Conservation of cofitness between BT1374 and BT3717 in Bacteroides thetaiotaomicron VPI-5482

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 1.0 BT3717 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) 0.83 9
Bacteroides ovatus ATCC 8483 0.97 BACOVA_00215 diaminopimelate decarboxylase 0.97 BACOVA_03533 N-acetylornithine carbamoyltransferase 0.97 8
Bacteroides stercoris CC31F 0.88 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.96 HMPREF1181_RS03315 N-acetylornithine carbamoyltransferase 0.98 7
Phocaeicola vulgatus CL09T03C04 0.85 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.79 HMPREF1058_RS08640 acetylornithine carbamoyltransferase low > 67
Phocaeicola dorei CL03T12C01 0.84 ABI39_RS19950 diaminopimelate decarboxylase 0.79 ABI39_RS02870 acetylornithine carbamoyltransferase 0.57 58
Parabacteroides merdae CL09T00C40 0.67 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.87 HMPREF1078_RS10660 acetylornithine carbamoyltransferase 0.98 2
Pontibacter actiniarum KMM 6156, DSM 19842 0.57 CA264_02390 diaminopimelate decarboxylase 0.57 CA264_06240 acetylornithine carbamoyltransferase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS10180 diaminopimelate decarboxylase 0.54 ABZR88_RS15495 acetylornithine carbamoyltransferase — —
Pedobacter sp. GW460-11-11-14-LB5 0.54 CA265_RS09650 diaminopimelate decarboxylase 0.50 CA265_RS18520 acetylornithine carbamoyltransferase 0.87 27
Alteromonas macleodii MIT1002 0.36 MIT1002_00160 Diaminopimelate decarboxylase 0.14 MIT1002_00469 Ornithine carbamoyltransferase 0.77 47
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_05606 diaminopimelate decarboxylase 0.14 H281DRAFT_04119 ornithine carbamoyltransferase — —
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS17930 diaminopimelate decarboxylase 0.14 BPHYT_RS15915 ornithine carbamoyltransferase low > 109
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS28080 diaminopimelate decarboxylase 0.14 QEN71_RS02785 ornithine carbamoyltransferase 0.96 1
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.28 OKGIIK_09480 argF N-acetylornithine carbamoyltransferase low > 52
Paraburkholderia graminis OAS925 0.35 ABIE53_003749 diaminopimelate decarboxylase 0.14 ABIE53_003354 ornithine carbamoyltransferase — —
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS02640 diaminopimelate decarboxylase 0.14 ABZR87_RS00840 ornithine carbamoyltransferase — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS10250 diaminopimelate decarboxylase 0.14 RPSI07_RS12115 ornithine carbamoyltransferase — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS00950 diaminopimelate decarboxylase 0.15 HSERO_RS07185 Ornithine carbamoyltransferase (EC 2.1.3.3) (from data) — —
Lysobacter sp. OAE881 0.35 ABIE51_RS13675 diaminopimelate decarboxylase 0.30 ABIE51_RS13410 N-acetylornithine carbamoyltransferase low > 62
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS06990 diaminopimelate decarboxylase 0.13 RALBFv3_RS05185 ornithine carbamoyltransferase — —
Ralstonia solanacearum UW163 0.35 UW163_RS06625 diaminopimelate decarboxylase 0.13 UW163_RS08440 ornithine carbamoyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS12130 diaminopimelate decarboxylase 0.28 ABZR86_RS08730 N-acetylornithine carbamoyltransferase low > 74
Ralstonia solanacearum GMI1000 0.34 RS_RS14930 diaminopimelate decarboxylase 0.13 RS_RS12805 ornithine carbamoyltransferase — —
Dechlorosoma suillum PS 0.34 Dsui_1182 diaminopimelate decarboxylase 0.14 Dsui_3249 ornithine carbamoyltransferase — —
Agrobacterium fabrum C58 0.34 Atu3601 diaminopimelate decarboxylase 0.13 Atu0429 ornithine carbamoyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_02296 diaminopimelate decarboxylase 0.13 CCNA_02325 ornithine carbamoyltransferase — —
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS11485 diaminopimelate decarboxylase 0.28 LRK54_RS02415 N-acetylornithine carbamoyltransferase low > 59
Caulobacter crescentus NA1000 0.33 CCNA_02296 diaminopimelate decarboxylase 0.13 CCNA_02325 ornithine carbamoyltransferase — —
Rhodanobacter denitrificans MT42 0.33 LRK55_RS11215 diaminopimelate decarboxylase 0.28 LRK55_RS02170 N-acetylornithine carbamoyltransferase low > 63
Phaeobacter inhibens DSM 17395 0.33 PGA1_c03470 diaminopimelate decarboxylase LysA 0.16 PGA1_c24220 ornithine carbamoyltransferase ArgF — —
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.15 Ga0059261_3206 ornithine carbamoyltransferase 0.99 13
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS19050 diaminopimelate decarboxylase 0.14 RR42_RS17175 ornithine carbamoyltransferase — —
Variovorax sp. SCN45 0.32 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.13 GFF3926 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Variovorax sp. OAS795 0.32 ABID97_RS23305 diaminopimelate decarboxylase 0.14 ABID97_RS08630 ornithine carbamoyltransferase — —
Pseudomonas sp. RS175 0.32 PFR28_04375 Diaminopimelate decarboxylase 0.13 PFR28_03363 Ornithine carbamoyltransferase 1, anabolic — —
Pseudomonas stutzeri RCH2 0.32 Psest_3764 diaminopimelate decarboxylase 0.13 Psest_1291 ornithine carbamoyltransferase — —
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.12 PfGW456L13_1739 Ornithine carbamoyltransferase (EC 2.1.3.3) 0.89 17
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.13 GFF3419 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_09035 diaminopimelate decarboxylase 0.13 AO353_04155 ornithine carbamoyltransferase — —
Castellaniella sp019104865 MT123 0.31 ABCV34_RS12685 diaminopimelate decarboxylase 0.14 ABCV34_RS05380 ornithine carbamoyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.22 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.45 Echvi_3849 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) 0.88 27
Kangiella aquimarina DSM 16071 0.21 B158DRAFT_0272 pyridoxal-dependent decarboxylase, exosortase A system-associated 0.28 B158DRAFT_1975 Ornithine carbamoyltransferase — —
Enterobacter sp. TBS_079 0.19 MPMX20_03705 Diaminopimelate decarboxylase 0.11 MPMX20_00556 Ornithine carbamoyltransferase subunit F 0.77 39
Enterobacter asburiae PDN3 0.19 EX28DRAFT_2916 diaminopimelate decarboxylase 0.12 EX28DRAFT_3461 ornithine carbamoyltransferase 0.81 27
Escherichia fergusonii Becca 0.19 EFB2_01045 Diaminopimelate decarboxylase 0.12 EFB2_04281 Ornithine carbamoyltransferase subunit I low > 86
Escherichia coli Nissle 1917 0.19 ECOLIN_RS15930 diaminopimelate decarboxylase 0.12 ECOLIN_RS24665 ornithine carbamoyltransferase low > 52
Escherichia coli ECRC98 0.19 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.13 JDDGAC_15475 argF ornithine carbamoyltransferase — —
Escherichia coli ECOR38 0.19 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.12 HEPCGN_10025 argF ornithine carbamoyltransferase low > 85
Escherichia coli ECRC99 0.19 KEDOAH_08185 lysA diaminopimelate decarboxylase 0.13 KEDOAH_16320 argF ornithine carbamoyltransferase — —
Escherichia coli ECRC62 0.19 BNILDI_10310 lysA diaminopimelate decarboxylase 0.13 BNILDI_07425 argF ornithine carbamoyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_00891 Diaminopimelate decarboxylase 0.13 OHPLBJKB_03782 Ornithine carbamoyltransferase subunit I low > 73
Escherichia coli BL21 0.19 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.13 ECD_04120 ornithine carbamoyltransferase 1 low > 60
Escherichia coli BW25113 0.19 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.12 b4254 argI ornithine carbamoyltransferase 1 (NCBI) low > 76
Escherichia coli ECRC102 0.19 NIAGMN_17715 lysA diaminopimelate decarboxylase 0.13 NIAGMN_09685 argF ornithine carbamoyltransferase — —
Escherichia coli ECRC101 0.19 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.13 OKFHMN_11835 argF ornithine carbamoyltransferase — —
Escherichia coli ECRC101 0.19 MCAODC_10470 lysA diaminopimelate decarboxylase 0.13 MCAODC_02340 argF ornithine carbamoyltransferase — —
Escherichia coli ECOR27 0.19 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.13 NOLOHH_04090 argF ornithine carbamoyltransferase low > 57
Acidovorax sp. GW101-3H11 0.18 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.12 Ac3H11_1333 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Klebsiella michiganensis M5al 0.18 BWI76_RS23360 diaminopimelate decarboxylase 0.11 BWI76_RS03010 ornithine carbamoyltransferase 0.83 5
Pectobacterium carotovorum WPP14 0.18 HER17_RS03710 diaminopimelate decarboxylase 0.10 HER17_RS19500 ornithine carbamoyltransferase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.12 GFF940 Ornithine carbamoyltransferase (EC 2.1.3.3) low > 78

Not shown: 39 genomes with orthologs for BT1374 only; 1 genomes with orthologs for BT3717 only