Conservation of cofitness between b2565 and b4058 in Escherichia coli BW25113

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2565 recO DNA repair protein RecO (NCBI) 1.0 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.75 5
Escherichia coli ECRC98 1.00 JDDGAC_25085 recO DNA repair protein RecO 1.00 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECRC101 1.00 MCAODC_11950 recO DNA repair protein RecO 1.00 MCAODC_03405 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14520 DNA repair protein RecO 1.00 ECOLIN_RS23485 excinuclease ABC subunit UvrA — —
Escherichia coli ECRC101 1.00 OKFHMN_21420 recO DNA repair protein RecO 1.00 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECRC102 1.00 NIAGMN_19190 recO DNA repair protein RecO 1.00 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECRC99 1.00 KEDOAH_06800 recO DNA repair protein RecO 1.00 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli BL21 1.00 ECD_02459 gap repair protein 1.00 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.62 10
Escherichia fergusonii Becca 1.00 EFB2_01331 DNA repair protein RecO 1.00 EFB2_04533 UvrABC system protein A low > 86
Escherichia coli ECRC62 1.00 BNILDI_11895 recO DNA repair protein RecO 1.00 BNILDI_06380 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECOR38 1.00 HEPCGN_20565 recO DNA repair protein RecO 1.00 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA low > 85
Escherichia coli ECOR27 1.00 NOLOHH_13095 recO DNA repair protein RecO 1.00 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01142 DNA repair protein RecO 1.00 OHPLBJKB_03983 UvrABC system protein A low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF2473 DNA recombination and repair protein RecO 0.97 GFF1429 Excinuclease ABC subunit A low > 78
Klebsiella michiganensis M5al 0.90 BWI76_RS21310 DNA repair protein RecO 0.96 BWI76_RS01950 excinuclease ABC subunit A low > 92
Enterobacter asburiae PDN3 0.90 EX28DRAFT_0081 DNA replication and repair protein RecO 0.96 EX28DRAFT_4246 excinuclease ABC, A subunit low > 76
Enterobacter sp. TBS_079 0.81 MPMX20_03436 DNA repair protein RecO 0.96 MPMX20_00276 UvrABC system protein A 0.37 3
Dickeya dadantii 3937 0.81 DDA3937_RS15725 DNA repair protein RecO 0.91 DDA3937_RS17605 excinuclease ABC subunit UvrA low > 74
Pantoea sp. MT58 0.80 IAI47_04890 DNA repair protein RecO 0.91 IAI47_17815 excinuclease ABC subunit UvrA low > 76
Dickeya dianthicola ME23 0.80 DZA65_RS16890 DNA repair protein RecO 0.91 DZA65_RS18735 excinuclease ABC subunit UvrA low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS15810 DNA repair protein RecO 0.91 HGI48_RS17610 excinuclease ABC subunit UvrA low > 71
Erwinia tracheiphila SCR3 0.78 LU632_RS15375 recO DNA repair protein RecO 0.91 LU632_RS23685 uvrA excinuclease ABC subunit UvrA low > 74
Pectobacterium carotovorum WPP14 0.78 HER17_RS05825 DNA repair protein RecO 0.91 HER17_RS03550 excinuclease ABC subunit UvrA low > 75
Rahnella sp. WP5 0.78 EX31_RS21845 DNA repair protein RecO 0.91 EX31_RS11990 excinuclease ABC subunit UvrA low > 89
Serratia liquefaciens MT49 0.76 IAI46_19540 DNA repair protein RecO 0.92 IAI46_22905 excinuclease ABC subunit UvrA 0.43 65
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_12445 DNA repair protein RecO 0.82 CSW01_02080 UvrABC system protein A low > 62
Marinobacter adhaerens HP15 0.31 HP15_786 DNA repair protein RecO 0.73 HP15_406 excinuclease ABC, ATPase subunit (A) 0.61 4
Pseudomonas sp. S08-1 0.29 OH686_20090 DNA repair protein RecO 0.77 OH686_15495 excinuclease ABC subunit A low > 80
Shewanella loihica PV-4 0.29 Shew_1056 DNA repair protein RecO (RefSeq) 0.82 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.84 1
Shewanella oneidensis MR-1 0.29 SO1350 recO DNA repair protein RecO (NCBI ptt file) 0.82 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.49 6
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_5428 DNA recombination and repair protein RecO 0.78 Pf6N2E2_4888 Excinuclease ABC subunit A 0.65 4
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_17505 DNA repair protein RecO 0.78 AO356_14785 ABC-ATPase UvrA 0.68 3
Shewanella sp. ANA-3 0.28 Shewana3_3024 DNA repair protein RecO (RefSeq) 0.82 Shewana3_3592 excinuclease ABC subunit A (RefSeq) low > 73
Pseudomonas stutzeri RCH2 0.28 Psest_3090 DNA repair protein RecO 0.76 Psest_3576 excinuclease ABC, A subunit 0.85 3
Alteromonas macleodii MIT1002 0.28 MIT1002_00790 Recombination protein O 0.80 MIT1002_00179 Excinuclease ABC subunit A low > 70
Ralstonia solanacearum GMI1000 0.28 RS_RS05275 DNA repair protein RecO 0.68 RS_RS02080 excinuclease ABC subunit UvrA low > 80
Ralstonia solanacearum PSI07 0.28 RPSI07_RS18965 DNA repair protein RecO 0.67 RPSI07_RS22065 excinuclease ABC subunit UvrA low > 81
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_04500 DNA repair protein RecO 0.78 AO353_06855 ABC-ATPase UvrA 0.30 11
Pseudomonas putida KT2440 0.28 PP_1435 DNA repair protein RecO 0.77 PP_0483 excinuclease (uvrABC system protein A) — —
Pseudomonas sp. RS175 0.28 PFR28_03521 DNA repair protein RecO 0.78 PFR28_03974 UvrABC system protein A low > 88
Ralstonia solanacearum UW163 0.28 UW163_RS11960 DNA repair protein RecO 0.67 UW163_RS02345 excinuclease ABC subunit UvrA — —
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_890 DNA recombination and repair protein RecO 0.78 Pf1N1B4_2611 Excinuclease ABC subunit A 0.52 2
Shewanella amazonensis SB2B 0.28 Sama_0882 DNA repair protein RecO (RefSeq) 0.82 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.61 8
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS14495 DNA repair protein RecO 0.67 RALBFv3_RS11235 excinuclease ABC subunit UvrA low > 76
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS07140 DNA repair protein RecO 0.73 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.89 4
Pseudomonas fluorescens SBW25 0.27 PFLU_RS05270 DNA repair protein RecO 0.78 PFLU_RS27025 excinuclease ABC subunit UvrA low > 109
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS05270 DNA repair protein RecO 0.78 PFLU_RS27025 excinuclease ABC subunit UvrA low > 109
Pseudomonas simiae WCS417 0.27 PS417_05200 DNA recombination protein RecO 0.78 PS417_25395 excinuclease ABC subunit A 0.27 32
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS10215 DNA repair protein RecO 0.68 ABZR87_RS07120 excinuclease ABC subunit UvrA low > 80
Rhodanobacter denitrificans MT42 0.27 LRK55_RS16695 DNA repair protein RecO 0.72 LRK55_RS14925 excinuclease ABC subunit UvrA low > 63
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS16980 DNA repair protein RecO 0.72 LRK54_RS15210 excinuclease ABC subunit UvrA low > 59
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_4838 DNA recombination and repair protein RecO 0.78 PfGW456L13_1283 Excinuclease ABC subunit A 0.33 17
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_07860 recO DNA repair protein RecO 0.72 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA low > 52
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_3949 DNA replication and repair protein RecO 0.78 Psyr_4520 Excinuclease ABC subunit A 0.75 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_3949 DNA replication and repair protein RecO 0.78 Psyr_4520 Excinuclease ABC subunit A 0.85 2
Dechlorosoma suillum PS 0.25 Dsui_2462 DNA repair protein RecO 0.72 Dsui_1622 excinuclease ABC, A subunit 0.95 2
Kangiella aquimarina DSM 16071 0.25 B158DRAFT_2189 DNA replication and repair protein RecO 0.77 B158DRAFT_0885 excinuclease ABC, A subunit 0.78 6
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.3671.1 DNA recombination and repair protein RecO 0.73 Xcc-8004.3830.1 Excinuclease ABC subunit A low > 74
Acinetobacter radioresistens SK82 0.18 MPMX26_02153 DNA repair protein RecO 0.68 MPMX26_02892 UvrABC system protein A low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF3348 DNA recombination and repair protein RecO 0.66 GFF2755 Excinuclease ABC subunit A low > 90
Variovorax sp. SCN45 0.16 GFF3872 DNA recombination and repair protein RecO 0.65 GFF4944 Excinuclease ABC subunit A low > 127
Variovorax sp. OAS795 0.16 ABID97_RS08375 DNA repair protein RecO 0.65 ABID97_RS04340 excinuclease ABC subunit UvrA low > 91
Acidovorax sp. GW101-3H11 0.14 Ac3H11_1564 DNA recombination and repair protein RecO 0.64 Ac3H11_4387 Excinuclease ABC subunit A low > 79

Not shown: 1 genomes with orthologs for b2565 only; 40 genomes with orthologs for b4058 only