Conservation of cofitness between ABZR87_RS10175 and ABZR87_RS08950 in Ralstonia sp. UNC404CL21Col

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Ralstonia sp. UNC404CL21Col 1.0 ABZR87_RS10175 MucB/RseB C-terminal domain-containing protein 1.0 ABZR87_RS08950 transcriptional regulator NrdR 0.62 13
Ralstonia solanacearum UW163 0.92 UW163_RS11920 sugar dehydratase 1.00 UW163_RS00675 transcriptional regulator NrdR — —
Ralstonia solanacearum IBSBF1503 0.92 RALBFv3_RS14455 sugar dehydratase 1.00 RALBFv3_RS12890 transcriptional regulator NrdR low > 76
Ralstonia solanacearum GMI1000 0.92 RS_RS05235 sugar dehydratase 1.00 RS_RS03665 transcriptional regulator NrdR — —
Ralstonia solanacearum PSI07 0.92 RPSI07_RS19005 sugar dehydratase 1.00 RPSI07_RS20335 transcriptional regulator NrdR low > 81
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS14070 sugar dehydratase 0.88 RR42_RS15490 NrdR family transcriptional regulator low > 128
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS04585 MucB/RseB C-terminal domain-containing protein 0.64 QEN71_RS26230 transcriptional regulator NrdR low > 153
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS14395 sugar dehydratase 0.64 BPHYT_RS03730 transcriptional repressor NrdR low > 109
Paraburkholderia graminis OAS925 0.41 ABIE53_003041 sigma-E factor negative regulatory protein RseB 0.65 ABIE53_000889 transcriptional repressor NrdR low > 113
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_04357 sigma E regulatory protein, MucB/RseB 0.65 H281DRAFT_04727 transcriptional repressor NrdR low > 103
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS09635 transcriptional regulator 0.70 HSERO_RS06145 NrdR family transcriptional regulator low > 78
Variovorax sp. OAS795 0.28 ABID97_RS08340 MucB/RseB C-terminal domain-containing protein 0.70 ABID97_RS17895 transcriptional regulator NrdR low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF3341 Sigma factor RpoE negative regulatory protein RseB precursor 0.67 GFF5153 Ribonucleotide reductase transcriptional regulator NrdR low > 90
Variovorax sp. SCN45 0.27 GFF3865 Sigma factor RpoE negative regulatory protein RseB precursor 0.70 GFF561 Ribonucleotide reductase transcriptional regulator NrdR low > 127
Acidovorax sp. GW101-3H11 0.23 Ac3H11_1571 Sigma factor RpoE negative regulatory protein RseB precursor 0.60 Ac3H11_2922 Ribonucleotide reductase transcriptional regulator NrdR — —
Castellaniella sp019104865 MT123 0.23 ABCV34_RS08345 MucB/RseB C-terminal domain-containing protein 0.59 ABCV34_RS10550 transcriptional regulator NrdR 0.81 33
Marinobacter adhaerens HP15 0.14 HP15_777 sigma E regulatory protein, MucB/RseB 0.55 HP15_491 transcriptional repressor NrdR — —
Pseudomonas putida KT2440 0.14 PP_1429 Sigma factor AlgU regulatory protein MucB 0.53 PP_0513 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP low > 96
Pseudomonas sp. S08-1 0.13 OH686_20055 Sigma factor RpoE negative regulatory protein RseB precursor 0.53 OH686_15690 transcriptional regulator NrdR — —
Pseudomonas simiae WCS417 0.12 PS417_07130 RNA polymerase sigma-H factor AlgU 0.54 PS417_25270 NrdR family transcriptional regulator low > 88
Escherichia coli BW25113 0.12 b2571 rseB periplasmic negative regulator of sigmaE (NCBI) 0.50 b0413 ybaD hypothetical protein (NCBI) — —
Escherichia coli BL21 0.12 ECD_02465 anti-sigma E factor, binds RseA 0.50 ECD_00361 Nrd regulon repressor low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.12 OHPLBJKB_01136 Sigma-E factor regulatory protein RseB 0.50 OHPLBJKB_03263 Transcriptional repressor NrdR low > 73
Escherichia coli ECRC100 0.12 OKFHMN_21385 rseB sigma-E factor regulatory protein RseB 0.50 OKFHMN_08460 nrdR transcriptional regulator NrdR low > 80
Escherichia fergusonii Becca 0.12 EFB2_01325 Sigma-E factor regulatory protein RseB 0.50 EFB2_03644 Transcriptional repressor NrdR low > 86
Escherichia coli ECRC101 0.12 MCAODC_11915 rseB sigma-E factor regulatory protein RseB 0.50 MCAODC_27685 nrdR transcriptional regulator NrdR low > 87
Escherichia coli ECRC98 0.12 JDDGAC_25050 rseB sigma-E factor regulatory protein RseB 0.50 JDDGAC_12115 nrdR transcriptional regulator NrdR low > 86
Escherichia coli ECRC99 0.12 KEDOAH_06835 rseB sigma-E factor regulatory protein RseB 0.50 KEDOAH_19505 nrdR transcriptional regulator NrdR — —
Escherichia coli ECRC102 0.12 NIAGMN_19155 rseB sigma-E factor regulatory protein RseB 0.50 NIAGMN_06515 nrdR transcriptional regulator NrdR — —
Escherichia coli ECOR38 0.12 HEPCGN_20530 rseB sigma-E factor regulatory protein RseB 0.50 HEPCGN_07085 nrdR transcriptional regulator NrdR low > 87
Escherichia coli Nissle 1917 0.12 ECOLIN_RS14550 sigma-E factor regulatory protein RseB 0.50 ECOLIN_RS02500 transcriptional regulator NrdR low > 55
Escherichia coli ECRC62 0.12 BNILDI_11860 rseB sigma-E factor regulatory protein RseB 0.50 BNILDI_22820 nrdR transcriptional regulator NrdR — —
Escherichia coli ECOR27 0.12 NOLOHH_13060 rseB sigma-E factor regulatory protein RseB 0.50 NOLOHH_01405 nrdR transcriptional regulator NrdR low > 75
Pseudomonas stutzeri RCH2 0.11 Psest_3098 Negative regulator of sigma E activity 0.53 Psest_3553 transcriptional regulator NrdR — —
Pseudomonas fluorescens FW300-N2C3 0.11 AO356_04565 RNA polymerase subunit sigma 0.53 AO356_14925 NrdR family transcriptional regulator — —
Pseudomonas fluorescens GW456-L13 0.11 PfGW456L13_4514 Sigma factor RpoE negative regulatory protein RseB precursor 0.53 PfGW456L13_1312 Ribonucleotide reductase transcriptional regulator NrdR low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.11 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.54 Psyr_4463 Protein of unknown function DUF193 low > 86
Pseudomonas syringae pv. syringae B728a 0.11 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.54 Psyr_4463 Protein of unknown function DUF193 low > 86
Pseudomonas fluorescens SBW25 0.11 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 0.52 PFLU_RS26905 transcriptional regulator NrdR low > 109
Pseudomonas fluorescens SBW25-INTG 0.11 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 0.52 PFLU_RS26905 transcriptional regulator NrdR low > 109
Pseudomonas fluorescens FW300-N2E3 0.11 AO353_17635 RNA polymerase subunit sigma 0.54 AO353_06720 NrdR family transcriptional regulator low > 101
Enterobacter sp. TBS_079 0.11 MPMX20_03442 Sigma-E factor regulatory protein RseB 0.50 MPMX20_01005 Transcriptional repressor NrdR low > 85
Enterobacter asburiae PDN3 0.10 EX28DRAFT_0074 sigma E regulatory protein, MucB/RseB 0.50 EX28DRAFT_2557 transcriptional regulator NrdR — —
Serratia liquefaciens MT49 0.10 IAI46_19575 sigma-E factor regulatory protein RseB 0.48 IAI46_04890 transcriptional regulator NrdR low > 86
Dickeya dianthicola 67-19 0.10 HGI48_RS15840 sigma-E factor regulatory protein RseB 0.50 HGI48_RS05560 transcriptional regulator NrdR low > 71
Dickeya dianthicola ME23 0.10 DZA65_RS16920 sigma-E factor regulatory protein RseB 0.50 DZA65_RS05885 transcriptional regulator NrdR low > 75
Vibrio cholerae E7946 ATCC 55056 0.10 CSW01_12475 sigma-E factor regulatory protein RseB 0.53 CSW01_11565 transcriptional regulator NrdR — —
Pseudomonas fluorescens FW300-N1B4 0.10 Pf1N1B4_3325 Sigma factor RpoE negative regulatory protein RseB precursor 0.53 Pf1N1B4_2648 Ribonucleotide reductase transcriptional regulator NrdR — —
Dickeya dadantii 3937 0.10 DDA3937_RS15755 sigma-E factor regulatory protein RseB 0.50 DDA3937_RS05500 transcriptional regulator NrdR low > 74
Pantoea sp. MT58 0.09 IAI47_04860 sigma-E factor regulatory protein RseB 0.52 IAI47_14775 transcriptional regulator NrdR low > 76
Klebsiella michiganensis M5al 0.09 BWI76_RS21345 sigma-E factor regulatory protein RseB 0.50 BWI76_RS06345 transcriptional regulator NrdR — —
Shewanella loihica PV-4 0.09 Shew_1050 sigma E regulatory protein, MucB/RseB (RefSeq) 0.50 Shew_1186 transcriptional regulator NrdR (RefSeq) low > 60
Shewanella oneidensis MR-1 0.09 SO1344 rseB sigma-E factor regulatory protein RseB (NCBI ptt file) 0.51 SO3470 conserved hypothetical protein TIGR00244 (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.08 Sama_0876 putative sigma E regulatory protein, MucB/RseB (RefSeq) 0.51 Sama_1015 nrdR transcriptional regulator NrdR (RefSeq) low > 62
Rahnella sp. WP5 0.08 EX31_RS21810 sigma-E factor regulatory protein RseB 0.48 EX31_RS22120 transcriptional regulator NrdR low > 89
Shewanella sp. ANA-3 0.08 Shewana3_3030 sigma E regulatory protein, MucB/RseB (RefSeq) 0.51 Shewana3_1095 nrdR transcriptional regulator NrdR (RefSeq) low > 73
Pectobacterium carotovorum WPP14 0.07 HER17_RS05790 sigma-E factor regulatory protein RseB 0.48 HER17_RS15965 transcriptional regulator NrdR 0.60 71

Not shown: 3 genomes with orthologs for ABZR87_RS10175 only; 30 genomes with orthologs for ABZR87_RS08950 only