Conservation of cofitness between b2913 and b3281 in Escherichia coli BW25113

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 1.0 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.90 12
Escherichia coli Nissle 1917 1.00 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.97 ECOLIN_RS18840 shikimate dehydrogenase low > 52
Escherichia coli ECRC101 1.00 OKFHMN_19460 serA phosphoglycerate dehydrogenase 0.98 OKFHMN_17565 aroE shikimate dehydrogenase — —
Escherichia coli ECRC102 1.00 NIAGMN_17225 serA phosphoglycerate dehydrogenase 0.98 NIAGMN_15325 aroE shikimate dehydrogenase — —
Escherichia coli ECRC101 1.00 MCAODC_09980 serA phosphoglycerate dehydrogenase 0.98 MCAODC_08085 aroE shikimate dehydrogenase — —
Escherichia coli ECRC98 1.00 JDDGAC_23100 serA phosphoglycerate dehydrogenase 0.98 JDDGAC_21185 aroE shikimate dehydrogenase — —
Escherichia coli BL21 1.00 ECD_02744 D-3-phosphoglycerate dehydrogenase 1.00 ECD_03132 dehydroshikimate reductase, NAD(P)-binding low > 60
Escherichia coli ECOR38 1.00 HEPCGN_18760 serA phosphoglycerate dehydrogenase 0.97 HEPCGN_16385 aroE shikimate dehydrogenase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase 1.00 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) low > 73
Escherichia coli ECOR27 1.00 NOLOHH_11370 serA phosphoglycerate dehydrogenase 0.99 NOLOHH_09355 aroE shikimate dehydrogenase low > 57
Escherichia coli ECRC99 1.00 KEDOAH_08680 serA phosphoglycerate dehydrogenase 0.98 KEDOAH_10585 aroE shikimate dehydrogenase — —
Escherichia coli ECRC62 1.00 BNILDI_09905 serA phosphoglycerate dehydrogenase 0.99 BNILDI_02165 aroE shikimate dehydrogenase — —
Escherichia fergusonii Becca 1.00 EFB2_00990 D-3-phosphoglycerate dehydrogenase 0.96 EFB2_00542 Shikimate dehydrogenase (NADP(+)) low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.87 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 78
Klebsiella michiganensis M5al 0.93 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.81 BWI76_RS25645 shikimate dehydrogenase 0.71 61
Enterobacter sp. TBS_079 0.93 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.82 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.85 34
Enterobacter asburiae PDN3 0.92 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases 0.81 EX28DRAFT_0046 shikimate dehydrogenase — —
Pantoea sp. MT58 0.87 IAI47_03725 phosphoglycerate dehydrogenase 0.66 IAI47_02315 shikimate dehydrogenase — —
Erwinia tracheiphila SCR3 0.86 LU632_RS05855 serA phosphoglycerate dehydrogenase 0.64 LU632_RS22445 aroE shikimate dehydrogenase low > 74
Pectobacterium carotovorum WPP14 0.85 HER17_RS02725 phosphoglycerate dehydrogenase 0.62 HER17_RS02250 shikimate dehydrogenase 0.93 9
Serratia liquefaciens MT49 0.85 IAI46_20900 phosphoglycerate dehydrogenase 0.66 IAI46_23240 shikimate dehydrogenase 0.62 66
Dickeya dadantii 3937 0.83 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.61 DDA3937_RS19100 shikimate dehydrogenase — —
Rahnella sp. WP5 0.82 EX31_RS21470 phosphoglycerate dehydrogenase 0.62 EX31_RS15950 shikimate dehydrogenase — —
Dickeya dianthicola 67-19 0.82 HGI48_RS18400 phosphoglycerate dehydrogenase 0.61 HGI48_RS19190 shikimate dehydrogenase — —
Dickeya dianthicola ME23 0.82 DZA65_RS19540 phosphoglycerate dehydrogenase 0.60 DZA65_RS20315 shikimate dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_12555 phosphoglycerate dehydrogenase 0.49 CSW01_00280 shikimate dehydrogenase low > 62
Alteromonas macleodii MIT1002 0.71 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.31 MIT1002_00029 Shikimate dehydrogenase — —
Shewanella loihica PV-4 0.70 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.47 Shew_3727 shikimate 5-dehydrogenase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.70 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.48 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.79 69
Shewanella sp. ANA-3 0.70 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.48 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.85 43
Shewanella amazonensis SB2B 0.69 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.43 Sama_0052 shikimate dehydrogenase (RefSeq) low > 62
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.49 Psyr_0025 shikimate dehydrogenase 0.73 41
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.49 Psyr_0025 shikimate dehydrogenase low > 86
Pseudomonas sp. S08-1 0.67 OH686_11280 D-3-phosphoglycerate dehydrogenase 0.48 OH686_12485 Shikimate 5-dehydrogenase I alpha low > 80
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.48 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.76 46
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.50 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.47 64
Pseudomonas sp. RS175 0.66 PFR28_04842 D-3-phosphoglycerate dehydrogenase 0.50 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_08510 3-phosphoglycerate dehydrogenase 0.49 AO353_10670 shikimate dehydrogenase 0.74 35
Pseudomonas stutzeri RCH2 0.66 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases 0.47 Psest_0029 shikimate 5-dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.49 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas putida KT2440 0.66 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase 0.45 PP_0074 shikimate 5-dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_10300 3-phosphoglycerate dehydrogenase 0.49 AO356_11315 shikimate dehydrogenase low > 104
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.32 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 79
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS28695 phosphoglycerate dehydrogenase 0.47 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas simiae WCS417 0.65 PS417_27040 3-phosphoglycerate dehydrogenase 0.48 PS417_00125 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.65 PFLU_RS28695 phosphoglycerate dehydrogenase 0.47 PFLU_RS00120 shikimate dehydrogenase — —
Marinobacter adhaerens HP15 0.65 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein 0.41 HP15_3750 shikimate dehydrogenase — —
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.33 ABZR86_RS14985 shikimate dehydrogenase 0.95 5
Variovorax sp. SCN45 0.63 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.32 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 127
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases 0.30 B158DRAFT_0259 shikimate 5-dehydrogenase low > 40
Acinetobacter radioresistens SK82 0.63 MPMX26_02773 D-3-phosphoglycerate dehydrogenase 0.40 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) low > 36
Variovorax sp. OAS795 0.63 ABID97_RS07235 phosphoglycerate dehydrogenase 0.29 ABID97_RS06300 shikimate dehydrogenase — —
Rhodanobacter denitrificans MT42 0.62 LRK55_RS02935 phosphoglycerate dehydrogenase 0.33 LRK55_RS08360 shikimate dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS03185 phosphoglycerate dehydrogenase 0.33 LRK54_RS08595 shikimate dehydrogenase low > 59
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.33 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.83 8
Rhodanobacter sp. FW510-T8 0.61 OKGIIK_10055 serA phosphoglycerate dehydrogenase 0.32 OKGIIK_15365 aroE shikimate dehydrogenase 0.66 22
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.41 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 90
Lysobacter sp. OAE881 0.60 ABIE51_RS13245 phosphoglycerate dehydrogenase 0.31 ABIE51_RS01815 shikimate dehydrogenase low > 62
Rhodospirillum rubrum S1H 0.58 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) 0.22 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) — —
Azospirillum sp. SherDot2 0.55 MPMX19_00753 D-3-phosphoglycerate dehydrogenase 0.21 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) — —
Bosea sp. OAE506 0.55 ABIE41_RS08410 phosphoglycerate dehydrogenase 0.19 ABIE41_RS04650 shikimate dehydrogenase — —
Castellaniella sp019104865 MT123 0.53 ABCV34_RS15150 phosphoglycerate dehydrogenase 0.39 ABCV34_RS11620 shikimate dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS27010 D-3-phosphoglycerate dehydrogenase 0.37 RR42_RS17645 shikimate dehydrogenase low > 128

Not shown: 3 genomes with orthologs for b2913 only; 28 genomes with orthologs for b3281 only