Conservation of cofitness between b2565 and b2892 in Escherichia coli BW25113

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2565 recO DNA repair protein RecO (NCBI) 1.0 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) 0.52 11
Escherichia coli ECRC102 1.00 NIAGMN_19190 recO DNA repair protein RecO 0.99 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14520 DNA repair protein RecO 0.99 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC98 1.00 JDDGAC_25085 recO DNA repair protein RecO 0.99 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC101 1.00 OKFHMN_21420 recO DNA repair protein RecO 0.99 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli BL21 1.00 ECD_02459 gap repair protein 0.99 ECD_02724 ssDNA exonuclease, 5 0.66 7
Escherichia coli ECRC101 1.00 MCAODC_11950 recO DNA repair protein RecO 0.99 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC99 1.00 KEDOAH_06800 recO DNA repair protein RecO 0.99 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECOR27 1.00 NOLOHH_13095 recO DNA repair protein RecO 0.99 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ low > 57
Escherichia coli ECOR38 1.00 HEPCGN_20565 recO DNA repair protein RecO 0.99 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ low > 85
Escherichia coli ECRC62 1.00 BNILDI_11895 recO DNA repair protein RecO 0.99 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01142 DNA repair protein RecO 0.99 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ low > 73
Escherichia fergusonii Becca 1.00 EFB2_01331 DNA repair protein RecO 0.99 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF2473 DNA recombination and repair protein RecO 0.93 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 78
Klebsiella michiganensis M5al 0.90 BWI76_RS21310 DNA repair protein RecO 0.89 BWI76_RS23805 ssDNA exonuclease RecJ low > 92
Enterobacter asburiae PDN3 0.90 EX28DRAFT_0081 DNA replication and repair protein RecO 0.90 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ low > 76
Enterobacter sp. TBS_079 0.81 MPMX20_03436 DNA repair protein RecO 0.89 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ 0.35 5
Dickeya dadantii 3937 0.81 DDA3937_RS15725 DNA repair protein RecO 0.76 DDA3937_RS03310 single-stranded-DNA-specific exonuclease RecJ low > 74
Dickeya dianthicola 67-19 0.80 HGI48_RS15810 DNA repair protein RecO 0.77 HGI48_RS03450 single-stranded-DNA-specific exonuclease RecJ low > 71
Pantoea sp. MT58 0.80 IAI47_04890 DNA repair protein RecO 0.77 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ low > 76
Dickeya dianthicola ME23 0.80 DZA65_RS16890 DNA repair protein RecO 0.77 DZA65_RS03495 single-stranded-DNA-specific exonuclease RecJ low > 75
Erwinia tracheiphila SCR3 0.78 LU632_RS15375 recO DNA repair protein RecO 0.72 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ low > 74
Pectobacterium carotovorum WPP14 0.78 HER17_RS05825 DNA repair protein RecO 0.72 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ 0.61 8
Rahnella sp. WP5 0.78 EX31_RS21845 DNA repair protein RecO 0.76 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ low > 89
Serratia liquefaciens MT49 0.76 IAI46_19540 DNA repair protein RecO 0.79 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ 0.71 10
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_12445 DNA repair protein RecO 0.64 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ 0.55 48
Marinobacter adhaerens HP15 0.31 HP15_786 DNA repair protein RecO 0.50 HP15_766 bacterial RecJ exonuclease 0.42 27
Pseudomonas sp. S08-1 0.29 OH686_20090 DNA repair protein RecO 0.56 OH686_06955 single-stranded-DNA-specific exonuclease RecJ low > 80
Shewanella loihica PV-4 0.29 Shew_1056 DNA repair protein RecO (RefSeq) 0.57 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.73 9
Shewanella oneidensis MR-1 0.29 SO1350 recO DNA repair protein RecO (NCBI ptt file) 0.57 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) 0.60 1
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_17505 DNA repair protein RecO 0.56 AO356_06345 single-stranded-DNA-specific exonuclease RecJ 0.38 24
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_5428 DNA recombination and repair protein RecO 0.56 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.54 9
Shewanella sp. ANA-3 0.28 Shewana3_3024 DNA repair protein RecO (RefSeq) 0.58 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.73 4
Pseudomonas stutzeri RCH2 0.28 Psest_3090 DNA repair protein RecO 0.53 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.48 12
Ralstonia solanacearum GMI1000 0.28 RS_RS05275 DNA repair protein RecO 0.41 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ low > 80
Alteromonas macleodii MIT1002 0.28 MIT1002_00790 Recombination protein O 0.53 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ low > 70
Ralstonia solanacearum PSI07 0.28 RPSI07_RS18965 DNA repair protein RecO 0.41 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ low > 81
Pseudomonas putida KT2440 0.28 PP_1435 DNA repair protein RecO 0.55 PP_1477 ssDNA-specific exonuclease RecJ low > 96
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_04500 DNA repair protein RecO 0.55 AO353_04320 single-stranded-DNA-specific exonuclease RecJ low > 101
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS14495 DNA repair protein RecO 0.41 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ low > 76
Ralstonia solanacearum UW163 0.28 UW163_RS11960 DNA repair protein RecO 0.41 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ — —
Pseudomonas sp. RS175 0.28 PFR28_03521 DNA repair protein RecO 0.55 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ low > 88
Shewanella amazonensis SB2B 0.28 Sama_0882 DNA repair protein RecO (RefSeq) 0.57 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.75 3
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_890 DNA recombination and repair protein RecO 0.56 Pf1N1B4_3020 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 87
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS07140 DNA repair protein RecO 0.44 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ low > 74
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS05270 DNA repair protein RecO 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.24 25
Pseudomonas simiae WCS417 0.27 PS417_05200 DNA recombination protein RecO 0.57 PS417_22855 ssDNA exonuclease RecJ low > 88
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS10215 DNA repair protein RecO 0.40 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ 0.37 31
Pseudomonas fluorescens SBW25 0.27 PFLU_RS05270 DNA repair protein RecO 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ low > 109
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS16980 DNA repair protein RecO 0.41 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ low > 59
Rhodanobacter denitrificans MT42 0.27 LRK55_RS16695 DNA repair protein RecO 0.17 LRK55_RS18310 DHHA1 domain-containing protein low > 63
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_4838 DNA recombination and repair protein RecO 0.55 PfGW456L13_1730 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 87
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_07860 recO DNA repair protein RecO 0.41 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ low > 52
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_3949 DNA replication and repair protein RecO 0.57 Psyr_1298 exonuclease RecJ low > 86
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_3949 DNA replication and repair protein RecO 0.57 Psyr_1298 exonuclease RecJ 0.24 28
Kangiella aquimarina DSM 16071 0.25 B158DRAFT_2189 DNA replication and repair protein RecO 0.49 B158DRAFT_2268 single-stranded-DNA-specific exonuclease RecJ 0.42 33
Dechlorosoma suillum PS 0.25 Dsui_2462 DNA repair protein RecO 0.44 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ — —
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.3671.1 DNA recombination and repair protein RecO 0.43 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 74
Acinetobacter radioresistens SK82 0.18 MPMX26_02153 DNA repair protein RecO 0.42 MPMX26_02917 Single-stranded-DNA-specific exonuclease RecJ low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF3348 DNA recombination and repair protein RecO 0.36 GFF739 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Variovorax sp. OAS795 0.16 ABID97_RS08375 DNA repair protein RecO 0.40 ABID97_RS22940 single-stranded-DNA-specific exonuclease RecJ low > 91
Variovorax sp. SCN45 0.16 GFF3872 DNA recombination and repair protein RecO 0.39 GFF6700 Single-stranded-DNA-specific exonuclease RecJ low > 127
Acidovorax sp. GW101-3H11 0.14 Ac3H11_1564 DNA recombination and repair protein RecO 0.41 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —

Not shown: 1 genomes with orthologs for b2565 only; 30 genomes with orthologs for b2892 only