Conservation of cofitness between b3172 and b3281 in Escherichia coli BW25113

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3172 argG argininosuccinate synthase (NCBI) 1.0 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.92 16
Escherichia coli Nissle 1917 1.00 ECOLIN_RS18275 argininosuccinate synthase 0.97 ECOLIN_RS18840 shikimate dehydrogenase low > 52
Escherichia fergusonii Becca 1.00 EFB2_00651 Argininosuccinate synthase 0.96 EFB2_00542 Shikimate dehydrogenase (NADP(+)) low > 86
Escherichia coli ECOR38 1.00 HEPCGN_16965 argG argininosuccinate synthase 0.97 HEPCGN_16385 aroE shikimate dehydrogenase low > 85
Escherichia coli ECRC99 1.00 KEDOAH_10060 argG argininosuccinate synthase 0.98 KEDOAH_10585 aroE shikimate dehydrogenase — —
Escherichia coli ECRC98 1.00 JDDGAC_21715 argG argininosuccinate synthase 0.98 JDDGAC_21185 aroE shikimate dehydrogenase — —
Escherichia coli ECRC101 1.00 OKFHMN_18090 argG argininosuccinate synthase 0.98 OKFHMN_17565 aroE shikimate dehydrogenase — —
Escherichia coli ECRC101 1.00 MCAODC_08610 argG argininosuccinate synthase 0.98 MCAODC_08085 aroE shikimate dehydrogenase — —
Escherichia coli ECRC102 1.00 NIAGMN_15850 argG argininosuccinate synthase 0.98 NIAGMN_15325 aroE shikimate dehydrogenase — —
Escherichia coli ECOR27 1.00 NOLOHH_09890 argG argininosuccinate synthase 0.99 NOLOHH_09355 aroE shikimate dehydrogenase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00528 Argininosuccinate synthase 1.00 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) low > 73
Escherichia coli BL21 1.00 ECD_03038 argininosuccinate synthetase 1.00 ECD_03132 dehydroshikimate reductase, NAD(P)-binding low > 60
Escherichia coli ECRC62 1.00 BNILDI_01645 argG argininosuccinate synthase 0.99 BNILDI_02165 aroE shikimate dehydrogenase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF2913 Argininosuccinate synthase (EC 6.3.4.5) 0.87 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 78
Klebsiella michiganensis M5al 0.95 BWI76_RS25115 argininosuccinate synthase 0.81 BWI76_RS25645 shikimate dehydrogenase 0.79 55
Enterobacter sp. TBS_079 0.95 MPMX20_04077 Argininosuccinate synthase 0.82 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.91 17
Enterobacter asburiae PDN3 0.95 EX28DRAFT_3224 argininosuccinate synthase (EC 6.3.4.5) 0.81 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Pectobacterium carotovorum WPP14 0.93 HER17_RS21055 argininosuccinate synthase 0.62 HER17_RS02250 shikimate dehydrogenase 0.75 40
Dickeya dianthicola 67-19 0.92 HGI48_RS00355 argininosuccinate synthase 0.61 HGI48_RS19190 shikimate dehydrogenase — —
Dickeya dianthicola ME23 0.92 DZA65_RS00355 argininosuccinate synthase 0.60 DZA65_RS20315 shikimate dehydrogenase — —
Dickeya dadantii 3937 0.92 DDA3937_RS20890 argininosuccinate synthase 0.61 DDA3937_RS19100 shikimate dehydrogenase — —
Rahnella sp. WP5 0.90 EX31_RS13445 argininosuccinate synthase 0.62 EX31_RS15950 shikimate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.80 QEN71_RS09235 argininosuccinate synthase 0.43 QEN71_RS27130 shikimate dehydrogenase 0.68 83
Rhodopseudomonas palustris CGA009 0.79 TX73_002040 argininosuccinate synthase 0.22 TX73_022410 shikimate dehydrogenase — —
Castellaniella sp019104865 MT123 0.79 ABCV34_RS05390 argininosuccinate synthase 0.39 ABCV34_RS11620 shikimate dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.79 HSERO_RS07180 argininosuccinate synthase 0.44 HSERO_RS01990 shikimate 5-dehydrogenase — —
Acinetobacter radioresistens SK82 0.78 MPMX26_02260 Argininosuccinate synthase 0.40 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) low > 36
Ralstonia sp. UNC404CL21Col 0.78 ABZR87_RS00835 argininosuccinate synthase 0.39 ABZR87_RS01605 shikimate dehydrogenase 0.60 54
Acidovorax sp. GW101-3H11 0.78 Ac3H11_2616 Argininosuccinate synthase (EC 6.3.4.5) 0.32 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Ralstonia solanacearum IBSBF1503 0.77 RALBFv3_RS05180 argininosuccinate synthase 0.37 RALBFv3_RS05945 shikimate dehydrogenase — —
Ralstonia solanacearum UW163 0.77 UW163_RS08445 argininosuccinate synthase 0.37 UW163_RS07680 shikimate dehydrogenase — —
Ralstonia solanacearum GMI1000 0.77 RS_RS12800 argininosuccinate synthase 0.37 RS_RS13890 shikimate dehydrogenase — —
Ralstonia solanacearum PSI07 0.77 RPSI07_RS12120 argininosuccinate synthase 0.37 RPSI07_RS11300 shikimate dehydrogenase — —
Variovorax sp. SCN45 0.77 GFF3096 Argininosuccinate synthase (EC 6.3.4.5) 0.32 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.76 GFF294 Argininosuccinate synthase (EC 6.3.4.5) 0.41 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Variovorax sp. OAS795 0.76 ABID97_RS21670 argininosuccinate synthase 0.29 ABID97_RS06300 shikimate dehydrogenase — —
Erwinia tracheiphila SCR3 0.16 LU632_RS19605 argininosuccinate synthase 0.64 LU632_RS22445 aroE shikimate dehydrogenase low > 74
Serratia liquefaciens MT49 0.15 IAI46_24505 argininosuccinate synthase 0.66 IAI46_23240 shikimate dehydrogenase 0.70 47
Rhodospirillum rubrum S1H 0.15 Rru_A3751 Argininosuccinate synthase (NCBI) 0.22 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) — —
Shewanella loihica PV-4 0.15 Shew_0205 argininosuccinate synthase (RefSeq) 0.47 Shew_3727 shikimate 5-dehydrogenase (RefSeq) low > 60
Sphingomonas koreensis DSMZ 15582 0.14 Ga0059261_1393 argininosuccinate synthase (EC 6.3.4.5) 0.17 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.92 48
Phaeobacter inhibens DSM 17395 0.14 PGA1_c34920 argininosuccinate synthase ArgG 0.23 PGA1_c35150 shikimate dehydrogenase AroE — —
Sinorhizobium meliloti 1021 0.14 SMc03826 argininosuccinate synthase 0.23 SMc02791 shikimate 5-dehydrogenase — —
Agrobacterium fabrum C58 0.14 Atu2667 argininosuccinate synthase 0.24 Atu0003 shikimate 5-dehydrogenase — —
Shewanella oneidensis MR-1 0.14 SO0278 argG argininosuccinate synthase (NCBI ptt file) 0.48 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.85 71
Caulobacter crescentus NA1000 Δfur 0.13 CCNA_00128 argininosuccinate synthase 0.19 CCNA_00003 shikimate 5-dehydrogenase low > 67
Shewanella sp. ANA-3 0.13 Shewana3_3902 argininosuccinate synthase (RefSeq) 0.48 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.87 43
Dinoroseobacter shibae DFL-12 0.13 Dshi_3472 Argininosuccinate synthase (RefSeq) 0.25 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) — —
Caulobacter crescentus NA1000 0.13 CCNA_00128 argininosuccinate synthase 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Azospirillum sp. SherDot2 0.13 MPMX19_02369 Argininosuccinate synthase 0.21 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) — —
Paraburkholderia bryophila 376MFSha3.1 0.13 H281DRAFT_04120 argininosuccinate synthase 0.40 H281DRAFT_01679 shikimate dehydrogenase (EC 1.1.1.25) low > 103
Dechlorosoma suillum PS 0.13 Dsui_3248 argininosuccinate synthase 0.48 Dsui_0443 shikimate 5-dehydrogenase — —
Burkholderia phytofirmans PsJN 0.13 BPHYT_RS15920 argininosuccinate synthase 0.40 BPHYT_RS16975 shikimate 5-dehydrogenase 0.73 60
Brevundimonas sp. GW460-12-10-14-LB2 0.12 A4249_RS14275 argininosuccinate synthase 0.18 A4249_RS13660 shikimate dehydrogenase — —
Bosea sp. OAE506 0.12 ABIE41_RS00340 argininosuccinate synthase 0.19 ABIE41_RS04650 shikimate dehydrogenase — —
Paraburkholderia graminis OAS925 0.12 ABIE53_003355 argininosuccinate synthase 0.41 ABIE53_003560 shikimate dehydrogenase — —
Pseudomonas sp. S08-1 0.12 OH686_03930 argininosuccinate synthase 0.48 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.77 19
Pseudomonas putida KT2440 0.12 PP_1088 Argininosuccinate synthase 0.45 PP_0074 shikimate 5-dehydrogenase — —
Pseudomonas stutzeri RCH2 0.12 Psest_3121 argininosuccinate synthase 0.47 Psest_0029 shikimate 5-dehydrogenase — —
Pseudomonas sp. RS175 0.12 PFR28_03353 Argininosuccinate synthase 0.50 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas fluorescens SBW25-INTG 0.11 PFLU_RS05725 argininosuccinate synthase 0.47 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.11 PFLU_RS05725 argininosuccinate synthase 0.47 PFLU_RS00120 shikimate dehydrogenase — —
Marinobacter adhaerens HP15 0.11 HP15_2367 argininosuccinate synthase 0.41 HP15_3750 shikimate dehydrogenase — —
Rhodanobacter sp. FW510-T8 0.09 OKGIIK_09465 argG argininosuccinate synthase 0.32 OKGIIK_15365 aroE shikimate dehydrogenase low > 52

Not shown: 10 genomes with orthologs for b3172 only; 27 genomes with orthologs for b3281 only