Conservation of cofitness between Dshi_1938 and Dshi_3348 in Dinoroseobacter shibae DFL-12

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dinoroseobacter shibae DFL-12 1.0 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) 1.0 Dshi_3348 Rhodanese domain protein (RefSeq) 0.44 7
Phaeobacter inhibens DSM 17395 0.72 PGA1_c05650 tRNA pseudouridine synthase A 0.71 PGA1_c32160 Predicted sulfurtransferase low > 62
Rhizobium sp. OAE497 0.53 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA 0.56 ABIE40_RS16740 rhodanese-related sulfurtransferase low > 107
Agrobacterium fabrum C58 0.50 Atu0368 tRNA pseudouridine synthase I 0.53 Atu4491 hypothetical protein low > 89
Caulobacter crescentus NA1000 0.50 CCNA_00280 tRNA pseudouridine synthase A 0.53 CCNA_01113 rhodanese-related sulfurtransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00280 tRNA pseudouridine synthase A 0.53 CCNA_01113 rhodanese-related sulfurtransferase low > 67
Sinorhizobium meliloti 1021 0.49 SMc01099 tRNA pseudouridine synthase A 0.52 SMc03156 hypothetical protein low > 103
Sphingomonas koreensis DSMZ 15582 0.48 Ga0059261_0647 tRNA pseudouridine(38-40) synthase 0.55 Ga0059261_3413 Predicted sulfurtransferase low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA 0.52 A4249_RS05860 rhodanese-related sulfurtransferase low > 48
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA 0.29 QEN71_RS24475 sulfurtransferase 0.61 142
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA 0.30 RALBFv3_RS03625 sulfurtransferase — —
Ralstonia solanacearum UW163 0.36 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA 0.30 UW163_RS10045 sulfurtransferase — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA 0.31 RPSI07_RS13605 sulfurtransferase low > 81
Ralstonia solanacearum GMI1000 0.35 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA 0.30 RS_RS11070 sulfurtransferase 0.40 39
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.31 ABZR87_RS15510 sulfurtransferase low > 80
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS14370 tRNA pseudouridine synthase A 0.33 RR42_RS04645 rhodanese superfamily protein — —
Paraburkholderia graminis OAS925 0.34 ABIE53_004807 tRNA pseudouridine38-40 synthase 0.30 ABIE53_001440 UPF0176 protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_06069 tRNA pseudouridine38-40 synthase 0.30 H281DRAFT_00310 UPF0176 protein low > 103
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS33885 tRNA pseudouridine synthase A 0.28 BPHYT_RS06165 rhodanese low > 109
Pseudomonas sp. S08-1 0.33 OH686_04450 tRNA pseudouridine(38-40) synthase 0.51 OH686_21035 Rhodanese domain protein UPF0176 low > 80
Alteromonas macleodii MIT1002 0.33 MIT1002_02529 tRNA pseudouridine synthase A 0.51 MIT1002_01995 putative rhodanese-related sulfurtransferase low > 70
Acidovorax sp. GW101-3H11 0.32 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.50 Ac3H11_905 Rhodanese domain protein UPF0176, cyanobacterial/alphaproteobacterial subgroup low > 79
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS16485 tRNA pseudouridine synthase A 0.31 HSERO_RS17830 rhodanese low > 78
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA 0.54 CSW01_06360 rhodanese domain-containing protein low > 62
Pseudomonas putida KT2440 0.31 PP_1994 tRNA pseudouridine (38-40)synthase 0.51 PP_1758 putative sulfurtransferase containing rhodanese-like domain low > 96
Shewanella loihica PV-4 0.30 Shew_2306 tRNA pseudouridine synthase A (RefSeq) 0.52 Shew_1781 hypothetical protein (RefSeq) — —
Pectobacterium carotovorum WPP14 0.30 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.21 HER17_RS08570 rhodanese-related sulfurtransferase low > 75
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_1483 pseudouridylate synthase I 0.53 B158DRAFT_1382 Predicted sulfurtransferase low > 40
Pseudomonas sp. RS175 0.29 PFR28_02817 tRNA pseudouridine synthase A 0.51 PFR28_00892 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.50 Pf1N1B4_364 Rhodanese domain protein UPF0176 low > 87
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.51 PfGW456L13_2163 Rhodanese domain protein UPF0176 low > 87
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.50 Pf6N2E2_2533 Rhodanese domain protein UPF0176 low > 103
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_21435 pseudouridine synthase 0.50 AO356_03530 hypothetical protein low > 104
Shewanella sp. ANA-3 0.29 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.53 Shewana3_2261 hypothetical protein (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_1662 tRNA pseudouridine synthase 0.50 Psyr_3658 Rhodanese-like protein 0.37 81
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_20660 pseudouridine synthase 0.51 AO353_02135 hypothetical protein low > 101
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.52 GFF4655 Rhodanese domain protein UPF0176, cyanobacterial/alphaproteobacterial subgroup low > 90
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_1662 tRNA pseudouridine synthase 0.50 Psyr_3658 Rhodanese-like protein low > 86
Pseudomonas stutzeri RCH2 0.28 Psest_2585 pseudouridylate synthase I 0.50 Psest_2679 Predicted sulfurtransferase low > 67
Pseudomonas fluorescens SBW25 0.28 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.51 PFLU_RS21155 rhodanese-related sulfurtransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.51 PFLU_RS21155 rhodanese-related sulfurtransferase 0.20 31
Marinobacter adhaerens HP15 0.28 HP15_1829 tRNA pseudouridine synthase A 0.54 HP15_2899 rhodanese sulfurtransferase low > 73
Pseudomonas simiae WCS417 0.28 PS417_18565 pseudouridine synthase 0.51 PS417_19160 hypothetical protein — —
Acinetobacter radioresistens SK82 0.27 MPMX26_00352 tRNA pseudouridine synthase A 0.47 MPMX26_00718 Thiosulfate sulfurtransferase GlpE low > 36
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA 0.29 LRK54_RS10250 sulfurtransferase low > 59
Rhodanobacter denitrificans MT42 0.25 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA 0.28 LRK55_RS09890 sulfurtransferase low > 63

Not shown: 55 genomes with orthologs for Dshi_1938 only; 1 genomes with orthologs for Dshi_3348 only