Conservation of cofitness between Sama_2008 and Sama_3169 in Shewanella amazonensis SB2B

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_2008 cystathionine beta-lyase (RefSeq) 1.0 Sama_3169 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.82 18
Shewanella oneidensis MR-1 0.83 SO2191 metC cystathionine beta-lyase (NCBI ptt file) 0.92 SO4054 metF 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) 0.98 2
Shewanella sp. ANA-3 0.82 Shewana3_2414 cystathionine beta-lyase (RefSeq) 0.92 Shewana3_3612 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.92 6
Shewanella loihica PV-4 0.82 Shew_1789 cystathionine beta-lyase (RefSeq) 0.91 Shew_0522 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.98 2
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_08400 cystathionine beta-lyase 0.77 CSW01_13560 methylenetetrahydrofolate reductase low > 62
Dickeya dadantii 3937 0.55 DDA3937_RS01815 cystathionine beta-lyase 0.76 DDA3937_RS00960 methylenetetrahydrofolate reductase low > 74
Dickeya dianthicola 67-19 0.55 HGI48_RS01710 cystathionine beta-lyase 0.76 HGI48_RS20415 methylenetetrahydrofolate reductase low > 71
Dickeya dianthicola ME23 0.55 DZA65_RS01785 cystathionine beta-lyase 0.76 DZA65_RS21460 methylenetetrahydrofolate reductase 0.75 52
Pectobacterium carotovorum WPP14 0.54 HER17_RS19690 cystathionine beta-lyase 0.74 HER17_RS00950 methylenetetrahydrofolate reductase low > 75
Serratia liquefaciens MT49 0.53 IAI46_21725 cystathionine beta-lyase 0.75 IAI46_24530 methylenetetrahydrofolate reductase low > 86
Rahnella sp. WP5 0.52 EX31_RS08025 cystathionine beta-lyase 0.76 EX31_RS14205 methylenetetrahydrofolate reductase low > 89
Escherichia coli ECRC99 0.52 KEDOAH_09185 metC cystathionine beta-lyase 0.76 KEDOAH_14495 metF methylenetetrahydrofolate reductase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF3120 Cystathionine beta-lyase (EC 4.4.1.8) 0.77 GFF2329 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) low > 78
Escherichia coli ECRC101 0.52 OKFHMN_18960 metC cystathionine beta-lyase 0.76 OKFHMN_13665 metF methylenetetrahydrofolate reductase
Escherichia coli Nissle 1917 0.52 ECOLIN_RS17315 cystathionine beta-lyase 0.76 ECOLIN_RS22760 methylenetetrahydrofolate reductase low > 52
Escherichia coli ECRC101 0.52 MCAODC_09475 metC cystathionine beta-lyase 0.76 MCAODC_04165 metF methylenetetrahydrofolate reductase
Escherichia coli ECRC98 0.52 JDDGAC_22595 metC cystathionine beta-lyase 0.76 JDDGAC_17290 metF methylenetetrahydrofolate reductase
Escherichia fergusonii Becca 0.52 EFB2_00802 Cystathionine beta-lyase MetC 0.76 EFB2_04672 5,10-methylenetetrahydrofolate reductase low > 86
Escherichia coli ECRC102 0.52 NIAGMN_16725 metC cystathionine beta-lyase 0.76 NIAGMN_11420 metF methylenetetrahydrofolate reductase
Escherichia coli ECOR38 0.52 HEPCGN_17825 metC cystathionine beta-lyase 0.76 HEPCGN_12310 metF methylenetetrahydrofolate reductase low > 85
Escherichia coli ECOR27 0.52 NOLOHH_10735 metC cystathionine beta-lyase 0.76 NOLOHH_05810 metF methylenetetrahydrofolate reductase low > 57
Escherichia coli BL21 0.52 ECD_02881 cystathionine beta-lyase, PLP-dependent 0.76 ECD_03827 5,10-methylenetetrahydrofolate reductase low > 60
Escherichia coli ECRC62 0.52 BNILDI_00780 metC cystathionine beta-lyase 0.76 BNILDI_05725 metF methylenetetrahydrofolate reductase
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_00693 Cystathionine beta-lyase MetC 0.76 OHPLBJKB_04109 5,10-methylenetetrahydrofolate reductase low > 73
Escherichia coli BW25113 0.51 b3008 metC cystathionine beta-lyase (NCBI) 0.76 b3941 metF 5,10-methylenetetrahydrofolate reductase (NCBI) 0.93 17
Klebsiella michiganensis M5al 0.51 BWI76_RS24285 cystathionine beta-lyase 0.76 BWI76_RS00805 5,10-methylenetetrahydrofolate reductase 0.91 12
Enterobacter asburiae PDN3 0.51 EX28DRAFT_3046 cystathionine beta-lyase, bacterial 0.76 EX28DRAFT_4413 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.56 68
Enterobacter sp. TBS_079 0.50 MPMX20_03852 Cystathionine beta-lyase MetC 0.75 MPMX20_04529 5,10-methylenetetrahydrofolate reductase 0.79 58
Sphingomonas koreensis DSMZ 15582 0.50 Ga0059261_1388 cystathionine beta-lyase, bacterial 0.54 Ga0059261_0992 5,10-methylenetetrahydrofolate reductase, prokaryotic form low > 68
Magnetospirillum magneticum AMB-1 0.50 AMB_RS06585 cystathionine beta-lyase 0.54 AMB_RS02230 methylenetetrahydrofolate reductase
Erwinia tracheiphila SCR3 0.49 LU632_RS20545 metC cystathionine beta-lyase 0.75 LU632_RS19630 metF methylenetetrahydrofolate reductase low > 74
Rhodopseudomonas palustris CGA009 0.47 TX73_013235 cystathionine beta-lyase 0.46 TX73_019175 methylenetetrahydrofolate reductase [NAD(P)H] low > 86
Pantoea sp. MT58 0.47 IAI47_03215 cystathionine beta-lyase 0.75 IAI47_00890 methylenetetrahydrofolate reductase low > 76
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_24330 cystathionine beta-lyase 0.37 AO353_08015 5,10-methylenetetrahydrofolate reductase low > 101
Rhodospirillum rubrum S1H 0.46 Rru_A1613 Cystathionine beta-lyase (NCBI) 0.51 Rru_A1530 5,10-methylenetetrahydrofolate reductase (NCBI) low > 58
Rhizobium sp. OAE497 0.45 ABIE40_RS08820 cystathionine beta-lyase 0.41 ABIE40_RS11950 methylenetetrahydrofolate reductase [NAD(P)H] low > 107
Azospirillum brasilense Sp245 0.45 AZOBR_RS08650 cystathionine beta-lyase 0.54 AZOBR_RS09540 5 10-methylenetetrahydrofolate reductase 0.76 28
Sinorhizobium meliloti 1021 0.45 SMc02117 cystathionine beta-lyase 0.35 SMc01843 5,10-methylenetetrahydrofolate reductase 0.65 12
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS11250 cystathionine beta-lyase 0.36 ABZR87_RS04865 methylenetetrahydrofolate reductase [NAD(P)H] 0.33 33
Agrobacterium fabrum C58 0.43 Atu1575 cystathionine beta lyase 0.38 Atu2123 methylenetetrahydrofolate reductase low > 89
Variovorax sp. OAS795 0.43 ABID97_RS22430 cystathionine beta-lyase 0.31 ABID97_RS25015 methylenetetrahydrofolate reductase [NAD(P)H] low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5026 Cystathionine beta-lyase (EC 4.4.1.8) 0.33 GFF1692 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Azospirillum sp. SherDot2 0.42 MPMX19_01339 Cystathionine beta-lyase MetC 0.53 MPMX19_00635 5,10-methylenetetrahydrofolate reductase low > 112
Variovorax sp. SCN45 0.41 GFF1749 Cystathionine beta-lyase (EC 4.4.1.8) 0.31 GFF2055 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) low > 127
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_0607 cystathionine beta-lyase 0.35 Psyr_0459 5,10-methylenetetrahydrofolate reductase low > 86
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_0607 cystathionine beta-lyase 0.35 Psyr_0459 5,10-methylenetetrahydrofolate reductase low > 86
Ralstonia solanacearum PSI07 0.39 RPSI07_RS02185 cystathionine beta-lyase 0.36 RPSI07_RS23495 methylenetetrahydrofolate reductase [NAD(P)H] low > 81
Ralstonia solanacearum UW163 0.38 UW163_RS18620 cystathionine beta-lyase 0.36 UW163_RS03705 methylenetetrahydrofolate reductase [NAD(P)H]
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS20555 cystathionine beta-lyase 0.36 RALBFv3_RS09875 methylenetetrahydrofolate reductase [NAD(P)H] low > 76
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS30610 cystathionine beta-lyase 0.36 RR42_RS01385 5,10-methylenetetrahydrofolate reductase low > 128
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS22165 cystathionine beta-lyase 0.37 QEN71_RS28715 methylenetetrahydrofolate reductase [NAD(P)H] low > 153
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_00859 cystathionine beta-lyase 0.36 H281DRAFT_05801 5,10-methylenetetrahydrofolate reductase (NAD(P)) low > 103
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_01491 cystathionine beta-lyase 0.47 CCNA_02224 methylenetetrahydrofolate reductase low > 67
Caulobacter crescentus NA1000 0.37 CCNA_01491 cystathionine beta-lyase 0.47 CCNA_02224 methylenetetrahydrofolate reductase low > 66
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS09190 cystathionine beta-lyase 0.35 BPHYT_RS18705 5,10-methylenetetrahydrofolate reductase low > 109
Castellaniella sp019104865 MT123 0.36 ABCV34_RS12385 PLP-dependent aspartate aminotransferase family protein 0.34 ABCV34_RS13550 methylenetetrahydrofolate reductase [NAD(P)H] low > 48
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS14995 cystathionine beta-lyase 0.32 HSERO_RS21425 5,10-methylenetetrahydrofolate reductase low > 78
Ralstonia solanacearum GMI1000 0.34 RS_RS08260 cystathionine beta-lyase 0.36 RS_RS00460 methylenetetrahydrofolate reductase [NAD(P)H] low > 80
Bosea sp. OAE506 0.33 ABIE41_RS01480 cystathionine beta-lyase 0.51 ABIE41_RS12475 methylenetetrahydrofolate reductase [NAD(P)H] low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS05585 cystathionine beta-lyase 0.46 A4249_RS07925 methylenetetrahydrofolate reductase [NAD(P)H] low > 48
Acidovorax sp. GW101-3H11 0.26 Ac3H11_4146 Cystathionine beta-lyase (EC 4.4.1.8) 0.33 Ac3H11_3045 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) low > 79
Acinetobacter radioresistens SK82 0.24 MPMX26_02724 Cystathionine beta-lyase 0.31 MPMX26_01002 5,10-methylenetetrahydrofolate reductase low > 36

Not shown: 0 genomes with orthologs for Sama_2008 only; 38 genomes with orthologs for Sama_3169 only