Conservation of cofitness between Atu0035 and Atu1620 in Agrobacterium fabrum C58

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0035 phosphoenolpyruvate carboxykinase 1.0 Atu1620 triosephosphate isomerase 0.80 4
Rhizobium sp. OAE497 0.80 ABIE40_RS19415 phosphoenolpyruvate carboxykinase 0.81 ABIE40_RS09645 triose-phosphate isomerase 0.38 82
Sinorhizobium meliloti 1021 0.80 SMc02562 phosphoenolpyruvate carboxykinase 0.85 SMc01023 triosephosphate isomerase low > 103
Rhodopseudomonas palustris CGA009 0.69 TX73_001865 phosphoenolpyruvate carboxykinase 0.58 TX73_014970 triose-phosphate isomerase — —
Dinoroseobacter shibae DFL-12 0.64 Dshi_0213 Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) 0.46 Dshi_2078 Triose-phosphate isomerase (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.63 Ga0059261_0913 phosphoenolpyruvate carboxykinase (ATP) 0.41 Ga0059261_0254 triosephosphate isomerase (EC 5.3.1.1) — —
Phaeobacter inhibens DSM 17395 0.63 PGA1_c01140 phosphoenolpyruvate carboxykinase 0.54 PGA1_c20650 triosephosphate isomerase TpiA — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.51 CA264_05270 phosphoenolpyruvate carboxykinase (ATP) 0.33 CA264_14890 triose-phosphate isomerase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.49 Echvi_2957 phosphoenolpyruvate carboxykinase (ATP) 0.31 Echvi_1196 triosephosphate isomerase — —
Shewanella amazonensis SB2B 0.47 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) 0.36 Sama_0957 Triose-phosphate isomerase (RefSeq) — —
Pedobacter sp. GW460-11-11-14-LB5 0.47 CA265_RS23490 phosphoenolpyruvate carboxykinase (ATP) 0.33 CA265_RS10795 triose-phosphate isomerase — —
Fusobacterium nucleatum SB010 0.47 HUW76_06485 phosphoenolpyruvate carboxykinase (ATP) 0.37 HUW76_08545 triose-phosphate isomerase — —
Shewanella loihica PV-4 0.46 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) 0.36 Shew_2831 Triose-phosphate isomerase (RefSeq) — —
Shewanella sp. ANA-3 0.45 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) 0.38 Shewana3_1026 triosephosphate isomerase (RefSeq) — —
Shewanella oneidensis MR-1 0.45 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) 0.38 SO1200 tpiA triosephosphate isomerase (NCBI ptt file) — —
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_2395 phosphoenolpyruvate carboxykinase (ATP) 0.38 B158DRAFT_0649 triosephosphate isomerase (EC 5.3.1.1) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) 0.34 OHPLBJKB_04132 Triosephosphate isomerase — —
Escherichia coli BW25113 0.44 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) 0.34 b3919 tpiA triosephosphate isomerase (NCBI) — —
Escherichia coli ECRC62 0.44 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) 0.34 BNILDI_05585 tpiA triose-phosphate isomerase — —
Escherichia fergusonii Becca 0.44 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) 0.34 EFB2_04699 Triosephosphate isomerase — —
Escherichia coli ECOR27 0.44 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) 0.34 NOLOHH_05945 tpiA triose-phosphate isomerase — —
Escherichia coli BL21 0.44 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] 0.34 ECD_03804 triosephosphate isomerase — —
Escherichia coli ECOR38 0.44 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) 0.34 HEPCGN_12455 tpiA triose-phosphate isomerase — —
Escherichia coli Nissle 1917 0.44 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) 0.34 ECOLIN_RS22575 triose-phosphate isomerase — —
Escherichia coli ECRC101 0.44 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) 0.34 OKFHMN_13810 tpiA triose-phosphate isomerase — —
Escherichia coli ECRC99 0.44 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) 0.34 KEDOAH_14350 tpiA triose-phosphate isomerase — —
Serratia liquefaciens MT49 0.44 IAI46_10700 phosphoenolpyruvate carboxykinase (ATP) 0.33 IAI46_24635 triose-phosphate isomerase — —
Escherichia coli ECRC102 0.44 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) 0.34 NIAGMN_11565 tpiA triose-phosphate isomerase — —
Escherichia coli ECRC101 0.44 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) 0.34 MCAODC_04310 tpiA triose-phosphate isomerase — —
Escherichia coli ECRC98 0.44 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) 0.34 JDDGAC_17435 tpiA triose-phosphate isomerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.35 GFF2302 Triosephosphate isomerase (EC 5.3.1.1) — —
Erwinia tracheiphila SCR3 0.44 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) 0.34 LU632_RS19730 tpiA triose-phosphate isomerase — —
Alteromonas macleodii MIT1002 0.43 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] 0.35 MIT1002_01868 Triosephosphate isomerase — —
Pantoea sp. MT58 0.43 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) 0.34 IAI47_00795 triose-phosphate isomerase — —
Rahnella sp. WP5 0.43 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) 0.33 EX31_RS14300 triose-phosphate isomerase — —
Dickeya dianthicola 67-19 0.43 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) 0.35 HGI48_RS20510 triose-phosphate isomerase — —
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) 0.36 EX28DRAFT_4394 triosephosphate isomerase (EC 5.3.1.1) — —
Pectobacterium carotovorum WPP14 0.43 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) 0.35 HER17_RS00800 triose-phosphate isomerase — —
Dickeya dianthicola ME23 0.43 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) 0.35 DZA65_RS21555 triose-phosphate isomerase — —
Enterobacter sp. TBS_079 0.43 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) 0.36 MPMX20_04548 Triosephosphate isomerase — —
Dickeya dadantii 3937 0.43 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) 0.35 DDA3937_RS00865 triose-phosphate isomerase low > 74
Klebsiella michiganensis M5al 0.43 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) 0.34 BWI76_RS27465 triose-phosphate isomerase — —
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 0.30 CSW01_13490 triose-phosphate isomerase — —
Pseudomonas stutzeri RCH2 0.41 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) 0.38 Psest_0975 triosephosphate isomerase — —
Pseudomonas sp. S08-1 0.41 OH686_11060 phosphoenolpyruvate carboxykinase (ATP) 0.37 OH686_17115 triose-phosphate isomerase — —
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS10065 phosphoenolpyruvate carboxykinase (ATP) 0.34 HMPREF1058_RS08270 triose-phosphate isomerase — —
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS07235 phosphoenolpyruvate carboxykinase (ATP) 0.34 HMPREF1078_RS12745 triose-phosphate isomerase — —
Marinobacter adhaerens HP15 0.40 HP15_3498 phosphoenolpyruvate carboxykinase (ATP) 0.33 HP15_3071 triosephosphate isomerase — —
Bacteroides thetaiotaomicron VPI-5482 0.39 BT2790 phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file) 0.34 BT3929 triosephosphate isomerase (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.39 HMPREF1181_RS01170 phosphoenolpyruvate carboxykinase (ATP) 0.35 HMPREF1181_RS06595 triose-phosphate isomerase — —
Pseudomonas sp. RS175 0.39 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) 0.35 PFR28_00085 Triosephosphate isomerase — —
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.35 Pf1N1B4_1164 Triosephosphate isomerase (EC 5.3.1.1) — —
Bacteroides ovatus ATCC 8483 0.39 BACOVA_02011 phosphoenolpyruvate carboxykinase (ATP) 0.34 BACOVA_01155 triose-phosphate isomerase — —
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] 0.35 AO353_05590 triosephosphate isomerase — —
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.35 PfGW456L13_5091 Triosephosphate isomerase (EC 5.3.1.1) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.37 Psyr_4184 triosephosphate isomerase — —
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.37 Psyr_4184 triosephosphate isomerase — —
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.35 Pf6N2E2_3356 Triosephosphate isomerase (EC 5.3.1.1) — —
Pseudomonas simiae WCS417 0.38 PS417_01210 hypothetical protein 0.35 PS417_24000 triosephosphate isomerase — —
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] 0.35 AO356_07440 triosephosphate isomerase — —
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.35 PFLU_RS25840 triose-phosphate isomerase — —
Pseudomonas fluorescens SBW25 0.38 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.35 PFLU_RS25840 triose-phosphate isomerase — —

Not shown: 2 genomes with orthologs for Atu0035 only; 37 genomes with orthologs for Atu1620 only