Conservation of cofitness between Sama_2008 and Sama_0337 in Shewanella amazonensis SB2B

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_2008 cystathionine beta-lyase (RefSeq) 1.0 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.83 8
Shewanella oneidensis MR-1 0.83 SO2191 metC cystathionine beta-lyase (NCBI ptt file) 0.85 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.95 9
Shewanella sp. ANA-3 0.82 Shewana3_2414 cystathionine beta-lyase (RefSeq) 0.86 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.91 8
Shewanella loihica PV-4 0.82 Shew_1789 cystathionine beta-lyase (RefSeq) 0.86 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.97 5
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_08400 cystathionine beta-lyase 0.70 CSW01_12605 3-isopropylmalate dehydratase large subunit low > 62
Dickeya dadantii 3937 0.55 DDA3937_RS01815 cystathionine beta-lyase 0.71 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.73 70
Dickeya dianthicola 67-19 0.55 HGI48_RS01710 cystathionine beta-lyase 0.70 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.72 50
Dickeya dianthicola ME23 0.55 DZA65_RS01785 cystathionine beta-lyase 0.70 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.88 10
Pectobacterium carotovorum WPP14 0.54 HER17_RS19690 cystathionine beta-lyase 0.70 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.96 18
Serratia liquefaciens MT49 0.53 IAI46_21725 cystathionine beta-lyase 0.71 IAI46_03345 3-isopropylmalate dehydratase large subunit low > 86
Rahnella sp. WP5 0.52 EX31_RS08025 cystathionine beta-lyase 0.72 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.43 38
Escherichia coli Nissle 1917 0.52 ECOLIN_RS17315 cystathionine beta-lyase 0.73 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit low > 52
Escherichia coli ECRC101 0.52 OKFHMN_18960 metC cystathionine beta-lyase 0.72 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC101 0.52 MCAODC_09475 metC cystathionine beta-lyase 0.72 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC99 0.52 KEDOAH_09185 metC cystathionine beta-lyase 0.72 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC102 0.52 NIAGMN_16725 metC cystathionine beta-lyase 0.72 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF3120 Cystathionine beta-lyase (EC 4.4.1.8) 0.72 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 78
Escherichia fergusonii Becca 0.52 EFB2_00802 Cystathionine beta-lyase MetC 0.73 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.38 28
Escherichia coli ECRC98 0.52 JDDGAC_22595 metC cystathionine beta-lyase 0.72 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC62 0.52 BNILDI_00780 metC cystathionine beta-lyase 0.73 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli BL21 0.52 ECD_02881 cystathionine beta-lyase, PLP-dependent 0.73 ECD_00074 3-isopropylmalate dehydratase large subunit low > 60
Escherichia coli ECOR38 0.52 HEPCGN_17825 metC cystathionine beta-lyase 0.73 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 85
Escherichia coli ECOR27 0.52 NOLOHH_10735 metC cystathionine beta-lyase 0.73 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_00693 Cystathionine beta-lyase MetC 0.73 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit low > 73
Escherichia coli BW25113 0.51 b3008 metC cystathionine beta-lyase (NCBI) 0.73 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.94 7
Klebsiella michiganensis M5al 0.51 BWI76_RS24285 cystathionine beta-lyase 0.72 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.92 7
Enterobacter asburiae PDN3 0.51 EX28DRAFT_3046 cystathionine beta-lyase, bacterial 0.72 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.92 6
Enterobacter sp. TBS_079 0.50 MPMX20_03852 Cystathionine beta-lyase MetC 0.72 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.95 4
Magnetospirillum magneticum AMB-1 0.50 AMB_RS06585 cystathionine beta-lyase 0.61 AMB_RS20560 3-isopropylmalate dehydratase large subunit
Sphingomonas koreensis DSMZ 15582 0.50 Ga0059261_1388 cystathionine beta-lyase, bacterial 0.55 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit low > 68
Erwinia tracheiphila SCR3 0.49 LU632_RS20545 metC cystathionine beta-lyase 0.68 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.86 14
Rhodopseudomonas palustris CGA009 0.47 TX73_013235 cystathionine beta-lyase 0.61 TX73_001245 3-isopropylmalate dehydratase large subunit
Pantoea sp. MT58 0.47 IAI47_03215 cystathionine beta-lyase 0.72 IAI47_16010 3-isopropylmalate dehydratase large subunit low > 76
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_24330 cystathionine beta-lyase 0.59 AO353_20620 isopropylmalate isomerase low > 101
Rhodospirillum rubrum S1H 0.46 Rru_A1613 Cystathionine beta-lyase (NCBI) 0.63 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) low > 58
Rhizobium sp. OAE497 0.45 ABIE40_RS08820 cystathionine beta-lyase 0.60 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit low > 107
Azospirillum brasilense Sp245 0.45 AZOBR_RS08650 cystathionine beta-lyase 0.62 AZOBR_RS03545 isopropylmalate isomerase 0.90 12
Sinorhizobium meliloti 1021 0.45 SMc02117 cystathionine beta-lyase 0.61 SMc03823 isopropylmalate isomerase large subunit 0.63 26
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS11250 cystathionine beta-lyase 0.59 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.32 42
Agrobacterium fabrum C58 0.43 Atu1575 cystathionine beta lyase 0.61 Atu2709 3-isopropylmalate dehydratase, large subunit 0.31 6
Variovorax sp. OAS795 0.43 ABID97_RS22430 cystathionine beta-lyase 0.58 ABID97_RS08465 3-isopropylmalate dehydratase large subunit
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5026 Cystathionine beta-lyase (EC 4.4.1.8) 0.59 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 90
Azospirillum sp. SherDot2 0.42 MPMX19_01339 Cystathionine beta-lyase MetC 0.64 MPMX19_01998 3-isopropylmalate dehydratase large subunit low > 112
Variovorax sp. SCN45 0.41 GFF1749 Cystathionine beta-lyase (EC 4.4.1.8) 0.58 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 127
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_0607 cystathionine beta-lyase 0.60 Psyr_1983 3-isopropylmalate dehydratase, large subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_0607 cystathionine beta-lyase 0.60 Psyr_1983 3-isopropylmalate dehydratase, large subunit low > 86
Ralstonia solanacearum PSI07 0.39 RPSI07_RS02185 cystathionine beta-lyase 0.59 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit low > 81
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS20555 cystathionine beta-lyase 0.59 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit low > 76
Ralstonia solanacearum UW163 0.38 UW163_RS18620 cystathionine beta-lyase 0.59 UW163_RS11105 3-isopropylmalate dehydratase large subunit
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS30610 cystathionine beta-lyase 0.60 RR42_RS14400 isopropylmalate isomerase low > 128
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS22165 cystathionine beta-lyase 0.59 QEN71_RS17605 3-isopropylmalate dehydratase large subunit low > 153
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_00859 cystathionine beta-lyase 0.59 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit low > 103
Caulobacter crescentus NA1000 0.37 CCNA_01491 cystathionine beta-lyase 0.57 CCNA_00196 3-isopropylmalate dehydratase large subunit low > 66
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_01491 cystathionine beta-lyase 0.57 CCNA_00196 3-isopropylmalate dehydratase large subunit low > 67
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS09190 cystathionine beta-lyase 0.59 BPHYT_RS33915 isopropylmalate isomerase low > 109
Castellaniella sp019104865 MT123 0.36 ABCV34_RS12385 PLP-dependent aspartate aminotransferase family protein 0.61 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit low > 48
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS14995 cystathionine beta-lyase 0.59 HSERO_RS16515 isopropylmalate isomerase low > 78
Ralstonia solanacearum GMI1000 0.34 RS_RS08260 cystathionine beta-lyase 0.59 RS_RS10000 3-isopropylmalate dehydratase large subunit low > 80
Bosea sp. OAE506 0.33 ABIE41_RS01480 cystathionine beta-lyase 0.59 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS05585 cystathionine beta-lyase 0.51 A4249_RS10005 3-isopropylmalate dehydratase large subunit low > 48
Acidovorax sp. GW101-3H11 0.26 Ac3H11_4146 Cystathionine beta-lyase (EC 4.4.1.8) 0.58 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 79
Acinetobacter radioresistens SK82 0.24 MPMX26_02724 Cystathionine beta-lyase 0.58 MPMX26_00345 3-isopropylmalate dehydratase large subunit low > 36

Not shown: 0 genomes with orthologs for Sama_2008 only; 41 genomes with orthologs for Sama_0337 only