Conservation of cofitness between CSW01_09955 and CSW01_01005 in Vibrio cholerae E7946 ATCC 55056

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09955 L-asparaginase 1 1.0 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.49 6
Enterobacter sp. TBS_079 0.74 MPMX20_01849 L-asparaginase 1 0.64 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J low > 85
Klebsiella pneumoniae MKP103 0.73 KDGMDA_19250 asparaginase 0.64 KDGMDA_07435 Ribosomal RNA large subunit methyltransferase J low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF3482 L-asparaginase I, cytoplasmic (EC 3.5.1.1) 0.64 GFF515 Protein involved in catabolism of external DNA low > 78
Escherichia coli ECRC101 0.73 MCAODC_18605 ansA asparaginase 0.65 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 87
Escherichia coli BW25113 0.73 b1767 ansA cytoplasmic asparaginase I (NCBI) 0.65 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) low > 76
Escherichia coli BL21 0.73 ECD_01736 cytoplasmic L-asparaginase 1 0.65 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC102 0.73 NIAGMN_01260 ansA asparaginase 0.65 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13505_RS02800 asparaginase 0.61 PagCFBP13505_RS17840 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Enterobacter asburiae PDN3 0.73 EX28DRAFT_1768 L-asparaginase, type I 0.65 EX28DRAFT_4062 Protein involved in catabolism of external DNA low > 76
Escherichia coli ECRC98 0.73 JDDGAC_01380 ansA asparaginase 0.65 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 87
Escherichia coli ECOR27 0.73 NOLOHH_17320 ansA asparaginase 0.65 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 76
Escherichia coli ECOR38 0.73 HEPCGN_05180 ansA asparaginase 0.65 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 88
Escherichia coli ECRC99 0.73 KEDOAH_01305 ansA asparaginase 0.65 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Pantoea sp. MT58 0.73 IAI47_08965 asparaginase 0.61 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Serratia liquefaciens MT49 0.73 IAI46_14330 asparaginase 0.63 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Escherichia coli ECRC62 0.73 BNILDI_16105 ansA asparaginase 0.65 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 75
Escherichia coli ECRC100 0.73 OKFHMN_26805 ansA asparaginase 0.65 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_01965 L-asparaginase 1 0.65 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J low > 74
Klebsiella michiganensis M5al 0.73 BWI76_RS11580 L-asparaginase 1 0.64 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 92
Escherichia fergusonii Becca 0.73 EFB2_02227 L-asparaginase 1 0.65 EFB2_00316 Ribosomal RNA large subunit methyltransferase J low > 86
Rahnella sp. WP5 0.73 EX31_RS06300 asparaginase 0.65 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 89
Escherichia coli Nissle 1917 0.73 ECOLIN_RS09860 asparaginase 0.65 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Erwinia tracheiphila HP pepo 2.2 0.72 IJEDHG_22635 ansA asparaginase 0.62 IJEDHG_12575 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 61
Erwinia tracheiphila SCR3 0.72 LU632_RS12975 ansA asparaginase 0.62 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 73
Erwinia amylovora T8 0.72 OLJFJH_13240 asparaginase 0.63 OLJFJH_04555 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 58
Dickeya dadantii 3937 0.72 DDA3937_RS10285 asparaginase 0.65 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Pectobacterium carotovorum WPP14 0.71 HER17_RS11110 asparaginase 0.62 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Dickeya dianthicola ME23 0.71 DZA65_RS10770 asparaginase 0.65 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Dickeya dianthicola 67-19 0.71 HGI48_RS10295 asparaginase 0.65 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 71
Alteromonas macleodii MIT1002 0.71 MIT1002_01844 L-asparaginase 1 0.36 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J low > 70
Shewanella loihica PV-4 0.69 Shew_1940 ansA cytoplasmic asparaginase I (RefSeq) 0.48 Shew_3648 hypothetical protein (RefSeq) — —
Shewanella amazonensis SB2B 0.68 Sama_1722 ansA cytoplasmic asparaginase I (RefSeq) 0.51 Sama_3563 hypothetical protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.68 SO2421 ansA L-asparaginase I (NCBI ptt file) 0.48 SO4659 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.68 Shewana3_1963 ansA cytoplasmic asparaginase I (RefSeq) 0.49 Shewana3_4038 hypothetical protein (RefSeq) low > 73
Azospirillum sp. SherDot2 0.32 MPMX19_00090 L-asparaginase 1 0.46 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J low > 112
Pseudomonas sp. S08-1 0.29 OH686_13275 L-asparaginase I, cytoplasmic 0.40 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Pseudomonas stutzeri RCH2 0.28 Psest_4078 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 0.42 Psest_0408 Protein involved in catabolism of external DNA low > 67
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_09960 L-asparaginase (EC 3.5.1.1) (from data) 0.38 AO353_12840 lactate dehydrogenase low > 101
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_2023 L-asparaginase (EC 3.5.1.1) (from data) 0.38 Pf1N1B4_1481 Protein involved in catabolism of external DNA low > 87
Pseudomonas simiae WCS417 0.27 PS417_28140 asparaginase 0.38 PS417_02200 lactate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_740 L-asparaginase (EC 3.5.1.1) (from data) 0.38 PfGW456L13_219 Protein involved in catabolism of external DNA low > 87
Pseudomonas segetis P6 0.26 MPMX49_00165 L-asparaginase 1 0.41 MPMX49_04216 Ribosomal RNA large subunit methyltransferase J low > 75
Pseudomonas sp. DMC3 0.26 GFF490 L-asparaginase 1 0.40 GFF3149 Ribosomal RNA large subunit methyltransferase J low > 89
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_4087 L-asparaginase (EC 3.5.1.1) (from data) 0.38 Pf6N2E2_3679 Protein involved in catabolism of external DNA low > 103
Pseudomonas orientalis W4I3 0.26 QF045_RS02500 asparaginase 0.38 QF045_RS05260 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 93
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_11100 L-asparaginase (EC 3.5.1.1) (from data) 0.38 AO356_08990 lactate dehydrogenase low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_5053 asparaginase 0.38 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_5053 asparaginase 0.38 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas lactucae CFBP13502 0.26 GEMAOFIL_00094 L-asparaginase 1 0.39 GEMAOFIL_00676 Ribosomal RNA large subunit methyltransferase J low > 96
Pseudomonas sp. RS175 0.25 PFR28_04501 L-asparaginase 1 0.39 PFR28_05056 Ribosomal RNA large subunit methyltransferase J low > 88
Pseudomonas putida KT2440 0.25 PP_0495 type 1 L-asparaginase 0.44 PP_4945 23S rRNA m(6)A2030 methyltransferase low > 96
Pseudomonas aeruginosa PA14 0.25 IKLFDK_11055 asparaginase 0.43 IKLFDK_28440 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 98
Pseudomonas aeruginosa PUPa3 0.25 DQ20_RS39875 asparaginase 0.43 DQ20_RS51160 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 101
Pseudomonas aeruginosa MRSN321 0.25 DY961_RS17645 asparaginase 0.43 DY961_RS10910 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 100
Pseudomonas sp. SVBP6 0.25 COO64_RS15980 asparaginase 0.42 COO64_RS17660 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 93
Pseudomonas fluorescens SBW25 0.24 PFLU_RS29825 asparaginase 0.38 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas sp. BP01 0.24 JOY50_RS20220 asparaginase 0.41 JOY50_RS09970 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 84
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS29825 asparaginase 0.38 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Paraburkholderia graminis OAS925 0.13 ABIE53_001995 L-asparaginase 0.41 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase low > 113
Burkholderia phytofirmans PsJN 0.12 BPHYT_RS08815 L-asparaginase (EC 3.5.1.1) (from data) 0.40 BPHYT_RS06880 competence protein ComJ low > 109
Acinetobacter baumannii LAC-4 0.12 RR41_RS16855 asparaginase 0.35 RR41_RS02490 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 55
Acinetobacter radioresistens SK82 0.12 MPMX26_00353 L-asparaginase 1 0.34 MPMX26_02660 Ribosomal RNA large subunit methyltransferase J low > 36
Ralstonia solanacearum UW163 0.11 UW163_RS13215 asparaginase 0.41 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Ralstonia solanacearum IBSBF1503 0.11 RALBFv3_RS15770 asparaginase 0.41 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Ralstonia sp. UNC404CL21Col 0.11 ABZR87_RS11340 asparaginase 0.42 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Ralstonia solanacearum PSI07 0.11 RPSI07_RS17595 asparaginase 0.41 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 81
Ralstonia solanacearum GMI1000 0.11 RS_RS06550 asparaginase 0.40 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Variovorax sp. SCN45 0.11 GFF356 L-asparaginase (EC 3.5.1.1) 0.31 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) low > 127
Paraburkholderia sabiae LMG 24235 0.11 QEN71_RS22565 asparaginase 0.41 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 153
Agrobacterium fabrum C58 0.10 Atu3791 L-asparaginase 0.43 Atu1135 hypothetical protein low > 89
Cupriavidus basilensis FW507-4G11 0.10 RR42_RS12610 glutaminase 0.40 RR42_RS09005 competence protein ComJ low > 128
Acidovorax sp. GW101-3H11 0.09 Ac3H11_2391 L-asparaginase (EC 3.5.1.1) 0.31 Ac3H11_3047 Protein involved in catabolism of external DNA low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.08 GFF4502 L-asparaginase (EC 3.5.1.1) 0.33 GFF1683 Protein involved in catabolism of external DNA low > 90

Not shown: 16 genomes with orthologs for CSW01_09955 only; 25 genomes with orthologs for CSW01_01005 only