Conservation of cofitness between Sama_2008 and Sama_3279 in Shewanella amazonensis SB2B

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_2008 cystathionine beta-lyase (RefSeq) 1.0 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.82 16
Shewanella oneidensis MR-1 0.83 SO2191 metC cystathionine beta-lyase (NCBI ptt file) 0.89 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.96 5
Shewanella sp. ANA-3 0.82 Shewana3_2414 cystathionine beta-lyase (RefSeq) 0.90 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.91 9
Shewanella loihica PV-4 0.82 Shew_1789 cystathionine beta-lyase (RefSeq) 0.89 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.97 8
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_08400 cystathionine beta-lyase 0.79 CSW01_00140 dihydroxy-acid dehydratase low > 62
Dickeya dadantii 3937 0.55 DDA3937_RS01815 cystathionine beta-lyase 0.78 DDA3937_RS20155 dihydroxy-acid dehydratase 0.88 24
Dickeya dianthicola 67-19 0.55 HGI48_RS01710 cystathionine beta-lyase 0.78 HGI48_RS20295 dihydroxy-acid dehydratase low > 71
Dickeya dianthicola ME23 0.55 DZA65_RS01785 cystathionine beta-lyase 0.78 DZA65_RS21335 dihydroxy-acid dehydratase 0.95 3
Pectobacterium carotovorum WPP14 0.54 HER17_RS19690 cystathionine beta-lyase 0.80 HER17_RS01075 dihydroxy-acid dehydratase 0.96 17
Serratia liquefaciens MT49 0.53 IAI46_21725 cystathionine beta-lyase 0.80 IAI46_24345 dihydroxy-acid dehydratase low > 86
Rahnella sp. WP5 0.52 EX31_RS08025 cystathionine beta-lyase 0.76 EX31_RS15005 dihydroxy-acid dehydratase 0.40 88
Escherichia coli ECRC98 0.52 JDDGAC_22595 metC cystathionine beta-lyase 0.80 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Escherichia coli Nissle 1917 0.52 ECOLIN_RS17315 cystathionine beta-lyase 0.80 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Escherichia fergusonii Becca 0.52 EFB2_00802 Cystathionine beta-lyase MetC 0.80 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Escherichia coli ECRC101 0.52 OKFHMN_18960 metC cystathionine beta-lyase 0.80 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC102 0.52 NIAGMN_16725 metC cystathionine beta-lyase 0.80 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF3120 Cystathionine beta-lyase (EC 4.4.1.8) 0.79 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Escherichia coli ECRC99 0.52 KEDOAH_09185 metC cystathionine beta-lyase 0.80 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.52 MCAODC_09475 metC cystathionine beta-lyase 0.80 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC62 0.52 BNILDI_00780 metC cystathionine beta-lyase 0.80 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_00693 Cystathionine beta-lyase MetC 0.80 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli ECOR38 0.52 HEPCGN_17825 metC cystathionine beta-lyase 0.80 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia coli BL21 0.52 ECD_02881 cystathionine beta-lyase, PLP-dependent 0.80 ECD_03649 dihydroxyacid dehydratase low > 60
Escherichia coli ECOR27 0.52 NOLOHH_10735 metC cystathionine beta-lyase 0.80 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia coli BW25113 0.51 b3008 metC cystathionine beta-lyase (NCBI) 0.80 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.93 13
Klebsiella michiganensis M5al 0.51 BWI76_RS24285 cystathionine beta-lyase 0.79 BWI76_RS00975 dihydroxy-acid dehydratase 0.89 19
Enterobacter asburiae PDN3 0.51 EX28DRAFT_3046 cystathionine beta-lyase, bacterial 0.79 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.95 2
Enterobacter sp. TBS_079 0.50 MPMX20_03852 Cystathionine beta-lyase MetC 0.79 MPMX20_04499 Dihydroxy-acid dehydratase 0.93 12
Sphingomonas koreensis DSMZ 15582 0.50 Ga0059261_1388 cystathionine beta-lyase, bacterial 0.29 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase low > 68
Magnetospirillum magneticum AMB-1 0.50 AMB_RS06585 cystathionine beta-lyase 0.72 AMB_RS12770 dihydroxy-acid dehydratase — —
Erwinia tracheiphila SCR3 0.49 LU632_RS20545 metC cystathionine beta-lyase 0.78 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.93 3
Rhodopseudomonas palustris CGA009 0.47 TX73_013235 cystathionine beta-lyase 0.72 TX73_007515 dihydroxy-acid dehydratase — —
Pantoea sp. MT58 0.47 IAI47_03215 cystathionine beta-lyase 0.79 IAI47_01035 dihydroxy-acid dehydratase low > 76
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_24330 cystathionine beta-lyase 0.74 AO353_08345 dihydroxy-acid dehydratase low > 101
Rhodospirillum rubrum S1H 0.46 Rru_A1613 Cystathionine beta-lyase (NCBI) 0.71 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) low > 58
Rhizobium sp. OAE497 0.45 ABIE40_RS08820 cystathionine beta-lyase 0.73 ABIE40_RS08005 dihydroxy-acid dehydratase low > 107
Azospirillum brasilense Sp245 0.45 AZOBR_RS08650 cystathionine beta-lyase 0.73 AZOBR_RS15015 dihydroxy-acid dehydratase low > 97
Sinorhizobium meliloti 1021 0.45 SMc02117 cystathionine beta-lyase 0.73 SMc04045 dihydroxy-acid dehydratase 0.63 24
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS11250 cystathionine beta-lyase 0.74 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Agrobacterium fabrum C58 0.43 Atu1575 cystathionine beta lyase 0.72 Atu1918 dihydroxy-acid dehydratase — —
Variovorax sp. OAS795 0.43 ABID97_RS22430 cystathionine beta-lyase 0.31 ABID97_RS17500 dihydroxy-acid dehydratase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5026 Cystathionine beta-lyase (EC 4.4.1.8) 0.66 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Azospirillum sp. SherDot2 0.42 MPMX19_01339 Cystathionine beta-lyase MetC 0.74 MPMX19_05356 Dihydroxy-acid dehydratase — —
Variovorax sp. SCN45 0.41 GFF1749 Cystathionine beta-lyase (EC 4.4.1.8) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_0607 cystathionine beta-lyase 0.74 Psyr_0469 dihydroxyacid dehydratase 0.28 59
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_0607 cystathionine beta-lyase 0.74 Psyr_0469 dihydroxyacid dehydratase low > 86
Ralstonia solanacearum PSI07 0.39 RPSI07_RS02185 cystathionine beta-lyase 0.29 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS20555 cystathionine beta-lyase 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Ralstonia solanacearum UW163 0.38 UW163_RS18620 cystathionine beta-lyase 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS30610 cystathionine beta-lyase 0.29 RR42_RS16210 dihydroxy-acid dehydratase — —
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS22165 cystathionine beta-lyase 0.72 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_00859 cystathionine beta-lyase 0.74 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_01491 cystathionine beta-lyase 0.71 CCNA_03139 dihydroxy-acid dehydratase low > 67
Caulobacter crescentus NA1000 0.37 CCNA_01491 cystathionine beta-lyase 0.71 CCNA_03139 dihydroxy-acid dehydratase low > 66
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS09190 cystathionine beta-lyase 0.72 BPHYT_RS10100 dihydroxy-acid dehydratase low > 109
Castellaniella sp019104865 MT123 0.36 ABCV34_RS12385 PLP-dependent aspartate aminotransferase family protein 0.70 ABCV34_RS14810 dihydroxy-acid dehydratase low > 48
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS14995 cystathionine beta-lyase 0.71 HSERO_RS02650 dihydroxy-acid dehydratase low > 78
Ralstonia solanacearum GMI1000 0.34 RS_RS08260 cystathionine beta-lyase 0.29 RS_RS12105 dihydroxy-acid dehydratase — —
Bosea sp. OAE506 0.33 ABIE41_RS01480 cystathionine beta-lyase 0.29 ABIE41_RS15690 dihydroxy-acid dehydratase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS05585 cystathionine beta-lyase 0.24 A4249_RS10030 dihydroxy-acid dehydratase low > 48
Acidovorax sp. GW101-3H11 0.26 Ac3H11_4146 Cystathionine beta-lyase (EC 4.4.1.8) 0.74 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 79
Acinetobacter radioresistens SK82 0.24 MPMX26_02724 Cystathionine beta-lyase 0.29 MPMX26_03019 Dihydroxy-acid dehydratase low > 36

Not shown: 0 genomes with orthologs for Sama_2008 only; 40 genomes with orthologs for Sama_3279 only