Conservation of cofitness between CSW01_16800 and CSW01_02840 in Vibrio cholerae E7946 ATCC 55056

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_16800 anaerobic ribonucleoside-triphosphate reductase 1.0 CSW01_02840 DNA mismatch repair protein MutS 0.53 17
Rahnella sp. WP5 0.79 EX31_RS08395 anaerobic ribonucleoside-triphosphate reductase 0.70 EX31_RS07820 DNA mismatch repair protein MutS low > 89
Enterobacter sp. TBS_079 0.79 MPMX20_00531 Anaerobic ribonucleoside-triphosphate reductase 0.69 MPMX20_03619 DNA mismatch repair protein MutS low > 85
Dickeya dianthicola ME23 0.79 DZA65_RS01880 anaerobic ribonucleoside-triphosphate reductase 0.70 DZA65_RS05570 DNA mismatch repair protein MutS low > 75
Shewanella oneidensis MR-1 0.79 SO2834 nrdD anaerobic ribonucleoside-triphosphate reductase (NCBI ptt file) 0.64 SO3431 mutS DNA mismatch repair protein MutS (NCBI ptt file) low > 76
Escherichia coli ECRC102 0.79 NIAGMN_09755 nrdD anaerobic ribonucleoside-triphosphate reductase 0.68 NIAGMN_18295 mutS DNA mismatch repair protein MutS low > 80
Escherichia coli ECRC99 0.79 KEDOAH_16250 nrdD anaerobic ribonucleoside-triphosphate reductase 0.68 KEDOAH_07610 mutS DNA mismatch repair protein MutS — —
Serratia liquefaciens MT49 0.79 IAI46_02135 anaerobic ribonucleoside-triphosphate reductase 0.70 IAI46_03800 DNA mismatch repair protein MutS low > 87
Escherichia coli ECRC101 0.79 MCAODC_02410 nrdD anaerobic ribonucleoside-triphosphate reductase 0.68 MCAODC_11050 mutS DNA mismatch repair protein MutS low > 87
Escherichia coli ECRC100 0.79 OKFHMN_11905 nrdD anaerobic ribonucleoside-triphosphate reductase 0.68 OKFHMN_20525 mutS DNA mismatch repair protein MutS low > 79
Dickeya dianthicola 67-19 0.79 HGI48_RS01825 anaerobic ribonucleoside-triphosphate reductase 0.70 HGI48_RS05230 DNA mismatch repair protein MutS low > 71
Escherichia coli ECRC98 0.79 JDDGAC_15545 nrdD anaerobic ribonucleoside-triphosphate reductase 0.68 JDDGAC_24190 mutS DNA mismatch repair protein MutS low > 87
Escherichia coli Nissle 1917 0.79 ECOLIN_RS24585 anaerobic ribonucleoside-triphosphate reductase 0.68 ECOLIN_RS15275 DNA mismatch repair protein MutS low > 55
Escherichia coli ECOR38 0.79 HEPCGN_10100 nrdD anaerobic ribonucleoside-triphosphate reductase 0.68 HEPCGN_19705 mutS DNA mismatch repair protein MutS low > 88
Dickeya dadantii 3937 0.79 DDA3937_RS01875 anaerobic ribonucleoside-triphosphate reductase 0.70 DDA3937_RS05230 DNA mismatch repair protein MutS low > 74
Escherichia coli BL21 0.79 ECD_04106 anaerobic ribonucleoside-triphosphate reductase 0.68 ECD_02583 methyl-directed mismatch repair protein low > 61
Klebsiella pneumoniae MKP103 0.79 KDGMDA_11405 anaerobic ribonucleoside-triphosphate reductase 0.70 KDGMDA_03170 DNA mismatch repair protein MutS low > 95
Escherichia coli ECOR27 0.79 NOLOHH_04170 nrdD anaerobic ribonucleoside-triphosphate reductase 0.68 NOLOHH_12370 mutS DNA mismatch repair protein MutS low > 76
Pectobacterium carotovorum WPP14 0.79 HER17_RS19525 anaerobic ribonucleoside-triphosphate reductase 0.70 HER17_RS16220 DNA mismatch repair protein MutS low > 75
Enterobacter asburiae PDN3 0.79 EX28DRAFT_3437 ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2) 0.69 EX28DRAFT_2829 DNA mismatch repair protein MutS low > 76
Escherichia coli BW25113 0.79 b4238 nrdD anaerobic ribonucleoside triphosphate reductase (NCBI) 0.68 b2733 mutS DNA mismatch repair protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_03797 Anaerobic ribonucleoside-triphosphate reductase 0.68 OHPLBJKB_01000 DNA mismatch repair protein MutS low > 74
Escherichia coli ECRC62 0.79 BNILDI_07340 nrdD anaerobic ribonucleoside-triphosphate reductase 0.68 BNILDI_10920 mutS DNA mismatch repair protein MutS 0.55 68
Escherichia fergusonii Becca 0.79 EFB2_04295 Anaerobic ribonucleoside-triphosphate reductase 0.68 EFB2_01179 DNA mismatch repair protein MutS low > 86
Shewanella sp. ANA-3 0.78 Shewana3_2603 anaerobic ribonucleoside triphosphate reductase (RefSeq) 0.65 Shewana3_1125 DNA mismatch repair protein MutS (RefSeq) low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF919 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) 0.69 GFF4773 DNA mismatch repair protein MutS low > 78
Klebsiella michiganensis M5al 0.78 BWI76_RS02935 anaerobic ribonucleoside triphosphate reductase 0.69 BWI76_RS22600 DNA mismatch repair protein MutS low > 92
Shewanella loihica PV-4 0.78 Shew_2449 anaerobic ribonucleoside triphosphate reductase (RefSeq) 0.66 Shew_1214 DNA mismatch repair protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.76 Sama_1275 anaerobic ribonucleoside triphosphate reductase (RefSeq) 0.64 Sama_1045 DNA mismatch repair protein MutS (RefSeq) low > 62
Pantoea agglomerans CFBP13505 P0401 0.75 PagCFBP13505_RS09020 anaerobic ribonucleoside-triphosphate reductase 0.70 PagCFBP13505_RS16730 DNA mismatch repair protein MutS low > 74
Erwinia tracheiphila HP pepo 2.2 0.75 IJEDHG_14035 nrdD anaerobic ribonucleoside-triphosphate reductase 0.69 IJEDHG_17505 mutS DNA mismatch repair protein MutS low > 61
Erwinia tracheiphila SCR3 0.75 LU632_RS20975 nrdD anaerobic ribonucleoside-triphosphate reductase 0.69 LU632_RS06485 mutS DNA mismatch repair protein MutS low > 73
Pantoea sp. MT58 0.74 IAI47_16925 anaerobic ribonucleoside-triphosphate reductase 0.70 IAI47_04240 DNA mismatch repair protein MutS low > 76
Erwinia amylovora T8 0.73 OLJFJH_07305 anaerobic ribonucleoside-triphosphate reductase 0.69 OLJFJH_09385 DNA mismatch repair protein MutS low > 58
Fusobacterium nucleatum SB010 0.38 HUW76_02665 anaerobic ribonucleoside-triphosphate reductase 0.34 HUW76_04335 DNA mismatch repair protein MutS low > 35
Phocaeicola dorei CL03T12C01 0.20 ABI39_RS08180 anaerobic ribonucleoside triphosphate reductase 0.35 ABI39_RS05500 DNA mismatch repair protein MutS low > 72
Phocaeicola vulgatus CL09T03C04 0.20 HMPREF1058_RS00560 anaerobic ribonucleoside triphosphate reductase 0.35 HMPREF1058_RS11435 DNA mismatch repair protein MutS low > 67
Bacteroides stercoris CC31F 0.20 HMPREF1181_RS15485 anaerobic ribonucleoside triphosphate reductase 0.35 HMPREF1181_RS01980 DNA mismatch repair protein MutS low > 56
Bacteroides thetaiotaomicron VPI-5482 0.19 BT1998 anaerobic ribonucleoside-triphosphate reductase (NCBI ptt file) 0.35 BT3121 DNA mismatch repair protein mutS (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.19 HMPREF1078_RS12530 anaerobic ribonucleoside triphosphate reductase 0.35 HMPREF1078_RS06455 DNA mismatch repair protein MutS low > 61
Bacteroides ovatus ATCC 8483 0.19 BACOVA_01422 anaerobic ribonucleoside-triphosphate reductase 0.36 BACOVA_02824 DNA mismatch repair protein MutS low > 96
Desulfovibrio vulgaris Hildenborough JW710 0.10 DVU0299 anaerobic ribonucleoside-triphosphate reductase, putative (TIGR) 0.32 DVU1649 mutS DNA mismatch repair protein MutS (TIGR) low > 55
Rhodospirillum rubrum S1H 0.10 Rru_A1276 ATP-cone (NCBI) 0.33 Rru_A3541 MutS 1 protein (NCBI) low > 58
Desulfovibrio vulgaris Miyazaki F 0.10 DvMF_1473 anaerobic ribonucleoside triphosphate reductase (RefSeq) 0.33 DvMF_0355 DNA mismatch repair protein MutS (RefSeq) low > 51
Acidovorax sp. GW101-3H11 0.09 Ac3H11_3312 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) 0.44 Ac3H11_3641 DNA mismatch repair protein MutS low > 79
Ralstonia solanacearum IBSBF1503 0.09 RALBFv3_RS16725 ribonucleoside triphosphate reductase 0.47 RALBFv3_RS14920 DNA mismatch repair protein MutS low > 76
Ralstonia solanacearum UW163 0.09 UW163_RS18080 ribonucleoside triphosphate reductase 0.47 UW163_RS12390 DNA mismatch repair protein MutS — —
Ralstonia solanacearum PSI07 0.09 RPSI07_RS06720 ribonucleoside triphosphate reductase 0.48 RPSI07_RS18440 DNA mismatch repair protein MutS low > 81
Pseudomonas lactucae CFBP13502 0.09 GEMAOFIL_03418 Anaerobic ribonucleoside-triphosphate reductase 0.55 GEMAOFIL_01323 DNA mismatch repair protein MutS low > 96
Pseudomonas sp. SVBP6 0.09 COO64_RS14260 ribonucleoside triphosphate reductase 0.56 COO64_RS19805 mutS DNA mismatch repair protein MutS low > 93
Pseudomonas simiae WCS417 0.08 PS417_15690 ribonucleoside-triphosphate reductase 0.55 PS417_05680 DNA mismatch repair protein MutS low > 88
Pseudomonas aeruginosa PUPa3 0.08 DQ20_RS38110 ribonucleoside triphosphate reductase 0.57 DQ20_RS42250 mutS;go_function=ATP DNA mismatch repair protein MutS low > 101
Kangiella aquimarina DSM 16071 0.08 B158DRAFT_1727 ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2) 0.51 B158DRAFT_1529 DNA mismatch repair protein MutS low > 40
Pseudomonas fluorescens FW300-N2E3 0.08 AO353_22125 anaerobic ribonucleoside-triphosphate reductase 0.56 AO353_16625 DNA mismatch repair protein MutS low > 101
Pseudomonas fluorescens FW300-N1B4 0.08 Pf1N1B4_5729 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) 0.55 Pf1N1B4_3117 DNA mismatch repair protein MutS low > 87
Pseudomonas aeruginosa MRSN321 0.08 DY961_RS28630 ribonucleoside triphosphate reductase 0.57 DY961_RS14875 mutS;go_function=ATP DNA mismatch repair protein MutS low > 100
Ralstonia solanacearum GMI1000 0.08 RS_RS21760 ribonucleoside triphosphate reductase 0.47 RS_RS05735 DNA mismatch repair protein MutS low > 80
Pseudomonas aeruginosa PA14 0.08 IKLFDK_09385 ribonucleoside triphosphate reductase 0.57 IKLFDK_18480 DNA mismatch repair protein MutS low > 98
Pseudomonas fluorescens FW300-N2C3 0.08 AO356_25235 anaerobic ribonucleoside-triphosphate reductase 0.56 AO356_05875 DNA mismatch repair protein MutS low > 104
Pseudomonas sp. RS175 0.08 PFR28_01638 Anaerobic ribonucleoside-triphosphate reductase 0.56 PFR28_00429 DNA mismatch repair protein MutS low > 88
Pseudomonas fluorescens FW300-N2E2 0.08 Pf6N2E2_735 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) 0.56 Pf6N2E2_3035 DNA mismatch repair protein MutS low > 103
Pseudomonas stutzeri RCH2 0.08 Psest_0840 anaerobic ribonucleoside-triphosphate reductase 0.56 Psest_2875 DNA mismatch repair protein MutS low > 67
Cupriavidus basilensis FW507-4G11 0.06 RR42_RS08850 ribonucleoside-triphosphate reductase 0.47 RR42_RS06285 DNA mismatch repair protein MutS low > 128

Not shown: 3 genomes with orthologs for CSW01_16800 only; 57 genomes with orthologs for CSW01_02840 only