Conservation of cofitness between BPHYT_RS16975 and BPHYT_RS14910 in Burkholderia phytofirmans PsJN

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 1.0 BPHYT_RS14910 chorismate mutase 0.77 1
Paraburkholderia graminis OAS925 0.93 ABIE53_003560 shikimate dehydrogenase 0.93 ABIE53_003157 chorismate mutase/prephenate dehydratase — —
Paraburkholderia bryophila 376MFSha3.1 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.93 H281DRAFT_03925 chorismate mutase — —
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS27130 shikimate dehydrogenase 0.89 QEN71_RS04070 prephenate dehydratase 0.69 46
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11300 shikimate dehydrogenase 0.61 RPSI07_RS19710 prephenate dehydratase 0.76 11
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05945 shikimate dehydrogenase 0.60 RALBFv3_RS13760 chorismate mutase low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS07680 shikimate dehydrogenase 0.60 UW163_RS16050 chorismate mutase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS13890 shikimate dehydrogenase 0.62 RS_RS04495 prephenate dehydratase 0.59 8
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01605 shikimate dehydrogenase 0.62 ABZR87_RS09450 prephenate dehydratase 0.65 8
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS01990 shikimate 5-dehydrogenase 0.61 HSERO_RS18430 chorismate mutase 0.76 11
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17645 shikimate dehydrogenase 0.65 RR42_RS04460 chorismate mutase 0.78 19
Pseudomonas sp. S08-1 0.47 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.45 OH686_20870 Chorismate mutase I / Prephenate dehydratase low > 80
Pseudomonas putida KT2440 0.47 PP_0074 shikimate 5-dehydrogenase 0.47 PP_1769 chorismate mutase/Prephenate dehydratase — —
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_0025 shikimate dehydrogenase 0.46 Psyr_3645 prephenate dehydratase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_0025 shikimate dehydrogenase 0.46 Psyr_3645 prephenate dehydratase — —
Pseudomonas sp. RS175 0.46 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.46 PFR28_00907 Bifunctional chorismate mutase/prephenate dehydratase — —
Pseudomonas simiae WCS417 0.45 PS417_00125 shikimate dehydrogenase 0.46 PS417_08125 prephenate dehydratase — —
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_11315 shikimate dehydrogenase 0.46 AO356_03465 prephenate dehydratase — —
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS00120 shikimate dehydrogenase 0.46 PFLU_RS08095 prephenate dehydratase — —
Pseudomonas fluorescens SBW25 0.45 PFLU_RS00120 shikimate dehydrogenase 0.46 PFLU_RS08095 prephenate dehydratase — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.46 Pf6N2E2_2520 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.46 Pf1N1B4_350 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) 0.68 2
Marinobacter adhaerens HP15 0.45 HP15_3750 shikimate dehydrogenase 0.46 HP15_1362 chorismate mutase / prephenate dehydratase — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_00280 shikimate dehydrogenase 0.27 CSW01_03680 bifunctional chorismate mutase/prephenate dehydratase low > 62
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.46 PfGW456L13_2176 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) 0.79 16
Castellaniella sp019104865 MT123 0.44 ABCV34_RS11630 shikimate dehydrogenase 0.55 ABCV34_RS07110 prephenate dehydratase low > 48
Pseudomonas stutzeri RCH2 0.44 Psest_0029 shikimate 5-dehydrogenase 0.45 Psest_1984 chorismate mutase domain of proteobacterial P-protein, clade 2 — —
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_10670 shikimate dehydrogenase 0.46 AO353_02070 prephenate dehydratase 0.89 1
Pantoea sp. MT58 0.40 IAI47_02315 shikimate dehydrogenase 0.24 IAI47_04410 bifunctional chorismate mutase/prephenate dehydratase — —
Escherichia coli BW25113 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.26 b2599 pheA fused chorismate mutase P/prephenate dehydratase (NCBI) 0.92 28
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.26 OHPLBJKB_01109 P-protein low > 73
Escherichia coli BL21 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.26 ECD_02488 chorismate mutase and prephenate dehydratase, P-protein 0.62 15
Escherichia coli ECOR27 0.39 NOLOHH_09355 aroE shikimate dehydrogenase 0.27 NOLOHH_12900 pheA bifunctional chorismate mutase/prephenate dehydratase 0.88 24
Escherichia coli ECRC62 0.39 BNILDI_02165 aroE shikimate dehydrogenase 0.27 BNILDI_11705 pheA bifunctional chorismate mutase/prephenate dehydratase 0.92 18
Escherichia coli ECOR38 0.39 HEPCGN_16385 aroE shikimate dehydrogenase 0.27 HEPCGN_20345 pheA bifunctional chorismate mutase/prephenate dehydratase 0.81 34
Escherichia coli ECRC98 0.38 JDDGAC_21185 aroE shikimate dehydrogenase 0.26 JDDGAC_24890 pheA bifunctional chorismate mutase/prephenate dehydratase 0.77 64
Escherichia coli ECRC100 0.38 OKFHMN_17565 aroE shikimate dehydrogenase 0.26 OKFHMN_21225 pheA bifunctional chorismate mutase/prephenate dehydratase 0.96 13
Escherichia coli ECRC102 0.38 NIAGMN_15325 aroE shikimate dehydrogenase 0.26 NIAGMN_18995 pheA bifunctional chorismate mutase/prephenate dehydratase — —
Escherichia coli ECRC101 0.38 MCAODC_08085 aroE shikimate dehydrogenase 0.26 MCAODC_11755 pheA bifunctional chorismate mutase/prephenate dehydratase 0.84 20
Escherichia coli ECRC99 0.38 KEDOAH_10585 aroE shikimate dehydrogenase 0.26 KEDOAH_06995 pheA bifunctional chorismate mutase/prephenate dehydratase — —
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18840 shikimate dehydrogenase 0.27 ECOLIN_RS14695 bifunctional chorismate mutase/prephenate dehydratase 0.70 38
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.51 Ac3H11_2574 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) 0.90 16
Escherichia fergusonii Becca 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.27 EFB2_01293 Bifunctional chorismate mutase/prephenate dehydratase low > 86
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0046 shikimate dehydrogenase 0.26 EX28DRAFT_2699 chorismate mutase (EC 5.4.99.5) low > 76
Serratia liquefaciens MT49 0.37 IAI46_23240 shikimate dehydrogenase 0.22 IAI46_03965 bifunctional chorismate mutase/prephenate dehydratase 0.57 66
Erwinia tracheiphila SCR3 0.37 LU632_RS22445 aroE shikimate dehydrogenase 0.25 LU632_RS16960 pheA bifunctional chorismate mutase/prephenate dehydratase 0.63 6
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.25 BWI76_RS21465 bifunctional chorismate mutase/prephenate dehydratase 0.69 64
Enterobacter sp. TBS_079 0.36 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.25 MPMX20_03466 Bifunctional chorismate mutase/prephenate dehydratase 0.85 41
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.23 GFF4179 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) low > 78
Variovorax sp. SCN45 0.35 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.50 GFF6182 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) low > 127
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.39 MPMX26_02021 Bifunctional chorismate mutase/prephenate dehydratase 0.96 1
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.25 DZA65_RS17345 bifunctional chorismate mutase/prephenate dehydratase — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00029 Shikimate dehydrogenase 0.26 MIT1002_01316 P-protein — —
Dickeya dadantii 3937 0.35 DDA3937_RS19100 shikimate dehydrogenase 0.25 DDA3937_RS16130 bifunctional chorismate mutase/prephenate dehydratase — —
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.25 HGI48_RS16250 bifunctional chorismate mutase/prephenate dehydratase — —
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.50 ABID97_RS09515 prephenate dehydratase — —
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.24 HER17_RS05385 bifunctional chorismate mutase/prephenate dehydratase 0.94 14
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.43 Xcc-8004.3282.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) 0.84 21
Lysobacter sp. OAE881 0.29 ABIE51_RS01815 shikimate dehydrogenase 0.42 ABIE51_RS12145 prephenate dehydratase 0.73 10
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0259 shikimate 5-dehydrogenase 0.23 B158DRAFT_1385 Prephenate dehydratase low > 40
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.35 DVU0462 chorismate mutase/prephenate dehydratase (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.35 DvMF_1749 prephenate dehydratase (RefSeq) — —

Not shown: 29 genomes with orthologs for BPHYT_RS16975 only; 7 genomes with orthologs for BPHYT_RS14910 only