0.51 BPHYT_RS34275 peptide chain release factor 3 low > 109
Paraburkholderia graminis OAS925 0.46 ABIE53_002148 peptide-methionine (R)-S-oxide reductase 0.51 ABIE53_004717 peptide chain release factor 3 low > 113
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_00913 peptide-methionine (R)-S-oxide reductase 0.52 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) low > 103
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS11165 methionine sulfoxide reductase B 0.61 RR42_RS37475 peptide chain release factor 3 low > 128
Magnetospirillum magneticum AMB-1 0.45 AMB_RS20830 peptide-methionine (R)-S-oxide reductase 0.54 AMB_RS01375 peptide chain release factor 3 — —
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS11215 methionine sulfoxide reductase B 0.62 HSERO_RS14640 peptide chain release factor 3 low > 78
Variovorax sp. SCN45 0.44 GFF1329 Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12) 0.51 GFF2045 Peptide chain release factor 3 low > 127
Rhodopseudomonas palustris CGA009 0.44 TX73_021075 peptide-methionine (R)-S-oxide reductase MsrB 0.49 TX73_011820 peptide chain release factor 3 low > 86
Acidovorax sp. GW101-3H11 0.42 Ac3H11_2535 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.52 Ac3H11_3041 Peptide chain release factor 3 — —
Caulobacter crescentus NA1000 0.42 CCNA_02265 peptide methionine sulfoxide reductase msrB 0.44 CCNA_01123 peptide chain release factor RF-3 low > 66
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_02265 peptide methionine sulfoxide reductase msrB 0.44 CCNA_01123 peptide chain release factor RF-3 low > 67
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.4624.1 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.63 Xcc-8004.1590.1 Peptide chain release factor 3 — —
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS15535 methionine sulfoxide reductase B 0.46 CA265_RS18435 peptide chain release factor 3 low > 88

Not shown: 3 genomes with orthologs for CSW01_09970 only; 51 genomes with orthologs for CSW01_03470 only