Conservation of cofitness between CA265_RS10420 and CA265_RS18435 in Pedobacter sp. GW460-11-11-14-LB5

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pedobacter sp. GW460-11-11-14-LB5 1.0 CA265_RS10420 hydroxyacid dehydrogenase 1.0 CA265_RS18435 peptide chain release factor 3 0.41 5
Ralstonia solanacearum GMI1000 0.54 RS_RS15730 2-hydroxyacid dehydrogenase 0.48 RS_RS25080 peptide chain release factor 3 low > 80
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS03505 2-hydroxyacid dehydrogenase 0.48 ABZR87_RS23485 peptide chain release factor 3 low > 80
Paraburkholderia graminis OAS925 0.54 ABIE53_006385 D-lactate dehydrogenase 0.47 ABIE53_004717 peptide chain release factor 3 low > 113
Shewanella loihica PV-4 0.54 Shew_0787 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) 0.47 Shew_2820 prfC peptide chain release factor 3 (RefSeq) low > 60
Pseudomonas stutzeri RCH2 0.53 Psest_4064 Lactate dehydrogenase and related dehydrogenases 0.46 Psest_3351 peptide chain release factor 3 low > 67
Ralstonia solanacearum UW163 0.53 UW163_RS05795 2-hydroxyacid dehydrogenase 0.48 UW163_RS16595 peptide chain release factor 3 — —
Dickeya dadantii 3937 0.53 DDA3937_RS12295 2-hydroxyacid dehydrogenase 0.48 DDA3937_RS02445 peptide chain release factor 3 low > 74
Shewanella sp. ANA-3 0.53 Shewana3_3319 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) 0.47 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) low > 73
Ralstonia solanacearum IBSBF1503 0.53 RALBFv3_RS07830 2-hydroxyacid dehydrogenase 0.48 RALBFv3_RS23345 peptide chain release factor 3 low > 76
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_01850 D-lactate dehydrogenase 0.47 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) — —
Ralstonia solanacearum PSI07 0.53 RPSI07_RS09445 2-hydroxyacid dehydrogenase 0.48 RPSI07_RS07810 peptide chain release factor 3 low > 81
Shewanella amazonensis SB2B 0.52 Sama_0612 D-lactate dehydrogenase (RefSeq) 0.46 Sama_0968 prfC peptide chain release factor 3 (RefSeq) low > 62
Rahnella sp. WP5 0.52 EX31_RS06470 2-hydroxyacid dehydrogenase 0.48 EX31_RS04095 peptide chain release factor 3 — —
Synechococcus elongatus PCC 7942 0.52 Synpcc7942_1347 ldhA 2-hydroxyacid dehydrogenase-like 0.42 Synpcc7942_2365 prfC peptide chain release factor 3 low > 38
Enterobacter asburiae PDN3 0.52 EX28DRAFT_1435 Lactate dehydrogenase and related dehydrogenases 0.48 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Enterobacter sp. TBS_079 0.52 MPMX20_02132 D-lactate dehydrogenase 0.48 MPMX20_00673 Peptide chain release factor RF3 low > 85
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_02740 hydroxyacid dehydrogenase 0.46 AO353_05420 peptide chain release factor 3 low > 101
Serratia liquefaciens MT49 0.52 IAI46_13355 2-hydroxyacid dehydrogenase 0.47 IAI46_02875 peptide chain release factor 3 low > 86
Escherichia coli BL21 0.51 ECD_01352 fermentative D-lactate dehydrogenase, NAD-dependent 0.49 ECD_04250 peptide chain release factor RF-3 0.45 45
Escherichia coli ECRC101 0.51 MCAODC_16140 ldhA D-lactate dehydrogenase 0.49 MCAODC_01795 prfC peptide chain release factor 3 low > 87
Escherichia coli ECOR38 0.51 HEPCGN_26050 ldhA D-lactate dehydrogenase 0.49 HEPCGN_09285 prfC peptide chain release factor 3 low > 87
Escherichia coli Nissle 1917 0.51 ECOLIN_RS08110 D-lactate dehydrogenase 0.49 ECOLIN_RS25110 peptide chain release factor 3 low > 55
Escherichia coli ECRC98 0.51 JDDGAC_04285 ldhA D-lactate dehydrogenase 0.49 JDDGAC_14875 prfC peptide chain release factor 3 low > 86
Escherichia coli BW25113 0.51 b1380 ldhA D-lactate dehydrogenase (NCBI) 0.49 b4375 prfC peptide chain release factor 3 (NCBI) low > 76
Escherichia coli ECRC100 0.51 OKFHMN_01795 ldhA D-lactate dehydrogenase 0.49 OKFHMN_11280 prfC peptide chain release factor 3 low > 80
Escherichia coli ECRC62 0.51 BNILDI_17985 ldhA D-lactate dehydrogenase 0.49 BNILDI_08000 prfC peptide chain release factor 3 0.61 67
Escherichia coli ECRC102 0.51 NIAGMN_25930 ldhA D-lactate dehydrogenase 0.49 NIAGMN_09130 prfC peptide chain release factor 3 — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_02331 D-lactate dehydrogenase 0.49 OHPLBJKB_03687 Peptide chain release factor RF3 low > 73
Escherichia coli ECRC99 0.51 KEDOAH_26640 ldhA D-lactate dehydrogenase 0.49 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia fergusonii Becca 0.51 EFB2_02576 D-lactate dehydrogenase 0.49 EFB2_04072 Peptide chain release factor RF3 low > 86
Escherichia coli ECOR27 0.51 NOLOHH_19530 ldhA D-lactate dehydrogenase 0.49 NOLOHH_03600 prfC peptide chain release factor 3 low > 75
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_5719 D-lactate dehydrogenase (EC 1.1.1.28) 0.45 Pf6N2E2_3327 Peptide chain release factor 3 — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF2638 D-lactate dehydrogenase (EC 1.1.1.28) 0.48 GFF1035 Peptide chain release factor 3 low > 78
Pseudomonas putida KT2440 0.51 PP_1649 D-lactate dehydrogenase 0.46 PP_0872 Peptide chain release factor 3 0.16 4
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_19040 hydroxyacid dehydrogenase 0.46 AO356_07285 peptide chain release factor 3 — —
Pseudomonas sp. RS175 0.51 PFR28_03228 D-lactate dehydrogenase 0.46 PFR28_00118 Peptide chain release factor RF3 — —
Klebsiella michiganensis M5al 0.50 BWI76_RS12790 lactate dehydrogenase 0.48 BWI76_RS04100 peptide chain release factor 3 low > 92
Pseudomonas simiae WCS417 0.50 PS417_16375 2-hydroxyacid dehydrogenase 0.46 PS417_04030 peptide chain release factor 3 — —
Pseudomonas fluorescens SBW25 0.50 PFLU_RS18415 2-hydroxyacid dehydrogenase 0.46 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25-INTG 0.50 PFLU_RS18415 2-hydroxyacid dehydrogenase 0.46 PFLU_RS04070 peptide chain release factor 3 low > 109
Pantoea sp. MT58 0.50 IAI47_09495 2-hydroxyacid dehydrogenase 0.48 IAI47_03375 peptide chain release factor 3 low > 76
Alteromonas macleodii MIT1002 0.50 MIT1002_01974 D-lactate dehydrogenase 0.48 MIT1002_01192 Peptide chain release factor 3 low > 70
Agrobacterium fabrum C58 0.49 Atu3870 D-lactate dehydrogenase 0.44 Atu0315 peptide chain release factor 3 — —
Pectobacterium carotovorum WPP14 0.49 HER17_RS09630 2-hydroxyacid dehydrogenase 0.48 HER17_RS19065 peptide chain release factor 3 low > 75
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS03835 D-lactate dehydrogenase 0.47 BPHYT_RS34275 peptide chain release factor 3 low > 109
Pseudomonas fluorescens GW456-L13 0.49 PfGW456L13_2028 D-lactate dehydrogenase (EC 1.1.1.28) 0.46 PfGW456L13_5060 Peptide chain release factor 3 low > 87
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_14945 2-hydroxyacid dehydrogenase 0.46 CSW01_03470 peptide chain release factor 3 low > 62
Paraburkholderia sabiae LMG 24235 0.48 QEN71_RS26130 2-hydroxyacid dehydrogenase 0.47 QEN71_RS17200 peptide chain release factor 3 low > 153
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_0219 Lactate dehydrogenase and related dehydrogenases 0.43 Ga0059261_2044 peptide chain release factor 3 low > 68
Pseudomonas sp. S08-1 0.47 OH686_18940 D-lactate dehydrogenase 0.46 OH686_08765 peptide chain release factor 3 — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.46 Echvi_3936 Lactate dehydrogenase and related dehydrogenases 0.67 Echvi_0584 peptide chain release factor 3 low > 79
Bacteroides stercoris CC31F 0.46 HMPREF1181_RS11170 2-hydroxyacid dehydrogenase 0.57 HMPREF1181_RS05585 peptide chain release factor 3 low > 56
Parabacteroides merdae CL09T00C40 0.46 HMPREF1078_RS01675 2-hydroxyacid dehydrogenase 0.64 HMPREF1078_RS04145 peptide chain release factor 3 low > 61
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS12550 D-lactate dehydrogenase 0.50 HSERO_RS14640 peptide chain release factor 3 low > 78
Bacteroides thetaiotaomicron VPI-5482 0.44 BT1575 putative dehydrogenase (NCBI ptt file) 0.57 BT1729 peptide chain release factor 3 (RF-3) (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.44 BACOVA_04316 4-phosphoerythronate dehydrogenase 0.57 BACOVA_04458 peptide chain release factor 3 low > 94
Phocaeicola vulgatus CL09T03C04 0.43 HMPREF1058_RS16545 2-hydroxyacid dehydrogenase 0.59 HMPREF1058_RS07935 peptide chain release factor 3 — —
Phocaeicola dorei CL03T12C01 0.42 ABI39_RS12465 2-hydroxyacid dehydrogenase 0.59 ABI39_RS00385 peptide chain release factor 3 — —

Not shown: 5 genomes with orthologs for CA265_RS10420 only; 35 genomes with orthologs for CA265_RS18435 only