Conservation of cofitness between CSW01_10815 and CSW01_03170 in Vibrio cholerae E7946 ATCC 55056

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10815 Cys-tRNA(Pro) deacylase 1.0 CSW01_03170 ATP-dependent helicase HrpB 0.47 10
Marinobacter adhaerens HP15 0.57 HP15_3802 conserved hypothetical protein CHP00011 0.37 HP15_3782 RNA helicase, ATP-dependent DEAH box, HrpB type low > 73
Pectobacterium carotovorum WPP14 0.57 HER17_RS15635 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.43 HER17_RS05595 ATP-dependent helicase HrpB low > 75
Escherichia fergusonii Becca 0.56 EFB2_03577 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 EFB2_03896 ATP-dependent RNA helicase HrpB low > 86
Escherichia coli Nissle 1917 0.56 ECOLIN_RS02850 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 ECOLIN_RS00830 ATP-dependent helicase HrpB — —
Pantoea agglomerans CFBP13505 P0401 0.55 PagCFBP13505_RS10790 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.41 PagCFBP13505_RS13385 ATP-dependent helicase HrpB low > 74
Escherichia coli BL21 0.55 ECD_00432 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase 0.44 ECD_00147 putative ATP-dependent helicase low > 61
Escherichia coli ECOR38 0.55 HEPCGN_06725 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 HEPCGN_08280 hrpB ATP-dependent helicase HrpB low > 88
Escherichia coli BW25113 0.55 b0481 ybaK hypothetical protein (NCBI) 0.43 b0148 hrpB helicase, ATP-dependent (VIMSS) low > 76
Escherichia coli ECRC62 0.55 BNILDI_22455 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.43 BNILDI_08995 hrpB ATP-dependent helicase HrpB low > 75
Escherichia coli ECOR27 0.55 NOLOHH_01035 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.43 NOLOHH_02675 hrpB ATP-dependent helicase HrpB low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03193 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.43 OHPLBJKB_03514 hypothetical protein low > 74
Rahnella sp. WP5 0.55 EX31_RS22565 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 EX31_RS03235 ATP-dependent helicase HrpB low > 89
Serratia liquefaciens MT49 0.55 IAI46_05300 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 IAI46_21195 ATP-dependent helicase HrpB low > 87
Pseudomonas stutzeri RCH2 0.55 Psest_1454 ybaK/ebsC protein 0.36 Psest_0629 ATP-dependent helicase HrpB low > 67
Escherichia coli ECRC101 0.55 MCAODC_27325 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 MCAODC_00845 hrpB ATP-dependent helicase HrpB low > 87
Escherichia coli ECRC102 0.55 NIAGMN_06155 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 NIAGMN_08180 hrpB ATP-dependent helicase HrpB low > 80
Escherichia coli ECRC100 0.55 OKFHMN_08105 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 OKFHMN_10330 hrpB ATP-dependent helicase HrpB low > 79
Escherichia coli ECRC98 0.55 JDDGAC_11750 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 JDDGAC_13925 hrpB ATP-dependent helicase HrpB low > 87
Escherichia coli ECRC99 0.55 KEDOAH_19865 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 KEDOAH_17825 hrpB ATP-dependent helicase HrpB — —
Erwinia amylovora T8 0.54 OLJFJH_17720 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 OLJFJH_00750 ATP-dependent helicase HrpB low > 58
Pantoea sp. MT58 0.54 IAI47_14410 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.41 IAI47_15620 ATP-dependent helicase HrpB low > 76
Enterobacter sp. TBS_079 0.54 MPMX20_01082 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 MPMX20_00834 ATP-dependent RNA helicase HrpB low > 85
Klebsiella pneumoniae MKP103 0.54 KDGMDA_14930 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 KDGMDA_13285 ATP-dependent helicase HrpB low > 95
Klebsiella michiganensis M5al 0.54 BWI76_RS06870 aminoacyl-tRNA deacylase 0.44 BWI76_RS05030 ATP-dependent helicase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF4401 Cys-tRNA(Pro) deacylase YbaK 0.43 GFF84 ATP-dependent helicase HrpB low > 78
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_3903 Conserved hypothetical protein 11 0.35 Psyr_4320 ATP-dependent helicase HrpB low > 86
Pseudomonas sp. DMC3 0.53 GFF5105 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.35 GFF3915 ATP-dependent RNA helicase HrpB low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_3903 Conserved hypothetical protein 11 0.35 Psyr_4320 ATP-dependent helicase HrpB low > 86
Pseudomonas sp. BP01 0.53 JOY50_RS14880 ybaK Cys-tRNA(Pro) deacylase 0.35 JOY50_RS21795 hrpB ATP-dependent helicase HrpB low > 84
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_01304 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.36 GEMAOFIL_05058 ATP-dependent RNA helicase HrpB low > 96
Pseudomonas putida KT2440 0.53 PP_1077 Cys-tRNAPro deacylase 0.35 PP_4772 ATP-dependent helicase HrpB low > 96
Enterobacter asburiae PDN3 0.53 EX28DRAFT_2477 Cys-tRNA(Pro) deacylase 0.44 EX28DRAFT_3737 ATP-dependent helicase HrpB low > 76
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_765 Cys-tRNA(Pro) deacylase YbaK 0.35 Pf1N1B4_2728 ATP-dependent helicase HrpB low > 87
Pseudomonas aeruginosa PA14 0.52 IKLFDK_18280 Cys-tRNA(Pro) deacylase 0.36 IKLFDK_20430 ATP-dependent helicase HrpB low > 98
Pseudomonas aeruginosa MRSN321 0.52 DY961_RS15090 ybaK;go_function=aminoacyl-tRNA Cys-tRNA(Pro) deacylase 0.37 DY961_RS13050 hrpB;go_function=helicase ATP-dependent helicase HrpB low > 100
Desulfovibrio vulgaris Miyazaki F 0.52 DvMF_2065 ybaK/ebsC protein (RefSeq) 0.30 DvMF_0192 ATP-dependent helicase HrpB (RefSeq) low > 51
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_1736 Cys-tRNA(Pro) deacylase YbaK 0.36 PfGW456L13_1395 ATP-dependent helicase HrpB low > 87
Pseudomonas aeruginosa PUPa3 0.52 DQ20_RS42050 ybaK;go_function=aminoacyl-tRNA Cys-tRNA(Pro) deacylase 0.36 DQ20_RS48375 hrpB;go_function=helicase ATP-dependent helicase HrpB low > 101
Pseudomonas sp. S08-1 0.52 OH686_20370 Cys-tRNA(Pro) deacylase YbaK 0.37 OH686_08800 ATP-dependent helicase HrpB low > 80
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_5576 Cys-tRNA(Pro) deacylase YbaK 0.37 Pf6N2E2_5038 ATP-dependent helicase HrpB low > 103
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_18260 hypothetical protein 0.36 AO356_15485 ATP-dependent helicase low > 104
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_04170 hypothetical protein 0.35 AO353_06300 ATP-dependent helicase low > 101
Pseudomonas sp. RS175 0.51 PFR28_03366 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.36 PFR28_03833 ATP-dependent RNA helicase HrpB low > 88
Pseudomonas fluorescens SBW25 0.51 PFLU_RS05670 Cys-tRNA(Pro) deacylase 0.36 PFLU_RS26480 ATP-dependent helicase HrpB low > 109
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS05670 Cys-tRNA(Pro) deacylase 0.36 PFLU_RS26480 ATP-dependent helicase HrpB low > 109
Pseudomonas sp. SVBP6 0.51 COO64_RS16810 ybaK Cys-tRNA(Pro) deacylase 0.36 COO64_RS15435 hrpB ATP-dependent helicase HrpB low > 93
Erwinia tracheiphila HP pepo 2.2 0.50 IJEDHG_01120 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 IJEDHG_15075 hrpB ATP-dependent RNA helicase HrpB low > 61
Pseudomonas simiae WCS417 0.50 PS417_05585 hypothetical protein 0.37 PS417_24550 ATP-dependent helicase low > 88
Shewanella oneidensis MR-1 0.50 SO1124 conserved hypothetical protein TIGR00011 (NCBI ptt file) 0.39 SO0632 hrpB ATP-dependent helicase HrpB (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.50 DDA3937_RS05835 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.43 DDA3937_RS15920 ATP-dependent helicase HrpB low > 74
Shewanella sp. ANA-3 0.50 Shewana3_0957 ybaK/ebsC protein (RefSeq) 0.38 Shewana3_0622 ATP-dependent helicase HrpB (RefSeq) low > 73
Pseudomonas orientalis W4I3 0.50 QF045_RS08510 Cys-tRNA(Pro) deacylase 0.36 QF045_RS26835 ATP-dependent helicase HrpB — —
Alteromonas macleodii MIT1002 0.49 MIT1002_01641 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.28 MIT1002_00406 ATP-dependent RNA helicase HrpB low > 70
Shewanella amazonensis SB2B 0.49 Sama_0531 YbaK/EbsC protein (RefSeq) 0.37 Sama_2972 ATP-dependent helicase HrpB (RefSeq) low > 62
Pseudomonas segetis P6 0.45 MPMX49_01431 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.35 MPMX49_01090 ATP-dependent RNA helicase HrpB low > 75
Dickeya dianthicola 67-19 0.43 HGI48_RS05880 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.43 HGI48_RS16035 ATP-dependent helicase HrpB low > 71
Dickeya dianthicola ME23 0.43 DZA65_RS06215 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.43 DZA65_RS17120 ATP-dependent helicase HrpB low > 75
Shewanella loihica PV-4 0.42 Shew_0016 ybaK/ebsC protein (RefSeq) 0.35 Shew_3124 ATP-dependent helicase HrpB (RefSeq) — —
Azospirillum sp. SherDot2 0.41 MPMX19_02507 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.34 MPMX19_00095 ATP-dependent RNA helicase HrpB low > 112
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_01014 cysteinyl-tRNA(Pro) deacylase 0.33 CCNA_01243 ATP-dependent helicase hrpB low > 67
Caulobacter crescentus NA1000 0.37 CCNA_01014 cysteinyl-tRNA(Pro) deacylase 0.33 CCNA_01243 ATP-dependent helicase hrpB low > 66
Rhizobium sp. OAE497 0.35 ABIE40_RS01230 Cys-tRNA(Pro) deacylase 0.35 ABIE40_RS19515 ATP-dependent helicase HrpB low > 107
Rhodospirillum rubrum S1H 0.35 Rru_A3668 hypothetical protein (NCBI) 0.32 Rru_A2365 ATP-dependent helicase HrpB (NCBI) low > 58
Sinorhizobium meliloti 1021 0.34 SMc00385 hypothetical protein 0.35 SMc02586 ATP-dependent helicase low > 103
Agrobacterium fabrum C58 0.32 Atu0275 hypothetical protein 0.35 Atu0052 helicase — —
Magnetospirillum magneticum AMB-1 0.32 AMB_RS00065 Cys-tRNA(Pro) deacylase 0.33 AMB_RS06395 ATP-dependent helicase HrpB — —
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS11465 Cys-tRNA(Pro) deacylase 0.32 A4249_RS05425 ATP-dependent helicase HrpB low > 48
Rhodopseudomonas palustris CGA009 0.29 TX73_022270 Cys-tRNA(Pro) deacylase 0.34 TX73_002770 ATP-dependent helicase HrpB low > 86
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.4192.1 Cys-tRNA(Pro) deacylase YbaK 0.32 Xcc-8004.354.1 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. low > 74

Not shown: 28 genomes with orthologs for CSW01_10815 only; 15 genomes with orthologs for CSW01_03170 only