Conservation of cofitness between BPHYT_RS30145 and BPHYT_RS16535 in Burkholderia phytofirmans PsJN

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS30145 aconitate hydratase 1.0 BPHYT_RS16535 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.24 15
Paraburkholderia bryophila 376MFSha3.1 0.96 H281DRAFT_02981 aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming) 0.97 H281DRAFT_04239 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 103
Cupriavidus basilensis FW507-4G11 0.93 RR42_RS11270 aconitate hydratase 0.79 RR42_RS02855 dimethylallyladenosine tRNA methylthiotransferase low > 128
Paraburkholderia sabiae LMG 24235 0.87 QEN71_RS31060 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.95 QEN71_RS02195 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 153
Herbaspirillum seropedicae SmR1 0.86 HSERO_RS11425 aconitate hydratase 0.73 HSERO_RS03615 (dimethylallyl)adenosine tRNA methylthiotransferase — —
Shewanella sp. ANA-3 0.86 Shewana3_3827 aconitate hydratase (RefSeq) 0.61 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.65 13
Shewanella oneidensis MR-1 0.86 SO0343 acnA aconitate hydratase 1 (NCBI ptt file) 0.61 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_00890 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.62 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase low > 101
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_4116 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) 0.62 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase low > 87
Ralstonia solanacearum GMI1000 0.85 RS_RS17730 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.79 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 80
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_3821 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) 0.62 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase low > 87
Ralstonia sp. UNC404CL21Col 0.84 ABZR87_RS16735 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.78 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 80
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_6063 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) 0.62 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase low > 103
Ralstonia solanacearum PSI07 0.84 RPSI07_RS00390 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.78 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 81
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_20875 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.62 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase low > 104
Variovorax sp. SCN45 0.84 GFF270 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) 0.71 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) low > 127
Pseudomonas simiae WCS417 0.84 PS417_21070 aconitate hydratase 0.62 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase low > 88
Pseudomonas sp. RS175 0.84 PFR28_02925 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) 0.62 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 88
Pseudomonas fluorescens SBW25 0.84 PFLU_RS22680 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.62 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 109
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS22680 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.62 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_2087 aconitase / 2-methylcitrate dehydratase (trans-methylaconitate-forming) 0.63 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 86
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_2087 aconitase / 2-methylcitrate dehydratase (trans-methylaconitate-forming) 0.63 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 86
Dyella japonica UNC79MFTsu3.2 0.84 ABZR86_RS08435 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.65 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Lysobacter sp. OAE881 0.84 ABIE51_RS09495 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.63 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Kangiella aquimarina DSM 16071 0.83 B158DRAFT_1345 aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent 0.63 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 40
Xanthomonas campestris pv. campestris strain 8004 0.83 Xcc-8004.3979.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) 0.65 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase low > 74
Ralstonia solanacearum IBSBF1503 0.83 RALBFv3_RS22830 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.78 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 76
Ralstonia solanacearum UW163 0.83 UW163_RS23450 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.78 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Shewanella amazonensis SB2B 0.82 Sama_3296 aconitate hydratase (RefSeq) 0.62 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) 0.32 45
Alteromonas macleodii MIT1002 0.82 MIT1002_03131 Aconitate hydratase 1 0.62 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB — —
Shewanella loihica PV-4 0.82 Shew_1822 aconitate hydratase (RefSeq) 0.61 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) low > 60
Marinobacter adhaerens HP15 0.82 HP15_1930 aconitate hydratase 1 0.63 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB — —
Pseudomonas sp. S08-1 0.81 OH686_01680 2-methylisocitrate dehydratase, Fe/S-dependent 0.63 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 80
Pseudomonas stutzeri RCH2 0.80 Psest_2319 aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent 0.61 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB — —
Vibrio cholerae E7946 ATCC 55056 0.79 CSW01_06745 Fe/S-dependent 2-methylisocitrate dehydratase AcnD 0.58 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 62
Acinetobacter radioresistens SK82 0.78 MPMX26_02481 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) 0.56 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 36
Acidovorax sp. GW101-3H11 0.77 Ac3H11_2323 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) 0.72 Ac3H11_4008 tRNA-i(6)A37 methylthiotransferase — —
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS16405 aconitate hydratase 0.31 CA265_RS21675 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 88
Bacteroides stercoris CC31F 0.13 HMPREF1181_RS08305 aconitate hydratase 0.35 HMPREF1181_RS01770 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 56
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_10730 aconitate hydratase 0.32 CA264_05315 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.13 ABZR88_RS16750 aconitate hydratase 0.30 ABZR88_RS18330 MiaB/RimO family radical SAM methylthiotransferase — —
Parabacteroides merdae CL09T00C40 0.12 HMPREF1078_RS07515 aconitate hydratase 0.32 HMPREF1078_RS17135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 61
Phocaeicola vulgatus CL09T03C04 0.12 HMPREF1058_RS14325 aconitate hydratase 0.33 HMPREF1058_RS11280 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 67
Phocaeicola dorei CL03T12C01 0.12 ABI39_RS09955 aconitate hydratase 0.33 ABI39_RS05650 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 72
Bacteroides ovatus ATCC 8483 0.12 BACOVA_03310 aconitate hydratase 0.34 BACOVA_02895 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 94

Not shown: 2 genomes with orthologs for BPHYT_RS30145 only; 57 genomes with orthologs for BPHYT_RS16535 only