| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Caulobacter crescentus NA1000 | 1.0 | CCNA_01288 | | multidrug resistance transporter, Bcr family | 1.0 | CCNA_01243 | | ATP-dependent helicase hrpB | 0.39 | 9 |
| Caulobacter crescentus NA1000 Δfur | 1.00 | CCNA_01288 | | multidrug resistance transporter, Bcr family | 1.00 | CCNA_01243 | | ATP-dependent helicase hrpB | low | > 67 |
| Pseudomonas fluorescens SBW25-INTG | 0.33 | PFLU_RS03255 | | multidrug effflux MFS transporter | 0.41 | PFLU_RS26480 | | ATP-dependent helicase HrpB | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.33 | PFLU_RS03255 | | multidrug effflux MFS transporter | 0.41 | PFLU_RS26480 | | ATP-dependent helicase HrpB | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.33 | Psyr_0657 | | Drug resistance transporter Bcr/CflA subfamily | 0.42 | Psyr_4320 | | ATP-dependent helicase HrpB | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.33 | Psyr_0657 | | Drug resistance transporter Bcr/CflA subfamily | 0.42 | Psyr_4320 | | ATP-dependent helicase HrpB | low | > 86 |
| Pseudomonas simiae WCS417 | 0.33 | PS417_03175 | | major facilitator transporter | 0.42 | PS417_24550 | | ATP-dependent helicase | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.33 | PfGW456L13_21 | | Multidrug resistance transporter, Bcr/CflA family | 0.41 | PfGW456L13_1395 | | ATP-dependent helicase HrpB | low | > 87 |
| Pseudomonas putida KT2440 | 0.33 | PP_0589 | | Bcr/CflA family multidrug resistance transporter | 0.40 | PP_4772 | | ATP-dependent helicase HrpB | low | > 96 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.32 | CA264_01830 | | Bcr/CflA family drug resistance efflux transporter | 0.40 | CA264_03600 | | ATP-dependent helicase HrpB | low | > 74 |
| Pseudomonas sp. S08-1 | 0.32 | OH686_07365 | | Multidrug resistance transporter, Bcr/CflA family | 0.43 | OH686_08800 | | ATP-dependent helicase HrpB | low | > 80 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.32 | Echvi_3352 | | drug resistance transporter, Bcr/CflA subfamily | 0.38 | Echvi_3452 | | ATP-dependent helicase HrpB | low | > 79 |
| Pseudomonas fluorescens FW300-N2E3 | 0.32 | AO353_06140 | | MFS transporter | 0.41 | AO353_06300 | | ATP-dependent helicase | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.31 | Pf1N1B4_1259 | | Multidrug resistance transporter, Bcr/CflA family | 0.41 | Pf1N1B4_2728 | | ATP-dependent helicase HrpB | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_08050 | | MFS transporter | 0.41 | AO356_15485 | | ATP-dependent helicase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_3484 | | Multidrug resistance transporter, Bcr/CflA family | 0.42 | Pf6N2E2_5038 | | ATP-dependent helicase HrpB | low | > 103 |
| Pseudomonas sp. RS175 | 0.31 | PFR28_05247 | | Bicyclomycin resistance protein | 0.41 | PFR28_03833 | | ATP-dependent RNA helicase HrpB | low | > 88 |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_06022 | | Bicyclomycin resistance protein | 0.43 | MPMX19_00095 | | ATP-dependent RNA helicase HrpB | low | > 112 |
| Pseudomonas stutzeri RCH2 | 0.31 | Psest_0741 | | drug resistance transporter, Bcr/CflA subfamily | 0.43 | Psest_0629 | | ATP-dependent helicase HrpB | low | > 67 |
| Marinobacter adhaerens HP15 | 0.31 | HP15_26 | | drug resistance transporter, Bcr/CflA family protein | 0.42 | HP15_3782 | | RNA helicase, ATP-dependent DEAH box, HrpB type | low | > 73 |
| Dyella japonica UNC79MFTsu3.2 | 0.28 | ABZR86_RS00225 | | multidrug effflux MFS transporter | 0.35 | ABZR86_RS13060 | | ATP-dependent helicase HrpB | low | > 74 |
| Magnetospirillum magneticum AMB-1 | 0.26 | AMB_RS01475 | | MFS transporter | 0.42 | AMB_RS06395 | | ATP-dependent helicase HrpB | — | — |
| Dickeya dadantii 3937 | 0.26 | DDA3937_RS01640 | | multidrug effflux MFS transporter | 0.34 | DDA3937_RS15920 | | ATP-dependent helicase HrpB | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.25 | HER17_RS13830 | | multidrug effflux MFS transporter | 0.35 | HER17_RS05595 | | ATP-dependent helicase HrpB | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.24 | CSW01_08215 | | Bcr/CflA family drug resistance efflux transporter | 0.36 | CSW01_03170 | | ATP-dependent helicase HrpB | low | > 62 |
| Klebsiella michiganensis M5al | 0.24 | BWI76_RS27705 | | Bcr/CflA family drug resistance efflux transporter | 0.36 | BWI76_RS05030 | | ATP-dependent helicase | 0.24 | 11 |
| Dickeya dianthicola 67-19 | 0.23 | HGI48_RS09205 | | Bcr/CflA family multidrug efflux MFS transporter | 0.35 | HGI48_RS16035 | | ATP-dependent helicase HrpB | low | > 71 |
| Escherichia coli ECRC100 | 0.23 | OKFHMN_02485 | araJ | Bcr/CflA family drug resistance efflux transporter | 0.38 | OKFHMN_10330 | hrpB | ATP-dependent helicase HrpB | low | > 80 |
| Escherichia coli ECRC98 | 0.23 | JDDGAC_05030 | araJ | Bcr/CflA family drug resistance efflux transporter | 0.38 | JDDGAC_13925 | hrpB | ATP-dependent helicase HrpB | low | > 86 |
| Escherichia coli ECRC101 | 0.23 | MCAODC_15785 | araJ | Bcr/CflA family drug resistance efflux transporter | 0.38 | MCAODC_00845 | hrpB | ATP-dependent helicase HrpB | low | > 87 |
| Escherichia coli ECRC102 | 0.23 | NIAGMN_26655 | araJ | Bcr/CflA family drug resistance efflux transporter | 0.38 | NIAGMN_08180 | hrpB | ATP-dependent helicase HrpB | — | — |
| Escherichia coli ECRC99 | 0.23 | KEDOAH_26290 | araJ | Bcr/CflA family drug resistance efflux transporter | 0.38 | KEDOAH_17825 | hrpB | ATP-dependent helicase HrpB | — | — |
| Dickeya dianthicola ME23 | 0.22 | DZA65_RS09505 | | Bcr/CflA family multidrug efflux MFS transporter | 0.34 | DZA65_RS17120 | | ATP-dependent helicase HrpB | low | > 75 |
| Escherichia coli ECOR38 | 0.22 | HEPCGN_25715 | araJ | Bcr/CflA family drug resistance efflux transporter | 0.37 | HEPCGN_08280 | hrpB | ATP-dependent helicase HrpB | low | > 87 |
| Escherichia fergusonii Becca | 0.22 | EFB2_02631 | | Bicyclomycin resistance protein | 0.38 | EFB2_03896 | | ATP-dependent RNA helicase HrpB | low | > 86 |
| Escherichia coli Nissle 1917 | 0.22 | ECOLIN_RS07800 | | multidrug effflux MFS transporter | 0.38 | ECOLIN_RS00830 | | ATP-dependent helicase HrpB | low | > 55 |
| Rahnella sp. WP5 | 0.22 | EX31_RS19190 | | Bcr/CflA family multidrug efflux MFS transporter | 0.38 | EX31_RS03235 | | ATP-dependent helicase HrpB | low | > 89 |
| Enterobacter sp. TBS_079 | 0.22 | MPMX20_03148 | | Bicyclomycin resistance protein | 0.36 | MPMX20_00834 | | ATP-dependent RNA helicase HrpB | low | > 85 |
| Rhizobium sp. OAE497 | 0.22 | ABIE40_RS09565 | | multidrug effflux MFS transporter | 0.47 | ABIE40_RS19515 | | ATP-dependent helicase HrpB | low | > 107 |
| Bosea sp. OAE506 | 0.22 | ABIE41_RS02750 | | multidrug effflux MFS transporter | 0.53 | ABIE41_RS03925 | | ATP-dependent helicase HrpB | low | > 77 |
| Serratia liquefaciens MT49 | 0.21 | IAI46_17340 | | Bcr/CflA family multidrug efflux MFS transporter | 0.35 | IAI46_21195 | | ATP-dependent helicase HrpB | low | > 86 |
| Pantoea sp. MT58 | 0.21 | IAI47_06590 | | Bcr/CflA family multidrug efflux MFS transporter | 0.34 | IAI47_15620 | | ATP-dependent helicase HrpB | low | > 76 |
| Enterobacter asburiae PDN3 | 0.21 | EX28DRAFT_0379 | | drug resistance transporter, Bcr/CflA subfamily | 0.38 | EX28DRAFT_3737 | | ATP-dependent helicase HrpB | low | > 76 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.20 | A4249_RS14555 | | multidrug effflux MFS transporter | 0.57 | A4249_RS05425 | | ATP-dependent helicase HrpB | low | > 48 |
| Rhodopseudomonas palustris CGA009 | 0.20 | TX73_018225 | | multidrug effflux MFS transporter | 0.53 | TX73_002770 | | ATP-dependent helicase HrpB | low | > 86 |
| Escherichia coli BW25113 | 0.20 | b2182 | bcr | bicyclomycin/multidrug efflux system (NCBI) | 0.37 | b0148 | hrpB | helicase, ATP-dependent (VIMSS) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.20 | OHPLBJKB_01527 | | Bicyclomycin resistance protein | 0.37 | OHPLBJKB_03514 | | hypothetical protein | 0.42 | 19 |
| Escherichia coli BL21 | 0.20 | ECD_02112 | | bicyclomycin/cysteine/sulfonamide efflux transporter | 0.37 | ECD_00147 | | putative ATP-dependent helicase | low | > 61 |
| Escherichia coli ECRC62 | 0.20 | BNILDI_13860 | bcr | multidrug efflux MFS transporter Bcr | 0.37 | BNILDI_08995 | hrpB | ATP-dependent helicase HrpB | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.20 | GFF3754 | | MFS family multidrug transport protein, bicyclomycin resistance protein | 0.36 | GFF84 | | ATP-dependent helicase HrpB | low | > 78 |
| Escherichia coli ECOR27 | 0.20 | NOLOHH_14940 | bcr | multidrug efflux MFS transporter Bcr | 0.37 | NOLOHH_02675 | hrpB | ATP-dependent helicase HrpB | low | > 75 |
| Shewanella loihica PV-4 | 0.19 | Shew_3588 | | Bcr/CflA subfamily drug resistance transporter (RefSeq) | 0.34 | Shew_3124 | | ATP-dependent helicase HrpB (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.19 | Sama_3448 | | drug resistance transporter, Bcr/CflA family protein (RefSeq) | 0.33 | Sama_2972 | | ATP-dependent helicase HrpB (RefSeq) | low | > 62 |
| Phaeobacter inhibens DSM 17395 | 0.18 | PGA1_c21620 | | putative bicyclomycin resistance protein | 0.36 | PGA1_c24190 | | ATP-dependent RNA helicase HrpB | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.18 | Dshi_0717 | | drug resistance transporter, Bcr/CflA subfamily (RefSeq) | 0.38 | Dshi_2580 | | ATP-dependent helicase HrpB (RefSeq) | low | > 64 |
| Rhodospirillum rubrum S1H | 0.18 | Rru_A2971 | | Drug resistance transporter Bcr/CflA subfamily (NCBI) | 0.38 | Rru_A2365 | | ATP-dependent helicase HrpB (NCBI) | low | > 58 |
| Shewanella sp. ANA-3 | 0.18 | Shewana3_2268 | | Bcr/CflA subfamily drug resistance transporter (RefSeq) | 0.37 | Shewana3_0622 | | ATP-dependent helicase HrpB (RefSeq) | low | > 73 |
| Sinorhizobium meliloti 1021 | 0.17 | SMc00536 | | transporter | 0.47 | SMc02586 | | ATP-dependent helicase | low | > 103 |
| Shewanella oneidensis MR-1 | 0.17 | SO2280 | | bicyclomycin resistance protein (NCBI ptt file) | 0.37 | SO0632 | hrpB | ATP-dependent helicase HrpB (NCBI ptt file) | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.16 | MIT1002_04046 | | Sulfonamide resistance protein | 0.29 | MIT1002_00406 | | ATP-dependent RNA helicase HrpB | low | > 70 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.16 | Xcc-8004.3876.1 | | MFS transporter | 0.36 | Xcc-8004.354.1 | | macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. | low | > 74 |
| Agrobacterium fabrum C58 | 0.16 | Atu2666 | | MFS permease | 0.48 | Atu0052 | | helicase | low | > 89 |
| Sphingomonas koreensis DSMZ 15582 | 0.14 | Ga0059261_2714 | | drug resistance transporter, Bcr/CflA subfamily | 0.42 | Ga0059261_2125 | | ATP-dependent helicase HrpB | low | > 68 |
Not shown: 23 genomes with orthologs for CCNA_01288 only; 6 genomes with orthologs for CCNA_01243 only