Conservation of cofitness between CSW01_06950 and CSW01_02530 in Vibrio cholerae E7946 ATCC 55056

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06950 ATP-dependent RNA helicase HrpA 1.0 CSW01_02530 D-erythrose-4-phosphate dehydrogenase 0.66 20
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2632 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.72 GFF3022 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_02301 hypothetical protein 0.70 OHPLBJKB_00789 D-erythrose-4-phosphate dehydrogenase low > 74
Escherichia coli ECRC100 0.71 OKFHMN_01730 hrpA ATP-dependent RNA helicase HrpA 0.70 OKFHMN_19385 epd erythrose-4-phosphate dehydrogenase low > 79
Escherichia coli ECRC101 0.71 MCAODC_16205 hrpA ATP-dependent RNA helicase HrpA 0.70 MCAODC_09905 epd erythrose-4-phosphate dehydrogenase low > 88
Escherichia coli ECRC99 0.71 KEDOAH_26710 hrpA ATP-dependent RNA helicase HrpA 0.70 KEDOAH_08755 epd erythrose-4-phosphate dehydrogenase — —
Enterobacter asburiae PDN3 0.71 EX28DRAFT_1357 RNA helicase HrpA 0.70 EX28DRAFT_2973 erythrose-4-phosphate dehydrogenase low > 76
Enterobacter sp. TBS_079 0.71 MPMX20_02189 hypothetical protein 0.70 MPMX20_03779 D-erythrose-4-phosphate dehydrogenase low > 85
Escherichia coli ECRC102 0.71 NIAGMN_25865 hrpA ATP-dependent RNA helicase HrpA 0.70 NIAGMN_17150 epd erythrose-4-phosphate dehydrogenase low > 80
Escherichia coli ECRC98 0.71 JDDGAC_04220 hrpA ATP-dependent RNA helicase HrpA 0.70 JDDGAC_23015 epd erythrose-4-phosphate dehydrogenase low > 87
Escherichia coli ECOR27 0.71 NOLOHH_19390 hrpA ATP-dependent RNA helicase HrpA 0.70 NOLOHH_11295 epd erythrose-4-phosphate dehydrogenase low > 76
Escherichia coli BL21 0.71 ECD_01368 putative ATP-dependent helicase 0.70 ECD_02758 D-erythrose 4-phosphate dehydrogenase low > 61
Escherichia coli ECRC62 0.71 BNILDI_17845 hrpA ATP-dependent RNA helicase HrpA 0.70 BNILDI_09835 epd erythrose-4-phosphate dehydrogenase low > 75
Escherichia coli BW25113 0.71 b1413 hrpA ATP-dependent helicase (RefSeq) 0.70 b2927 epd D-erythrose 4-phosphate dehydrogenase (NCBI) low > 76
Escherichia coli Nissle 1917 0.71 ECOLIN_RS08180 ATP-dependent RNA helicase HrpA 0.70 ECOLIN_RS16265 erythrose-4-phosphate dehydrogenase — —
Escherichia fergusonii Becca 0.71 EFB2_02565 hypothetical protein 0.71 EFB2_00979 D-erythrose-4-phosphate dehydrogenase low > 86
Klebsiella pneumoniae MKP103 0.71 KDGMDA_20775 ATP-dependent RNA helicase HrpA 0.70 KDGMDA_04460 erythrose-4-phosphate dehydrogenase low > 95
Escherichia coli ECOR38 0.71 HEPCGN_26110 hrpA ATP-dependent RNA helicase HrpA 0.70 HEPCGN_18695 epd erythrose-4-phosphate dehydrogenase low > 88
Klebsiella michiganensis M5al 0.70 BWI76_RS13165 ATP-dependent RNA helicase HrpA 0.70 BWI76_RS23985 erythrose-4-phosphate dehydrogenase 0.23 5
Pantoea sp. MT58 0.70 IAI47_09520 ATP-dependent RNA helicase HrpA 0.69 IAI47_03685 erythrose-4-phosphate dehydrogenase low > 76
Serratia liquefaciens MT49 0.70 IAI46_13330 ATP-dependent RNA helicase HrpA 0.67 IAI46_21015 erythrose-4-phosphate dehydrogenase low > 86
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS06635 ATP-dependent RNA helicase HrpA 0.69 PagCFBP13505_RS16015 erythrose-4-phosphate dehydrogenase low > 74
Rahnella sp. WP5 0.70 EX31_RS06495 ATP-dependent RNA helicase HrpA 0.69 EX31_RS21405 erythrose-4-phosphate dehydrogenase low > 89
Pectobacterium carotovorum WPP14 0.69 HER17_RS09660 ATP-dependent RNA helicase HrpA 0.69 HER17_RS02685 erythrose-4-phosphate dehydrogenase low > 75
Dickeya dadantii 3937 0.69 DDA3937_RS12270 ATP-dependent RNA helicase HrpA 0.68 DDA3937_RS18520 erythrose-4-phosphate dehydrogenase 0.51 66
Erwinia amylovora T8 0.69 OLJFJH_13820 ATP-dependent RNA helicase HrpA 0.68 OLJFJH_08650 erythrose-4-phosphate dehydrogenase 0.37 16
Dickeya dianthicola ME23 0.69 DZA65_RS12800 ATP-dependent RNA helicase HrpA 0.68 DZA65_RS19580 erythrose-4-phosphate dehydrogenase low > 75
Erwinia tracheiphila HP pepo 2.2 0.69 IJEDHG_23640 hrpA ATP-dependent RNA helicase HrpA 0.67 IJEDHG_03375 epd erythrose-4-phosphate dehydrogenase low > 61
Erwinia tracheiphila SCR3 0.69 LU632_RS12630 hrpA ATP-dependent RNA helicase HrpA 0.67 LU632_RS05535 epd erythrose-4-phosphate dehydrogenase 0.59 4
Dickeya dianthicola 67-19 0.69 HGI48_RS12360 ATP-dependent RNA helicase HrpA 0.68 HGI48_RS18445 erythrose-4-phosphate dehydrogenase low > 71
Shewanella loihica PV-4 0.57 Shew_1767 ATP-dependent helicase HrpA (RefSeq) 0.64 Shew_0753 erythrose 4-phosphate dehydrogenase (RefSeq) — —
Shewanella sp. ANA-3 0.57 Shewana3_1897 ATP-dependent helicase HrpA (RefSeq) 0.63 Shewana3_3352 erythrose 4-phosphate dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.57 SO2229 hrpA ATP-dependent helicase HrpA (NCBI ptt file) 0.64 SO0931 epd D-erythrose-4-phosphate dehydrogenase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.57 Sama_1619 ATP-dependent helicase HrpA (RefSeq) 0.64 Sama_2758 erythrose 4-phosphate dehydrogenase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.55 MIT1002_01685 ATP-dependent RNA helicase HrpB 0.67 MIT1002_00862 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas aeruginosa PA14 0.45 IKLFDK_16885 ATP-dependent RNA helicase HrpA 0.48 IKLFDK_22670 erythrose-4-phosphate dehydrogenase low > 100
Pseudomonas sp. SVBP6 0.45 COO64_RS22000 hrpA ATP-dependent RNA helicase HrpA 0.48 COO64_RS17560 epd erythrose-4-phosphate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4467 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.49 PfGW456L13_1065 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas sp. DMC3 0.45 GFF2341 hypothetical protein 0.49 GFF157 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_18225 ATP-dependent RNA helicase HrpA 0.49 AO353_07950 glyceraldehyde-3-phosphate dehydrogenase — —
Pseudomonas lactucae CFBP13502 0.45 GEMAOFIL_04265 hypothetical protein 0.49 GEMAOFIL_05419 D-erythrose-4-phosphate dehydrogenase low > 93
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.49 Pf1N1B4_2398 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04280 ATP-dependent RNA helicase HrpA 0.49 AO356_13685 glyceraldehyde-3-phosphate dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2694 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.48 Pf6N2E2_4656 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.49 PFLU_RS28090 erythrose-4-phosphate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.45 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.49 PFLU_RS28090 erythrose-4-phosphate dehydrogenase — —
Pseudomonas simiae WCS417 0.44 PS417_20575 ATP-dependent helicase HrpA 0.49 PS417_26435 glyceraldehyde-3-phosphate dehydrogenase — —
Pseudomonas sp. RS175 0.44 PFR28_00739 hypothetical protein 0.49 PFR28_04187 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3831 ATP-dependent helicase HrpA 0.48 Psyr_4791 D-erythrose-4-phosphate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3831 ATP-dependent helicase HrpA 0.48 Psyr_4791 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas putida KT2440 0.44 PP_4546 ATP-dependent helicase HrpA 0.49 PP_4964 D-erythrose 4-phosphate dehydrogenase low > 96
Marinobacter adhaerens HP15 0.44 HP15_1863 RNA helicase, ATP-dependent DEAH box, HrpA type 0.53 HP15_2912 glyceraldehyde 3-phosphate dehydrogenase, type I — —
Pseudomonas sp. BP01 0.44 JOY50_RS01295 hrpA ATP-dependent RNA helicase HrpA 0.49 JOY50_RS09875 epd erythrose-4-phosphate dehydrogenase — —
Pseudomonas sp. S08-1 0.43 OH686_05730 RNA helicase HrpA 0.48 OH686_10765 erythrose-4-phosphate dehydrogenase — —
Pseudomonas segetis P6 0.43 MPMX49_03273 hypothetical protein 0.48 MPMX49_00654 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.43 Psest_1339 ATP-dependent helicase HrpA 0.48 Psest_0329 erythrose-4-phosphate dehydrogenase — —
Paraburkholderia graminis OAS925 0.40 ABIE53_002813 ATP-dependent helicase HrpA 0.49 ABIE53_003536 glyceraldehyde 3-phosphate dehydrogenase low > 113
Dechlorosoma suillum PS 0.40 Dsui_1373 ATP-dependent helicase HrpA 0.45 Dsui_1558 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS17315 ATP-dependent helicase 0.47 HSERO_RS07125 glyceraldehyde-3-phosphate dehydrogenase — —
Castellaniella sp019104865 MT123 0.39 ABCV34_RS02420 ATP-dependent RNA helicase HrpA 0.49 ABCV34_RS15455 type I glyceraldehyde-3-phosphate dehydrogenase — —
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_1779 ATP-dependent helicase HrpA 0.46 B158DRAFT_0511 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (EC 1.2.1.12) — —
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS19720 ATP-dependent RNA helicase HrpA 0.48 ABZR86_RS18615 type I glyceraldehyde-3-phosphate dehydrogenase low > 74
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS05625 ATP-dependent RNA helicase HrpA 0.50 QEN71_RS27005 type I glyceraldehyde-3-phosphate dehydrogenase low > 153
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS12980 ATP-dependent helicase 0.49 BPHYT_RS16835 glyceraldehyde-3-phosphate dehydrogenase low > 109
Acinetobacter radioresistens SK82 0.36 MPMX26_02008 hypothetical protein 0.44 MPMX26_01087 D-erythrose-4-phosphate dehydrogenase low > 36
Acinetobacter baumannii LAC-4 0.35 RR41_RS10175 ATP-dependent RNA helicase HrpA 0.44 RR41_RS10005 glyceraldehyde-3-phosphate dehydrogenase — —

Not shown: 16 genomes with orthologs for CSW01_06950 only; 7 genomes with orthologs for CSW01_02530 only