Conservation of cofitness between ABZR87_RS10175 and ABZR87_RS14510 in Ralstonia sp. UNC404CL21Col

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Ralstonia sp. UNC404CL21Col 1.0 ABZR87_RS10175 MucB/RseB C-terminal domain-containing protein 1.0 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.71 4
Ralstonia solanacearum IBSBF1503 0.92 RALBFv3_RS14455 sugar dehydratase 0.91 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum UW163 0.92 UW163_RS11920 sugar dehydratase 0.91 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum GMI1000 0.92 RS_RS05235 sugar dehydratase 0.93 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum PSI07 0.92 RPSI07_RS19005 sugar dehydratase 0.92 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA low > 81
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS14070 sugar dehydratase 0.70 RR42_RS14370 tRNA pseudouridine synthase A — —
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS04585 MucB/RseB C-terminal domain-containing protein 0.65 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS14395 sugar dehydratase 0.63 BPHYT_RS33885 tRNA pseudouridine synthase A low > 109
Paraburkholderia graminis OAS925 0.41 ABIE53_003041 sigma-E factor negative regulatory protein RseB 0.62 ABIE53_004807 tRNA pseudouridine38-40 synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_04357 sigma E regulatory protein, MucB/RseB 0.63 H281DRAFT_06069 tRNA pseudouridine38-40 synthase low > 103
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS09635 transcriptional regulator 0.55 HSERO_RS16485 tRNA pseudouridine synthase A low > 78
Variovorax sp. OAS795 0.28 ABID97_RS08340 MucB/RseB C-terminal domain-containing protein 0.46 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF3341 Sigma factor RpoE negative regulatory protein RseB precursor 0.45 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 90
Variovorax sp. SCN45 0.27 GFF3865 Sigma factor RpoE negative regulatory protein RseB precursor 0.49 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) low > 127
Castellaniella sp019104865 MT123 0.23 ABCV34_RS08345 MucB/RseB C-terminal domain-containing protein 0.52 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA low > 48
Acidovorax sp. GW101-3H11 0.23 Ac3H11_1571 Sigma factor RpoE negative regulatory protein RseB precursor 0.49 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Marinobacter adhaerens HP15 0.14 HP15_777 sigma E regulatory protein, MucB/RseB 0.40 HP15_1829 tRNA pseudouridine synthase A — —
Pseudomonas putida KT2440 0.14 PP_1429 Sigma factor AlgU regulatory protein MucB 0.44 PP_1994 tRNA pseudouridine (38-40)synthase low > 96
Pseudomonas sp. S08-1 0.13 OH686_20055 Sigma factor RpoE negative regulatory protein RseB precursor 0.42 OH686_04450 tRNA pseudouridine(38-40) synthase — —
Pseudomonas simiae WCS417 0.12 PS417_07130 RNA polymerase sigma-H factor AlgU 0.41 PS417_18565 pseudouridine synthase — —
Escherichia coli Nissle 1917 0.12 ECOLIN_RS14550 sigma-E factor regulatory protein RseB 0.42 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA low > 55
Escherichia coli ECRC101 0.12 MCAODC_11915 rseB sigma-E factor regulatory protein RseB 0.42 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC99 0.12 KEDOAH_06835 rseB sigma-E factor regulatory protein RseB 0.42 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC100 0.12 OKFHMN_21385 rseB sigma-E factor regulatory protein RseB 0.42 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase low > 80
Escherichia coli ECOR38 0.12 HEPCGN_20530 rseB sigma-E factor regulatory protein RseB 0.42 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 87
Escherichia coli BW25113 0.12 b2571 rseB periplasmic negative regulator of sigmaE (NCBI) 0.43 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Escherichia coli ECRC102 0.12 NIAGMN_19155 rseB sigma-E factor regulatory protein RseB 0.42 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC62 0.12 BNILDI_11860 rseB sigma-E factor regulatory protein RseB 0.42 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA low > 75
Escherichia coli BL21 0.12 ECD_02465 anti-sigma E factor, binds RseA 0.43 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Escherichia fergusonii Becca 0.12 EFB2_01325 Sigma-E factor regulatory protein RseB 0.43 EFB2_01540 tRNA pseudouridine synthase A low > 86
Escherichia coli ECRC98 0.12 JDDGAC_25050 rseB sigma-E factor regulatory protein RseB 0.42 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.12 OHPLBJKB_01136 Sigma-E factor regulatory protein RseB 0.43 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli ECOR27 0.12 NOLOHH_13060 rseB sigma-E factor regulatory protein RseB 0.43 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA low > 75
Pseudomonas stutzeri RCH2 0.11 Psest_3098 Negative regulator of sigma E activity 0.41 Psest_2585 pseudouridylate synthase I — —
Pseudomonas sp. RS175 0.11 PFR28_00692 Sigma factor AlgU regulatory protein MucB 0.41 PFR28_02817 tRNA pseudouridine synthase A low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.11 GFF2109 Sigma factor RpoE negative regulatory protein RseB precursor 0.43 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 78
Pseudomonas fluorescens FW300-N2C3 0.11 AO356_04565 RNA polymerase subunit sigma 0.42 AO356_21435 pseudouridine synthase low > 104
Pseudomonas fluorescens GW456-L13 0.11 PfGW456L13_4514 Sigma factor RpoE negative regulatory protein RseB precursor 0.42 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.11 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.41 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.11 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.41 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas fluorescens SBW25 0.11 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 0.41 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25-INTG 0.11 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 0.41 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens FW300-N2E3 0.11 AO353_17635 RNA polymerase subunit sigma 0.42 AO353_20660 pseudouridine synthase low > 101
Enterobacter sp. TBS_079 0.11 MPMX20_03442 Sigma-E factor regulatory protein RseB 0.44 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Pseudomonas fluorescens FW300-N2E2 0.11 Pf6N2E2_2754 Sigma factor RpoE negative regulatory protein RseB precursor 0.42 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 103
Enterobacter asburiae PDN3 0.10 EX28DRAFT_0074 sigma E regulatory protein, MucB/RseB 0.44 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Serratia liquefaciens MT49 0.10 IAI46_19575 sigma-E factor regulatory protein RseB 0.42 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Dickeya dianthicola 67-19 0.10 HGI48_RS15840 sigma-E factor regulatory protein RseB 0.42 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Dickeya dianthicola ME23 0.10 DZA65_RS16920 sigma-E factor regulatory protein RseB 0.43 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Pseudomonas fluorescens FW300-N1B4 0.10 Pf1N1B4_3325 Sigma factor RpoE negative regulatory protein RseB precursor 0.43 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Vibrio cholerae E7946 ATCC 55056 0.10 CSW01_12475 sigma-E factor regulatory protein RseB 0.42 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA — —
Dickeya dadantii 3937 0.10 DDA3937_RS15755 sigma-E factor regulatory protein RseB 0.43 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Pantoea sp. MT58 0.09 IAI47_04860 sigma-E factor regulatory protein RseB 0.40 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA low > 76
Klebsiella michiganensis M5al 0.09 BWI76_RS21345 sigma-E factor regulatory protein RseB 0.42 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Shewanella loihica PV-4 0.09 Shew_1050 sigma E regulatory protein, MucB/RseB (RefSeq) 0.44 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Shewanella amazonensis SB2B 0.08 Sama_0876 putative sigma E regulatory protein, MucB/RseB (RefSeq) 0.43 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Rahnella sp. WP5 0.08 EX31_RS21810 sigma-E factor regulatory protein RseB 0.44 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Shewanella sp. ANA-3 0.08 Shewana3_3030 sigma E regulatory protein, MucB/RseB (RefSeq) 0.44 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) low > 73
Pectobacterium carotovorum WPP14 0.07 HER17_RS05790 sigma-E factor regulatory protein RseB 0.41 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75

Not shown: 1 genomes with orthologs for ABZR87_RS10175 only; 44 genomes with orthologs for ABZR87_RS14510 only