Conservation of cofitness between b1982 and b4180 in Escherichia coli BW25113

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b1982 amn AMP nucleosidase (NCBI) 1.0 b4180 rlmB 23S rRNA (Gm2251)-methyltransferase (NCBI) 0.32 12
Escherichia coli ECRC101 1.00 OKFHMN_25180 amn AMP nucleosidase 1.00 OKFHMN_12215 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Escherichia coli ECRC102 1.00 NIAGMN_22685 amn AMP nucleosidase 1.00 NIAGMN_10065 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Escherichia coli ECRC62 1.00 BNILDI_14920 amn AMP nucleosidase 1.00 BNILDI_07010 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Escherichia coli BL21 1.00 ECD_01894 AMP nucleosidase 1.00 ECD_04047 23S rRNA mG2251 2'-O-ribose methyltransferase, SAM-dependent low > 60
Escherichia coli ECOR27 1.00 NOLOHH_16125 amn AMP nucleosidase 1.00 NOLOHH_04480 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 57
Escherichia coli ECRC98 1.00 JDDGAC_29310 amn AMP nucleosidase 1.00 JDDGAC_15855 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Escherichia coli ECRC101 1.00 MCAODC_20210 amn AMP nucleosidase 1.00 MCAODC_02730 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Escherichia coli ECRC99 1.00 KEDOAH_02930 amn AMP nucleosidase 1.00 KEDOAH_15940 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01726 AMP nucleosidase 1.00 OHPLBJKB_03862 '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 low > 73
Escherichia coli ECOR38 1.00 HEPCGN_03515 amn AMP nucleosidase 1.00 HEPCGN_10445 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 85
Escherichia fergusonii Becca 1.00 EFB2_01930 AMP nucleosidase 1.00 EFB2_04355 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS11455 AMP nucleosidase 1.00 ECOLIN_RS24270 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Enterobacter sp. TBS_079 0.93 MPMX20_02987 AMP nucleosidase 0.96 MPMX20_00461 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB low > 85
Enterobacter asburiae PDN3 0.93 EX28DRAFT_0555 AMP nucleosidase 0.97 EX28DRAFT_3377 rRNA methylase, putative, group 3 low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF3974 AMP nucleosidase (EC 3.2.2.4) 0.97 GFF833 '23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)' transl_table=11 low > 78
Klebsiella michiganensis M5al 0.87 BWI76_RS18545 AMP nucleosidase 0.96 BWI76_RS02580 23S rRNA (guanosine(2251)-2'-O)-methyltransferase low > 92
Serratia liquefaciens MT49 0.82 IAI46_16720 AMP nucleosidase 0.87 IAI46_01665 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 86
Pectobacterium carotovorum WPP14 0.81 HER17_RS14005 AMP nucleosidase 0.84 HER17_RS03840 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 75
Dickeya dadantii 3937 0.79 DDA3937_RS06940 AMP nucleosidase 0.87 DDA3937_RS17255 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 74
Rahnella sp. WP5 0.78 EX31_RS17755 AMP nucleosidase 0.85 EX31_RS08780 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 89
Dickeya dianthicola 67-19 0.78 HGI48_RS06920 AMP nucleosidase 0.87 HGI48_RS17310 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Dickeya dianthicola ME23 0.78 DZA65_RS07265 AMP nucleosidase 0.86 DZA65_RS18400 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 75
Erwinia tracheiphila SCR3 0.77 LU632_RS14885 AMP nucleosidase 0.85 LU632_RS21745 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 74
Pantoea sp. MT58 0.76 IAI47_07865 AMP nucleosidase 0.87 IAI47_02630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 76
Caulobacter crescentus NA1000 Δfur 0.64 CCNA_00265 AMP nucleosidase 0.26 CCNA_01297 23S rRNA Gm2251 methyltransferase — —
Caulobacter crescentus NA1000 0.64 CCNA_00265 AMP nucleosidase 0.26 CCNA_01297 23S rRNA Gm2251 methyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.61 Ga0059261_4012 AMP nucleosidase 0.25 Ga0059261_1814 rRNA methylase, putative, group 3 0.34 57
Pseudomonas putida KT2440 0.53 PP_4779 AMP nucleosidase 0.56 PP_4879 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB low > 96
Pseudomonas simiae WCS417 0.52 PS417_24585 AMP nucleosidase 0.56 PS417_02560 23S rRNA methyltransferase low > 88
Bosea sp. OAE506 0.52 ABIE41_RS04230 AMP nucleosidase 0.22 ABIE41_RS14185 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 77
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_2721 AMP nucleosidase (EC 3.2.2.4) 0.57 Pf1N1B4_1402 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) low > 87
Pseudomonas fluorescens SBW25 0.51 PFLU_RS26515 AMP nucleosidase 0.56 PFLU_RS02630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 109
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS26515 AMP nucleosidase 0.56 PFLU_RS02630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 109
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_1388 AMP nucleosidase (EC 3.2.2.4) 0.57 PfGW456L13_143 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) low > 87
Pseudomonas stutzeri RCH2 0.51 Psest_0542 AMP nucleosidase 0.57 Psest_0692 rRNA methylase, putative, group 3 low > 67
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_15450 AMP nucleosidase 0.57 AO356_08605 23S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_5027 AMP nucleosidase (EC 3.2.2.4) 0.57 Pf6N2E2_3606 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_06335 AMP nucleosidase 0.57 AO353_13205 23S rRNA methyltransferase low > 101
Pseudomonas sp. RS175 0.51 PFR28_03840 AMP nucleosidase 0.57 PFR28_05131 '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.51 Psyr_4337 AMP nucleosidase 0.57 Psyr_0580 23S rRNA Gm-2251 2'-O-methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.51 Psyr_4337 AMP nucleosidase 0.57 Psyr_0580 23S rRNA Gm-2251 2'-O-methyltransferase low > 86
Pseudomonas sp. S08-1 0.50 OH686_08855 AMP nucleosidase 0.60 OH686_15915 23S rRNA (guanosine(2251)-2'-O)-methyltransferase low > 80
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS22470 AMP nucleosidase 0.53 RALBFv3_RS15350 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Ralstonia solanacearum UW163 0.45 UW163_RS23015 AMP nucleosidase 0.53 UW163_RS12815 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS17145 AMP nucleosidase 0.52 ABZR87_RS10990 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 80
Ralstonia solanacearum GMI1000 0.45 RS_RS18175 AMP nucleosidase 0.52 RS_RS06160 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 80
Ralstonia solanacearum PSI07 0.45 RPSI07_RS00695 AMP nucleosidase 0.52 RPSI07_RS18025 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.49 42
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS21185 AMP nucleosidase 0.49 RR42_RS13060 23S rRNA methyltransferase low > 128
Acidovorax sp. GW101-3H11 0.43 Ac3H11_4669 AMP nucleosidase (EC 3.2.2.4) 0.49 Ac3H11_4141 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF370 AMP nucleosidase (EC 3.2.2.4) 0.48 GFF4838 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) low > 90
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS19630 AMP nucleosidase 0.50 HSERO_RS09295 23S rRNA (guanosine-2'-O-)-methyltransferase low > 78
Phaeobacter inhibens DSM 17395 0.41 PGA1_c34250 AMP nucleosidase Amn 0.24 PGA1_c09200 putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB low > 62
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_06027 AMP nucleosidase 0.51 H281DRAFT_00713 23S rRNA Gm-2251 2'-O-methyltransferase low > 103
Azospirillum brasilense Sp245 0.41 AZOBR_RS14175 AMP nucleosidase 0.33 AZOBR_RS11565 ribosomal large subunit pseudouridine synthase low > 97
Paraburkholderia graminis OAS925 0.41 ABIE53_004847 AMP nucleosidase 0.51 ABIE53_001941 23S rRNA (guanosine2251-2'-O)-methyltransferase low > 113
Dinoroseobacter shibae DFL-12 0.41 Dshi_3289 AMP nucleosidase (RefSeq) 0.23 Dshi_2571 RNA methyltransferase, TrmH family, group 3 (RefSeq) — —
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS33635 AMP nucleosidase 0.52 BPHYT_RS08460 23S rRNA (guanosine-2'-O-)-methyltransferase — —
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS17860 AMP nucleosidase 0.52 QEN71_RS22920 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 153
Variovorax sp. OAS795 0.41 ABID97_RS00880 AMP nucleosidase 0.49 ABID97_RS14320 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB 0.45 81
Variovorax sp. SCN45 0.40 GFF3583 AMP nucleosidase (EC 3.2.2.4) 0.49 GFF1018 23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185) low > 127
Azospirillum sp. SherDot2 0.40 MPMX19_00597 AMP nucleosidase 0.31 MPMX19_00374 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB — —
Castellaniella sp019104865 MT123 0.40 ABCV34_RS12200 AMP nucleosidase 0.52 ABCV34_RS06630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 48

Not shown: 4 genomes with orthologs for b1982 only; 29 genomes with orthologs for b4180 only