Conservation of cofitness between Shew_2934 and Shew_1343 in Shewanella loihica PV-4

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 1.0 Shew_1343 response regulator receiver modulated CheW protein (RefSeq) 0.61 7
Shewanella amazonensis SB2B 0.94 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.92 Sama_2320 chemotaxis protein CheV (RefSeq) low > 62
Shewanella sp. ANA-3 0.93 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.93 Shewana3_1319 response regulator receiver modulated CheW protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.93 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.92 SO3252 cheV-3 chemotaxis protein CheV (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.81 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.64 CSW01_11235 chemotaxis protein CheV low > 62
Dickeya dianthicola 67-19 0.81 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.29 HGI48_RS07815 chemotaxis protein CheW — —
Pectobacterium carotovorum WPP14 0.81 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.28 HER17_RS13880 chemotaxis protein low > 75
Dickeya dianthicola ME23 0.80 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.29 DZA65_RS08410 chemotaxis protein CheV low > 75
Dickeya dadantii 3937 0.80 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.29 DDA3937_RS08090 chemotaxis protein CheV — —
Rahnella sp. WP5 0.80 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.28 EX31_RS11205 chemotaxis protein CheV low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.27 GFF1876 Chemotaxis protein CheV (EC 2.7.3.-) low > 78
Enterobacter asburiae PDN3 0.79 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.29 EX28DRAFT_0335 Chemotaxis signal transduction protein — —
Enterobacter sp. TBS_079 0.79 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.30 MPMX20_03205 Chemotaxis protein CheV low > 85
Alteromonas macleodii MIT1002 0.76 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.72 MIT1002_01037 Chemotaxis protein CheV — —
Marinobacter adhaerens HP15 0.61 HP15_604 conserved hypothetical protein CHP00246 0.53 HP15_1547 response regulator receiver modulated CheW protein low > 73
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_4366 Protein of unknown function DUF163 0.58 Psyr_3486 Response regulator receiver:CheW-like protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_4366 Protein of unknown function DUF163 0.58 Psyr_3486 Response regulator receiver:CheW-like protein low > 86
Pseudomonas putida KT2440 0.60 PP_4808 23S rRNA m3psi1915 methyltransferase 0.57 PP_4393 putative chemotaxis protein low > 96
Pseudomonas simiae WCS417 0.60 PS417_24730 50S rRNA methyltransferase 0.58 PS417_21580 chemotaxis protein CheW — —
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.58 PFLU_RS23190 chemotaxis protein CheV low > 109
Pseudomonas fluorescens SBW25 0.60 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.58 PFLU_RS23190 chemotaxis protein CheV low > 109
Pseudomonas sp. RS175 0.60 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.57 PFR28_03256 Chemotaxis protein CheV low > 88
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_06480 50S rRNA methyltransferase 0.57 AO353_02870 chemotaxis protein CheW low > 101
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.58 PfGW456L13_1999 Chemotaxis protein CheV (EC 2.7.3.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_15305 50S rRNA methyltransferase 0.58 AO356_18905 chemotaxis protein CheW low > 104
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.57 Pf6N2E2_5692 Chemotaxis protein CheV (EC 2.7.3.-) low > 103
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.58 Pf1N1B4_3470 Chemotaxis protein CheV (EC 2.7.3.-) — —
Pseudomonas sp. S08-1 0.59 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.60 OH686_02985 Chemotaxis protein CheV low > 80
Pseudomonas stutzeri RCH2 0.57 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.54 Psest_2970 Chemotaxis signal transduction protein low > 67
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 OKGIIK_02645 Chemotaxis protein low > 52
Rhodanobacter denitrificans MT42 0.52 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 LRK55_RS13140 chemotaxis protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 LRK54_RS13400 chemotaxis protein low > 59
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS17780 50S rRNA methyltransferase 0.30 HSERO_RS09765 chemotaxis protein CheV low > 78
Ralstonia solanacearum PSI07 0.49 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 RPSI07_RS02100 chemotaxis protein CheV low > 81
Ralstonia solanacearum GMI1000 0.49 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 RS_RS19975 chemotaxis protein CheV — —
Lysobacter sp. OAE881 0.49 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 ABIE51_RS16665 chemotaxis protein low > 62
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 ABZR87_RS21330 chemotaxis protein low > 80
Castellaniella sp019104865 MT123 0.48 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 ABCV34_RS04825 chemotaxis protein low > 48
Acidovorax sp. GW101-3H11 0.48 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH 0.31 Ac3H11_3513 Chemotaxis protein CheV (EC 2.7.3.-) low > 79
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 RALBFv3_RS20690 chemotaxis protein CheV low > 76
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.1876.1 LSU m3Psi1915 methyltransferase RlmH 0.46 Xcc-8004.2777.1 Chemotaxis protein CheV (EC 2.7.3.-) — —
Dechlorosoma suillum PS 0.44 Dsui_0451 hypothetical protein 0.35 Dsui_1717 chemotaxis signal transduction protein low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU1254 conserved hypothetical protein (TIGR) 0.23 DVU0056 cheV-1 chemotaxis protein CheV (TIGR) low > 55

Not shown: 52 genomes with orthologs for Shew_2934 only; 1 genomes with orthologs for Shew_1343 only