Conservation of cofitness between BBR_RS19470 and BBR_RS13700 in Bifidobacterium breve UCC2003

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bifidobacterium breve UCC2003 1.0 BBR_RS19470 succinyl-diaminopimelate desuccinylase 1.0 BBR_RS13700 diaminopimelate epimerase 0.95 1
Mycobacterium tuberculosis H37Rv 0.36 Rv1202 Probable succinyl-diaminopimelate desuccinylase DapE 0.19 Rv2726c Probable diaminopimelate epimerase DapF (DAP epimerase) — —
Klebsiella michiganensis M5al 0.12 BWI76_RS10270 acetylornithine deacetylase 0.12 BWI76_RS01200 diaminopimelate epimerase low > 92
Pseudomonas simiae WCS417 0.11 PS417_18910 acetylornithine deacetylase 0.11 PS417_15365 diaminopimelate epimerase low > 88
Azospirillum sp. SherDot2 0.11 MPMX19_03397 Acetylornithine deacetylase 0.17 MPMX19_00602 Diaminopimelate epimerase — —
Pseudomonas putida KT2440 0.11 PP_3571 putative Acetylornithine deacetylase 0.14 PP_3790 diaminopimelate epimerase low > 96
Pseudomonas fluorescens FW300-N2C3 0.11 AO356_25400 acetylornithine deacetylase 0.11 AO356_12735 diaminopimelate epimerase low > 104
Azospirillum brasilense Sp245 0.11 AZOBR_RS30425 acetylornithine deacetylase 0.16 AZOBR_RS14160 diaminopimelate epimerase — —
Pseudomonas fluorescens FW300-N2E3 0.11 AO353_29125 acetylornithine deacetylase 0.10 AO353_09040 diaminopimelate epimerase low > 101
Paraburkholderia sabiae LMG 24235 0.10 QEN71_RS11205 acetylornithine deacetylase 0.16 QEN71_RS00365 diaminopimelate epimerase — —
Pseudomonas fluorescens SBW25-INTG 0.10 PFLU_RS20950 acetylornithine deacetylase 0.10 PFLU_RS17335 diaminopimelate epimerase low > 109
Pseudomonas fluorescens SBW25 0.10 PFLU_RS20950 acetylornithine deacetylase 0.10 PFLU_RS17335 diaminopimelate epimerase low > 109
Pectobacterium carotovorum WPP14 0.10 HER17_RS15310 succinyl-diaminopimelate desuccinylase 0.14 HER17_RS01340 diaminopimelate epimerase — —
Erwinia tracheiphila SCR3 0.10 LU632_RS08355 dapE succinyl-diaminopimelate desuccinylase 0.13 LU632_RS24145 dapF diaminopimelate epimerase — —
Escherichia coli ECRC62 0.10 BNILDI_12445 dapE succinyl-diaminopimelate desuccinylase 0.14 BNILDI_04975 dapF diaminopimelate epimerase — —
Escherichia fergusonii Becca 0.10 EFB2_01416 Succinyl-diaminopimelate desuccinylase 0.14 EFB2_04828 Diaminopimelate epimerase — —
Pseudomonas fluorescens FW300-N2E2 0.10 Pf6N2E2_1339 Acetylornithine deacetylase (EC 3.5.1.16) 0.11 Pf6N2E2_4418 Diaminopimelate epimerase (EC 5.1.1.7) low > 103
Escherichia coli BL21 0.10 ECD_02363 N-succinyl-diaminopimelate deacylase 0.14 ECD_03685 diaminopimelate epimerase — —
Escherichia coli ECOR27 0.10 NOLOHH_13635 dapE succinyl-diaminopimelate desuccinylase 0.14 NOLOHH_06560 dapF diaminopimelate epimerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.10 OHPLBJKB_01259 Succinyl-diaminopimelate desuccinylase 0.14 OHPLBJKB_04241 Diaminopimelate epimerase — —
Escherichia coli BW25113 0.10 b2472 dapE succinyl-diaminopimelate desuccinylase (NCBI) 0.14 b3809 dapF diaminopimelate epimerase (VIMSS) — —
Escherichia coli ECRC101 0.10 MCAODC_12485 dapE succinyl-diaminopimelate desuccinylase 0.14 MCAODC_04935 dapF diaminopimelate epimerase — —
Ralstonia sp. UNC404CL21Col 0.10 ABZR87_RS02060 acetylornithine deacetylase 0.15 ABZR87_RS05580 diaminopimelate epimerase low > 80
Escherichia coli ECRC99 0.10 KEDOAH_06265 dapE succinyl-diaminopimelate desuccinylase 0.14 KEDOAH_13720 dapF diaminopimelate epimerase — —
Enterobacter sp. TBS_079 0.10 MPMX20_03333 Succinyl-diaminopimelate desuccinylase 0.14 MPMX20_04467 Diaminopimelate epimerase — —
Escherichia coli ECRC102 0.10 NIAGMN_19725 dapE succinyl-diaminopimelate desuccinylase 0.14 NIAGMN_12185 dapF diaminopimelate epimerase — —
Escherichia coli ECRC98 0.10 JDDGAC_25900 dapE succinyl-diaminopimelate desuccinylase 0.14 JDDGAC_18055 dapF diaminopimelate epimerase — —
Escherichia coli Nissle 1917 0.10 ECOLIN_RS14105 succinyl-diaminopimelate desuccinylase 0.14 ECOLIN_RS21865 diaminopimelate epimerase — —
Escherichia coli ECRC100 0.10 OKFHMN_21955 dapE succinyl-diaminopimelate desuccinylase 0.14 OKFHMN_14430 dapF diaminopimelate epimerase — —
Escherichia coli ECOR38 0.10 HEPCGN_21125 dapE succinyl-diaminopimelate desuccinylase 0.14 HEPCGN_13135 dapF diaminopimelate epimerase — —
Ralstonia solanacearum PSI07 0.10 RPSI07_RS10860 acetylornithine deacetylase 0.16 RPSI07_RS23305 diaminopimelate epimerase — —
Serratia liquefaciens MT49 0.10 IAI46_18740 succinyl-diaminopimelate desuccinylase 0.14 IAI46_00715 diaminopimelate epimerase — —
Enterobacter asburiae PDN3 0.10 EX28DRAFT_0189 succinyldiaminopimelate desuccinylase (EC 3.5.1.18) 0.14 EX28DRAFT_4478 diaminopimelate epimerase (EC 5.1.1.7) — —
Pantoea sp. MT58 0.10 IAI47_05300 succinyl-diaminopimelate desuccinylase 0.16 IAI47_18410 diaminopimelate epimerase — —
Ralstonia solanacearum UW163 0.10 UW163_RS07245 acetylornithine deacetylase 0.17 UW163_RS03515 diaminopimelate epimerase — —
Ralstonia solanacearum IBSBF1503 0.10 RALBFv3_RS06380 acetylornithine deacetylase 0.17 RALBFv3_RS10065 diaminopimelate epimerase — —
Marinobacter adhaerens HP15 0.09 HP15_1159 succinyl-diaminopimelate desuccinylase 0.15 HP15_248 diaminopimelate epimerase — —
Ralstonia solanacearum GMI1000 0.09 RS_RS08270 acetylornithine deacetylase 0.14 RS_RS00675 diaminopimelate epimerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.09 Psyr_0771 acetylornithine deacetylase 0.10 Psyr_0183 diaminopimelate epimerase — —
Pseudomonas syringae pv. syringae B728a 0.09 Psyr_0771 acetylornithine deacetylase 0.10 Psyr_0183 diaminopimelate epimerase — —
Bacteroides ovatus ATCC 8483 0.09 BACOVA_03358 peptidase dimerization domain protein 0.18 BACOVA_03762 diaminopimelate epimerase low > 94
Bacteroides thetaiotaomicron VPI-5482 0.09 BT3549 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) 0.17 BT0548 diaminopimelate epimerase (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.09 HMPREF1078_RS05835 M20 family metallo-hydrolase 0.17 HMPREF1078_RS01230 diaminopimelate epimerase low > 61
Phaeobacter inhibens DSM 17395 0.09 PGA1_c36420 succinyl-diaminopimelate desuccinylase DapE 0.14 PGA1_c33950 diaminopimelate epimerase DapF — —
Acidovorax sp. GW101-3H11 0.09 Ac3H11_4519 Acetylornithine deacetylase (EC 3.5.1.16) 0.16 Ac3H11_1993 Diaminopimelate epimerase (EC 5.1.1.7) — —
Pseudomonas fluorescens FW300-N1B4 0.09 Pf1N1B4_4930 Acetylornithine deacetylase (EC 3.5.1.16) 0.10 Pf1N1B4_2173 Diaminopimelate epimerase (EC 5.1.1.7) low > 87
Cupriavidus basilensis FW507-4G11 0.09 RR42_RS07840 acetylornithine deacetylase 0.15 RR42_RS01250 diaminopimelate epimerase — —
Bacteroides stercoris CC31F 0.08 HMPREF1181_RS02880 M20 family metallo-hydrolase 0.15 HMPREF1181_RS16035 diaminopimelate epimerase low > 56
Hydrogenophaga sp. GW460-11-11-14-LB1 0.08 GFF4550 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) 0.18 GFF545 Diaminopimelate epimerase (EC 5.1.1.7) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.08 ABZR88_RS04280 M20 family metallo-hydrolase 0.12 ABZR88_RS21670 diaminopimelate epimerase — —
Shewanella amazonensis SB2B 0.08 Sama_1647 succinyl-diaminopimelate desuccinylase (RefSeq) 0.13 Sama_3249 dapF diaminopimelate epimerase (RefSeq) — —
Rhodanobacter denitrificans FW104-10B01 0.08 LRK54_RS14270 succinyl-diaminopimelate desuccinylase 0.15 LRK54_RS08545 diaminopimelate epimerase — —
Rhodanobacter denitrificans MT42 0.08 LRK55_RS13990 succinyl-diaminopimelate desuccinylase 0.15 LRK55_RS08310 diaminopimelate epimerase — —
Phocaeicola vulgatus CL09T03C04 0.07 HMPREF1058_RS12780 M20 family metallo-hydrolase 0.15 HMPREF1058_RS06915 diaminopimelate epimerase low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.07 CA264_06230 acetylornithine deacetylase 0.14 CA264_19550 diaminopimelate epimerase — —
Phocaeicola dorei CL03T12C01 0.07 ABI39_RS07790 M20 family metallo-hydrolase 0.17 ABI39_RS14295 diaminopimelate epimerase low > 72
Pseudomonas sp. S08-1 0.07 OH686_06560 succinyl-diaminopimelate desuccinylase 0.11 OH686_13795 diaminopimelate epimerase — —
Pseudomonas fluorescens GW456-L13 0.07 PfGW456L13_4721 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) 0.10 PfGW456L13_844 Diaminopimelate epimerase (EC 5.1.1.7) — —
Acinetobacter radioresistens SK82 0.06 MPMX26_02507 Succinyl-diaminopimelate desuccinylase 0.13 MPMX26_02231 Diaminopimelate epimerase — —
Vibrio cholerae E7946 ATCC 55056 0.06 CSW01_10735 succinyl-diaminopimelate desuccinylase 0.14 CSW01_00640 diaminopimelate epimerase — —
Rhodanobacter sp. FW510-T8 0.06 OKGIIK_03135 dapE succinyl-diaminopimelate desuccinylase 0.16 OKGIIK_15335 dapF diaminopimelate epimerase — —

Not shown: 6 genomes with orthologs for BBR_RS19470 only; 31 genomes with orthologs for BBR_RS13700 only