Conservation of cofitness between Atu1515 and Atu2315 in Agrobacterium fabrum C58

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu1515 hypothetical protein 1.0 Atu2315 guanine deaminase 0.21 16
Rhizobium sp. OAE497 0.72 ABIE40_RS10895 tRNA dihydrouridine(20/20a) synthase DusA 0.60 ABIE40_RS25220 guanine deaminase low > 107
Sinorhizobium meliloti 1021 0.60 SMc04235 tRNA-dihydrouridine synthase A 0.78 SM_b20849 guanine deaminase low > 103
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_01364 NIFR3-like protein 0.43 CCNA_02699 guanine deaminase low > 67
Caulobacter crescentus NA1000 0.56 CCNA_01364 NIFR3-like protein 0.43 CCNA_02699 guanine deaminase — —
Bosea sp. OAE506 0.52 ABIE41_RS21285 tRNA dihydrouridine(20/20a) synthase DusA 0.51 ABIE41_RS21745 guanine deaminase low > 77
Phaeobacter inhibens DSM 17395 0.52 PGA1_c19230 tRNA-dihydrouridine synthase A 0.43 PGA1_c21840 guanine deaminase GuaD 0.25 47
Serratia liquefaciens MT49 0.52 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA 0.43 IAI46_11780 guanine deaminase low > 86
Azospirillum sp. SherDot2 0.51 MPMX19_00670 tRNA-dihydrouridine(20/20a) synthase 0.50 MPMX19_05617 Guanine deaminase low > 112
Dinoroseobacter shibae DFL-12 0.51 Dshi_2512 TIM-barrel protein, yjbN family (RefSeq) 0.42 Dshi_2771 Guanine deaminase (RefSeq) low > 64
Enterobacter sp. TBS_079 0.51 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase 0.42 MPMX20_01658 Guanine deaminase low > 85
Enterobacter asburiae PDN3 0.51 EX28DRAFT_4263 tRNA dihydrouridine synthase A 0.41 EX28DRAFT_1948 guanine deaminase (EC 3.5.4.3) low > 76
Dickeya dadantii 3937 0.51 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA 0.42 DDA3937_RS12145 guanine deaminase low > 74
Klebsiella michiganensis M5al 0.50 BWI76_RS01900 tRNA-dihydrouridine synthase A 0.42 BWI76_RS10520 guanine deaminase low > 92
Dickeya dianthicola ME23 0.50 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA 0.42 DZA65_RS12690 guanine deaminase low > 75
Escherichia coli BL21 0.50 ECD_03921 tRNA-dihydrouridine synthase A 0.45 ECD_02716 guanine deaminase low > 60
Escherichia coli ECRC101 0.50 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.45 OKFHMN_19625 guaD guanine deaminase — —
Escherichia coli ECRC62 0.50 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.45 BNILDI_10080 guaD guanine deaminase — —
Rahnella sp. WP5 0.50 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA 0.42 EX31_RS07035 guanine deaminase low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase 0.44 OHPLBJKB_00832 Guanine deaminase low > 73
Pantoea sp. MT58 0.50 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA 0.39 IAI47_09810 guanine deaminase low > 76
Escherichia fergusonii Becca 0.50 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase 0.44 EFB2_01018 Guanine deaminase low > 86
Escherichia coli ECOR27 0.50 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.45 NOLOHH_11555 guaD guanine deaminase low > 57
Escherichia coli ECRC102 0.50 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.45 NIAGMN_17395 guaD guanine deaminase — —
Escherichia coli ECRC99 0.50 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.45 KEDOAH_08510 guaD guanine deaminase — —
Escherichia coli ECRC98 0.50 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.45 JDDGAC_23270 guaD guanine deaminase — —
Escherichia coli ECOR38 0.50 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.44 HEPCGN_18915 guaD guanine deaminase low > 85
Escherichia coli Nissle 1917 0.50 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA 0.44 ECOLIN_RS16065 guanine deaminase — —
Dickeya dianthicola 67-19 0.50 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA 0.43 HGI48_RS12240 guanine deaminase low > 71
Escherichia coli BW25113 0.50 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) 0.44 b2883 guaD guanine deaminase (NCBI) low > 76
Escherichia coli ECRC101 0.49 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.45 MCAODC_10150 guaD guanine deaminase — —
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.45 Psyr_1812 guanine deaminase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.45 Psyr_1812 guanine deaminase low > 86
Lysobacter sp. OAE881 0.47 ABIE51_RS03925 tRNA dihydrouridine(20/20a) synthase DusA 0.41 ABIE51_RS09675 guanine deaminase low > 62
Pseudomonas putida KT2440 0.46 PP_2169 tRNA-dihydrouridine synthase A 0.45 PP_4281 guanine deaminase low > 96
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_2257 tRNA dihydrouridine synthase A 0.48 Pf6N2E2_2339 Guanine deaminase (EC 3.5.4.3) low > 103
Pseudomonas simiae WCS417 0.46 PS417_07740 tRNA-dihydrouridine synthase A 0.48 PS417_20900 guanine deaminase low > 88
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS17905 tRNA-dihydrouridine synthase A 0.42 HSERO_RS16335 guanine deaminase low > 78
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.48 PFLU_RS22515 guanine deaminase low > 109
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_02170 tRNA-dihydrouridine synthase A 0.48 AO356_02575 guanine deaminase low > 104
Pseudomonas fluorescens SBW25 0.46 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.48 PFLU_RS22515 guanine deaminase low > 109
Pseudomonas stutzeri RCH2 0.45 Psest_2706 tRNA dihydrouridine synthase A 0.46 Psest_1208 guanine deaminase low > 67
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS22650 tRNA dihydrouridine(20/20a) synthase DusA 0.43 QEN71_RS03900 guanine deaminase low > 153
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS08700 tRNA-dihydrouridine synthase A 0.43 BPHYT_RS15100 guanine deaminase low > 109
Pseudomonas sp. RS175 0.44 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase 0.48 PFR28_01061 Guanine deaminase low > 88
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_57 tRNA dihydrouridine synthase A 0.47 Pf1N1B4_3850 Guanine deaminase (EC 3.5.4.3) low > 87
Paraburkholderia graminis OAS925 0.44 ABIE53_001975 tRNA-dihydrouridine synthase A 0.43 ABIE53_003192 guanine deaminase low > 113
Ralstonia solanacearum PSI07 0.44 RPSI07_RS17630 tRNA dihydrouridine(20/20a) synthase DusA 0.42 RPSI07_RS14150 guanine deaminase low > 81
Variovorax sp. SCN45 0.44 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) 0.35 GFF1914 Guanine deaminase (EC 3.5.4.3) low > 127
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS15730 tRNA dihydrouridine(20/20a) synthase DusA 0.43 RALBFv3_RS03160 guanine deaminase low > 76
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS11300 tRNA dihydrouridine(20/20a) synthase DusA 0.43 ABZR87_RS15060 guanine deaminase low > 80
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_00295 tRNA-dihydrouridine synthase A 0.47 AO353_00745 guanine deaminase low > 101
Ralstonia solanacearum UW163 0.44 UW163_RS13175 tRNA dihydrouridine(20/20a) synthase DusA 0.43 UW163_RS10565 guanine deaminase — —
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_00766 tRNA-U16,U17-dihydrouridine synthase 0.44 H281DRAFT_03965 guanine deaminase low > 103
Alteromonas macleodii MIT1002 0.44 MIT1002_03387 putative tRNA-dihydrouridine synthase 0.38 MIT1002_01570 Guanine deaminase low > 70
Ralstonia solanacearum GMI1000 0.44 RS_RS06510 tRNA dihydrouridine(20/20a) synthase DusA 0.42 RS_RS10530 guanine deaminase low > 80
Acinetobacter radioresistens SK82 0.44 MPMX26_00482 tRNA-dihydrouridine(20/20a) synthase 0.46 MPMX26_03062 Guanine deaminase low > 36
Acidovorax sp. GW101-3H11 0.44 Ac3H11_2288 tRNA dihydrouridine synthase A 0.36 Ac3H11_1117 Guanine deaminase (EC 3.5.4.3) low > 79
Variovorax sp. OAS795 0.43 ABID97_RS13915 tRNA dihydrouridine(20/20a) synthase DusA 0.35 ABID97_RS22045 guanine deaminase low > 91
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS12665 tRNA-dihydrouridine synthase A 0.44 RR42_RS05320 guanine deaminase low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF4791 tRNA dihydrouridine synthase A 0.35 GFF213 Guanine deaminase (EC 3.5.4.3) low > 90
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_3987 tRNA dihydrouridine synthase A 0.47 PfGW456L13_4087 Guanine deaminase (EC 3.5.4.3) low > 87
Castellaniella sp019104865 MT123 0.40 ABCV34_RS04335 tRNA dihydrouridine(20/20a) synthase DusA 0.43 ABCV34_RS12195 guanine deaminase low > 48

Not shown: 21 genomes with orthologs for Atu1515 only; 1 genomes with orthologs for Atu2315 only