Conservation of cofitness between BPHYT_RS04920 and BPHYT_RS16975 in Burkholderia phytofirmans PsJN

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS04920 aspartate 1-decarboxylase 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 0.43 16
Paraburkholderia graminis OAS925 0.99 ABIE53_001259 aspartate 1-decarboxylase 0.93 ABIE53_003560 shikimate dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.98 H281DRAFT_00149 L-aspartate 1-decarboxylase 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) — —
Paraburkholderia sabiae LMG 24235 0.94 QEN71_RS25070 aspartate 1-decarboxylase 0.81 QEN71_RS27130 shikimate dehydrogenase low > 153
Variovorax sp. OAS795 0.72 ABID97_RS28990 aspartate 1-decarboxylase 0.34 ABID97_RS06300 shikimate dehydrogenase — —
Acidovorax sp. GW101-3H11 0.69 Ac3H11_3827 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.69 32
Methylophilus sp. DMC18 0.64 GFF825 Aspartate 1-decarboxylase 0.46 GFF2019 Shikimate dehydrogenase (NADP(+)) — —
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS03485 aspartate decarboxylase 0.51 HSERO_RS01990 shikimate 5-dehydrogenase — —
Ralstonia solanacearum PSI07 0.58 RPSI07_RS11525 aspartate 1-decarboxylase 0.55 RPSI07_RS11300 shikimate dehydrogenase low > 81
Ralstonia solanacearum UW163 0.58 UW163_RS07850 aspartate 1-decarboxylase 0.54 UW163_RS07680 shikimate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.58 RALBFv3_RS05775 aspartate 1-decarboxylase 0.54 RALBFv3_RS05945 shikimate dehydrogenase low > 76
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS01345 aspartate 1-decarboxylase 0.54 ABZR87_RS01605 shikimate dehydrogenase — —
Lysobacter sp. OAE881 0.57 ABIE51_RS08035 aspartate 1-decarboxylase 0.29 ABIE51_RS01815 shikimate dehydrogenase — —
Escherichia coli ECOR27 0.57 NOLOHH_02760 panD aspartate 1-decarboxylase 0.39 NOLOHH_09355 aroE shikimate dehydrogenase 0.63 47
Escherichia coli ECRC99 0.57 KEDOAH_17740 panD aspartate 1-decarboxylase 0.38 KEDOAH_10585 aroE shikimate dehydrogenase — —
Ralstonia solanacearum GMI1000 0.57 RS_RS13665 aspartate 1-decarboxylase 0.54 RS_RS13890 shikimate dehydrogenase — —
Escherichia coli ECRC101 0.57 MCAODC_00930 panD aspartate 1-decarboxylase 0.38 MCAODC_08085 aroE shikimate dehydrogenase low > 87
Escherichia coli ECOR38 0.57 HEPCGN_08395 panD aspartate 1-decarboxylase 0.39 HEPCGN_16385 aroE shikimate dehydrogenase low > 87
Escherichia coli Nissle 1917 0.57 ECOLIN_RS00725 aspartate 1-decarboxylase 0.38 ECOLIN_RS18840 shikimate dehydrogenase low > 55
Escherichia coli ECRC62 0.57 BNILDI_08910 panD aspartate 1-decarboxylase 0.39 BNILDI_02165 aroE shikimate dehydrogenase low > 75
Escherichia coli ECRC102 0.57 NIAGMN_08265 panD aspartate 1-decarboxylase 0.38 NIAGMN_15325 aroE shikimate dehydrogenase — —
Escherichia coli ECRC100 0.57 OKFHMN_10415 panD aspartate 1-decarboxylase 0.38 OKFHMN_17565 aroE shikimate dehydrogenase low > 80
Escherichia coli BW25113 0.57 b0131 panD aspartate 1-decarboxylase precursor (NCBI) 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.30 58
Escherichia fergusonii Becca 0.57 EFB2_03914 Aspartate 1-decarboxylase 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_03530 Aspartate 1-decarboxylase 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) low > 73
Escherichia coli ECRC98 0.57 JDDGAC_14010 panD aspartate 1-decarboxylase 0.38 JDDGAC_21185 aroE shikimate dehydrogenase low > 86
Echinicola vietnamensis KMM 6221, DSM 17526 0.57 Echvi_1528 L-aspartate-alpha-decarboxylase 0.14 Echvi_1145 Shikimate 5-dehydrogenase — —
Escherichia coli BL21 0.57 ECD_00130 aspartate 1-decarboxylase 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding low > 61
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.3050.1 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Enterobacter sp. TBS_079 0.55 MPMX20_00825 Aspartate 1-decarboxylase 0.36 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) low > 85
Enterobacter asburiae PDN3 0.55 EX28DRAFT_3728 L-aspartate 1-decarboxylase (EC 4.1.1.11) 0.37 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF93 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.36 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 78
Klebsiella michiganensis M5al 0.54 BWI76_RS04985 aspartate 1-decarboxylase 0.36 BWI76_RS25645 shikimate dehydrogenase 0.22 68
Erwinia amylovora T8 0.51 OLJFJH_00795 aspartate 1-decarboxylase 0.37 OLJFJH_03685 shikimate dehydrogenase — —
Erwinia tracheiphila SCR3 0.51 LU632_RS20110 panD aspartate 1-decarboxylase 0.37 LU632_RS22445 aroE shikimate dehydrogenase low > 74
Pontibacter actiniarum KMM 6156, DSM 19842 0.51 CA264_17620 aspartate 1-decarboxylase 0.14 CA264_19075 shikimate dehydrogenase — —
Acinetobacter radioresistens SK82 0.51 MPMX26_00721 Aspartate 1-decarboxylase 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) low > 36
Serratia liquefaciens MT49 0.50 IAI46_21250 aspartate 1-decarboxylase 0.37 IAI46_23240 shikimate dehydrogenase low > 86
Pectobacterium carotovorum WPP14 0.50 HER17_RS05550 aspartate 1-decarboxylase 0.33 HER17_RS02250 shikimate dehydrogenase low > 75
Pedobacter sp. GW460-11-11-14-LB5 0.49 CA265_RS22705 aspartate 1-decarboxylase 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Parabacteroides merdae CL09T00C40 0.49 HMPREF1078_RS14685 aspartate 1-decarboxylase 0.15 HMPREF1078_RS14200 shikimate dehydrogenase low > 61
Pseudomonas sp. RS175 0.49 PFR28_03723 Aspartate 1-decarboxylase 0.46 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Pantoea sp. MT58 0.49 IAI47_15665 aspartate 1-decarboxylase 0.40 IAI47_02315 shikimate dehydrogenase — —
Pseudomonas aeruginosa PA14 0.49 IKLFDK_29945 aspartate 1-decarboxylase 0.43 IKLFDK_25435 shikimate dehydrogenase — —
Dickeya dianthicola ME23 0.49 DZA65_RS17165 aspartate 1-decarboxylase 0.35 DZA65_RS20315 shikimate dehydrogenase — —
Dickeya dadantii 3937 0.49 DDA3937_RS15965 aspartate 1-decarboxylase 0.35 DDA3937_RS19100 shikimate dehydrogenase — —
Dickeya dianthicola 67-19 0.49 HGI48_RS16080 aspartate 1-decarboxylase 0.35 HGI48_RS19190 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.49 AO353_14375 aspartate decarboxylase 0.44 AO353_10670 shikimate dehydrogenase low > 101
Pseudomonas fluorescens GW456-L13 0.49 PfGW456L13_1519 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.45 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 87
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_5151 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.45 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens FW300-N1B4 0.49 Pf1N1B4_2852 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.45 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 87
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS20500 aspartate 1-decarboxylase 0.15 ABZR88_RS20055 shikimate dehydrogenase — —
Mycobacterium tuberculosis H37Rv 0.48 Rv3601c Probable aspartate 1-decarboxylase precursor PanD (aspartate alpha-decarboxylase) 0.11 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) — —
Pseudomonas stutzeri RCH2 0.47 Psest_0994 L-aspartate-alpha-decarboxylase 0.44 Psest_0029 shikimate 5-dehydrogenase — —
Pseudomonas sp. S08-1 0.46 OH686_17235 aspartate 1-decarboxylase 0.47 OH686_12485 Shikimate 5-dehydrogenase I alpha low > 80
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS18265 aspartate 1-decarboxylase 0.14 HMPREF1058_RS16750 shikimate dehydrogenase 0.65 24
Phocaeicola dorei CL03T12C01 0.46 ABI39_RS14560 aspartate 1-decarboxylase 0.14 ABI39_RS12665 shikimate dehydrogenase 0.60 20
Bacteroides thetaiotaomicron VPI-5482 0.45 BT4309 aspartate 1-decarboxylase precursor (NCBI ptt file) 0.13 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_02380 aspartate 1-decarboxylase 0.17 CCNA_00003 shikimate 5-dehydrogenase low > 67
Caulobacter crescentus NA1000 0.44 CCNA_02380 aspartate 1-decarboxylase 0.17 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Bacteroides ovatus ATCC 8483 0.44 BACOVA_05109 aspartate 1-decarboxylase 0.13 BACOVA_05065 putative shikimate dehydrogenase — —
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS06085 aspartate 1-decarboxylase 0.15 HMPREF1181_RS06320 shikimate dehydrogenase 0.69 53
Castellaniella sp019104865 MT123 0.36 ABCV34_RS05880 aspartate 1-decarboxylase 0.44 ABCV34_RS11630 shikimate dehydrogenase — —
Azospirillum brasilense Sp245 0.33 AZOBR_RS18370 aspartate decarboxylase 0.18 AZOBR_RS01765 shikimate 5-dehydrogenase — —

Not shown: 10 genomes with orthologs for BPHYT_RS04920 only; 35 genomes with orthologs for BPHYT_RS16975 only