| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.0 | ABZR87_RS02065 | | M20 aminoacylase family protein | 0.43 | 7 |
| Ralstonia solanacearum PSI07 | 0.94 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.93 | RPSI07_RS10830 | | amidohydrolase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.94 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.94 | RS_RS14355 | | amidohydrolase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.93 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.93 | RALBFv3_RS06410 | | amidohydrolase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.93 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.93 | UW163_RS07215 | | amidohydrolase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.79 | RR42_RS13170 | | 23S rRNA methyltransferase | 0.83 | RR42_RS18215 | | amidohydrolase | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.77 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.74 | QEN71_RS27465 | | M20 aminoacylase family protein | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.74 | BPHYT_RS09125 | | 23S rRNA methyltransferase | 0.74 | BPHYT_RS17305 | | amidohydrolase | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.73 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | 0.61 | H281DRAFT_06224 | | hippurate hydrolase | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.68 | HSERO_RS14825 | | 23S rRNA methyltransferase | 0.50 | HSERO_RS04135 | | amidohydrolase | low | > 78 |
| Acidovorax sp. GW101-3H11 | 0.59 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.67 | Ac3H11_4520 | | Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.58 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.69 | GFF401 | | Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A | low | > 90 |
| Dechlorosoma suillum PS | 0.56 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.56 | Dsui_0989 | | amidohydrolase | low | > 51 |
| Variovorax sp. SCN45 | 0.54 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | 0.63 | GFF5004 | | N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.53 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.60 | ABCV34_RS09590 | | M20 aminoacylase family protein | low | > 48 |
| Kangiella aquimarina DSM 16071 | 0.39 | B158DRAFT_2275 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.29 | B158DRAFT_1782 | | amidohydrolase | low | > 40 |
| Pectobacterium carotovorum WPP14 | 0.32 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.41 | HER17_RS16465 | | M20 family metallopeptidase | low | > 75 |
| Rahnella sp. WP5 | 0.31 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.46 | EX31_RS24820 | | amidohydrolase | low | > 89 |
| Enterobacter asburiae PDN3 | 0.30 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.30 | EX28DRAFT_1051 | | amidohydrolase | low | > 76 |
| Escherichia coli Nissle 1917 | 0.30 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.44 | ECOLIN_RS22880 | | M20 aminoacylase family protein | low | > 55 |
| Dickeya dadantii 3937 | 0.30 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.42 | DDA3937_RS07010 | | amidohydrolase | low | > 74 |
| Serratia liquefaciens MT49 | 0.30 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.48 | IAI46_17105 | | amidohydrolase | low | > 86 |
| Escherichia coli ECRC99 | 0.30 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.44 | KEDOAH_14605 | abgB | amidohydrolase | — | — |
| Escherichia coli ECRC100 | 0.30 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.44 | OKFHMN_13555 | abgB | amidohydrolase | low | > 80 |
| Escherichia coli ECRC98 | 0.30 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.44 | JDDGAC_17180 | abgB | amidohydrolase | low | > 86 |
| Escherichia fergusonii Becca | 0.30 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.44 | EFB2_04649 | | Hippurate hydrolase | low | > 86 |
| Escherichia coli ECRC102 | 0.30 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.44 | NIAGMN_11305 | abgB | amidohydrolase | — | — |
| Escherichia coli ECRC101 | 0.30 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.44 | MCAODC_04055 | abgB | amidohydrolase | low | > 87 |
| Dickeya dianthicola ME23 | 0.29 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.40 | DZA65_RS02540 | | amidohydrolase | low | > 75 |
| Enterobacter sp. TBS_079 | 0.29 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.30 | MPMX20_02402 | | N-acetylcysteine deacetylase | low | > 85 |
| Klebsiella michiganensis M5al | 0.29 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | 0.45 | BWI76_RS07340 | | amidohydrolase | low | > 92 |
| Dickeya dianthicola 67-19 | 0.29 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.43 | HGI48_RS07940 | | amidohydrolase | low | > 71 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.27 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.42 | Psyr_3523 | | Peptidase M20D, amidohydrolase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.27 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.42 | Psyr_3523 | | Peptidase M20D, amidohydrolase | low | > 86 |
| Alteromonas macleodii MIT1002 | 0.24 | MIT1002_00793 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.29 | MIT1002_00518 | | putative hydrolase YxeP | low | > 70 |
| Synechococcus elongatus PCC 7942 | 0.17 | Synpcc7942_0241 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.37 | Synpcc7942_0256 | ama | Peptidase M20D, amidohydrolase | low | > 38 |
| Desulfovibrio vulgaris Miyazaki F | 0.15 | DvMF_1383 | | RNA methyltransferase, TrmA family (RefSeq) | 0.34 | DvMF_1012 | | amidohydrolase (RefSeq) | low | > 51 |
| Phaeobacter inhibens DSM 17395 | 0.15 | PGA1_c34810 | | putative RNA methyltransferase | 0.45 | PGA1_c10170 | | putative hippurate hydrolase | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.14 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | 0.44 | Dshi_1288 | | amidohydrolase (RefSeq) | low | > 64 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.14 | Echvi_0172 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.31 | Echvi_1427 | | putative N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) (from data) | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.14 | ABZR88_RS21250 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.32 | ABZR88_RS16095 | | M20 family metallopeptidase | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.14 | DVU0924 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) | 0.34 | DVU2568 | cpsA | peptidase, M20/M25/M40 family (TIGR) | low | > 55 |
| Agrobacterium fabrum C58 | 0.13 | Atu0735 | | RNA methyltransferase | 0.49 | Atu3635 | | amidohydrolase | low | > 89 |
| Azospirillum brasilense Sp245 | 0.13 | AZOBR_RS01195 | | RNA methyltransferase | 0.52 | AZOBR_RS25660 | | amidohydrolase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.13 | MPMX19_02196 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | MPMX19_02772 | | N-acetylcysteine deacetylase | low | > 112 |
| Fusobacterium nucleatum SB010 | 0.13 | HUW76_01255 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.32 | HUW76_04375 | | amidohydrolase | low | > 35 |
| Rhodospirillum rubrum S1H | 0.12 | Rru_A2107 | | 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) | 0.47 | Rru_A2871 | | Peptidase M20D, amidohydrolase (NCBI) | — | — |
| Rhizobium sp. OAE497 | 0.12 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | 0.50 | ABIE40_RS17715 | | M20 aminoacylase family protein | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.12 | SMc00974 | | RNA methyltransferase | 0.48 | SMc00682 | | hippurate hydrolase | low | > 103 |
| Bosea sp. OAE506 | 0.12 | ABIE41_RS22255 | | RNA methyltransferase | 0.48 | ABIE41_RS23495 | | M20 aminoacylase family protein | low | > 77 |
| Rhodopseudomonas palustris CGA009 | 0.11 | TX73_004885 | | methyltransferase | 0.47 | TX73_013705 | | M20 family metallopeptidase | low | > 86 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.11 | CA265_RS25340 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.33 | CA265_RS23900 | | N-acyl-L-amino acid amidohydrolase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.11 | A4249_RS08425 | | class I SAM-dependent RNA methyltransferase | 0.29 | A4249_RS11980 | | amidohydrolase | low | > 48 |
| Bifidobacterium breve UCC2003 | 0.10 | BBR_RS16615 | | class I SAM-dependent RNA methyltransferase | 0.29 | BBR_RS14460 | | amidohydrolase | low | > 34 |
| Caulobacter crescentus NA1000 | 0.08 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.26 | CCNA_02540 | | N-acyl-L-amino acid amidohydrolase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.08 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.26 | CCNA_02540 | | N-acyl-L-amino acid amidohydrolase | low | > 67 |
Not shown: 40 genomes with orthologs for ABZR87_RS10885 only; 3 genomes with orthologs for ABZR87_RS02065 only