Homologs of RR42_RS37085 from Cupriavidus basilensis FW507-4G11

ATP-dependent DNA ligase
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Cupriavidus basilensis FW507-4G11 RR42_RS37085 ATP-dependent DNA ligase insig. 100 100
o Variovorax sp. SCN45 GFF6242 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 51 100
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF111 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 51 99
o Ralstonia solanacearum PSI07 RPSI07_RS21105 DNA ligase D insig. 49 99
o Pseudomonas fluorescens SBW25 PFLU_RS14185 DNA ligase D insig. 49 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS14185 DNA ligase D insig. 49 99
o Burkholderia phytofirmans PsJN BPHYT_RS09215 ATP-dependent DNA ligase insig. 45 99
o Pseudomonas fluorescens FW300-N2C3 AO356_26950 ATP-dependent DNA ligase insig. 48 99
o Pseudomonas sp. S08-1 OH686_01425 DNA ligase D cofit 49 98
o Ralstonia sp. UNC404CL21Col ABZR87_RS08115 DNA ligase D insig. 49 99
o Pseudomonas lactucae CFBP13502 GEMAOFIL_03237 Multifunctional non-homologous end joining protein LigD insig. 49 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1216 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 48 99
o Pseudomonas stutzeri RCH2 Psest_2179 DNA ligase D insig. 47 99
o Pseudomonas simiae WCS417 PS417_13125 ATP-dependent DNA ligase insig. 48 99
o Pseudomonas sp. RS175 PFR28_02106 Multifunctional non-homologous end joining protein LigD insig. 46 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS22145 DNA ligase D insig. 44 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4314 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 47 99
o Pseudomonas sp. DMC3 GFF1659 Multifunctional non-homologous end joining protein LigD cofit 46 99
o Pseudomonas sp. SVBP6 COO64_RS24640 ligD DNA ligase D insig. 48 99
o Pseudomonas putida KT2440 PP_3260 DNA ligase D insig. 47 99
o Paraburkholderia graminis OAS925 ABIE53_002080 bifunctional non-homologous end joining protein LigD insig. 45 99
o Pseudomonas aeruginosa PA14 IKLFDK_10445 DNA ligase D insig. 47 99
o Pseudomonas sp. BP01 JOY50_RS26485 ligD DNA ligase D insig. 46 99
o Pseudomonas syringae pv. syringae B728a Psyr_3245 ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module insig. 44 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3245 ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module insig. 44 99
o Herbaspirillum seropedicae SmR1 HSERO_RS11360 DNA ligase insig. 43 98
o Rhizobium sp. OAE497 ABIE40_RS26435 DNA ligase D insig. 42 98
o Xanthobacter sp. DMC5 GFF242 Multifunctional non-homologous end joining protein LigD insig. 41 97
o Bosea sp. OAE506 ABIE41_RS04575 DNA ligase D insig. 40 98
o Sinorhizobium meliloti 1021 SMc03959 hypothetical protein insig. 39 99
o Agrobacterium fabrum C58 Atu4632 ATP-dependent DNA ligase insig. 41 91
o Sphingobium sp. HT1-2 GFF5134 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD cofit 39 94
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06196 ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module insig. 46 76
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3858 DNA ligase D insig. 39 95
  Agrobacterium fabrum C58 Atu5055 ATP-dependent DNA ligase insig. 38 100
  Paraburkholderia graminis OAS925 ABIE53_000212 bifunctional non-homologous end joining protein LigD insig. 46 73
  Bosea sp. OAE506 ABIE41_RS06605 DNA ligase D insig. 39 99
  Rhizobium sp. OAE497 ABIE40_RS28460 DNA ligase D insig. 37 99
  Rhizobium sp. OAE497 ABIE40_RS29525 DNA ligase D insig. 38 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS02935 DNA ligase D insig. 37 98
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10580 DNA ligase D insig. 39 99
  Pseudomonas sp. RS175 PFR28_01701 Multifunctional non-homologous end joining protein LigD insig. 44 73
  Sinorhizobium meliloti 1021 SM_b20685 hypothetical protein insig. 39 97
o Lysobacter sp. OAE881 ABIE51_RS12760 DNA ligase D insig. 36 98
o Rhodopseudomonas palustris CGA009 TX73_018915 DNA ligase D insig. 36 99
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_797 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 44 73
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2247.1 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 36 98
  Pseudomonas fluorescens FW300-N2C3 AO356_27730 ATP-dependent DNA ligase insig. 43 73
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00864 ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module insig. 47 63
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS15285 DNA ligase D insig. 33 99
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS06915 DNA ligase D insig. 34 97
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01036 DNA ligase D, ligase domain-containing protein no data 66 33
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.140.1 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 39 63
  Sinorhizobium meliloti 1021 SMa0414 hypothetical protein insig. 40 56
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00864 ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module insig. 54 36
  Sinorhizobium meliloti 1021 SM_b21044 ATP-dependent DNA ligase insig. 34 69
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20470 DNA ligase D insig. 32 71
  Pseudomonas stutzeri RCH2 Psest_2150 DNA polymerase LigD, polymerase domain insig. 50 35
  Mycobacterium tuberculosis H37Rv Rv0938 ATP dependent DNA ligase LigD (ATP dependent polydeoxyribonucleotide synthase) (thermostable DNA ligase) (ATP dependent polynucleotide ligase) (sealase) (DNA repair enzyme) (DNA joinase) insig. 35 63
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01037 DNA ligase D, 3'-phosphoesterase domain-containing protein insig. 76 18
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09920 non-homologous end-joining DNA ligase insig. 37 41
  Lysobacter sp. OAE881 ABIE51_RS12790 non-homologous end-joining DNA ligase insig. 40 33
  Rhizobium sp. OAE497 ABIE40_RS27965 non-homologous end-joining DNA ligase insig. 40 37
  Rhodanobacter sp. FW510-T8 OKGIIK_01670 DNA polymerase domain-containing protein insig. 41 34
  Bosea sp. OAE506 ABIE41_RS06590 non-homologous end-joining DNA ligase insig. 40 36
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.140.1 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 39 35
  Agrobacterium fabrum C58 Atu6090 ATP-dependent DNA ligase insig. 37 37
  Agrobacterium fabrum C58 Atu5051 ATP-dependent DNA ligase insig. 39 36
  Agrobacterium fabrum C58 Atu5097 ATP-dependent DNA ligase insig. 35 37
  Sinorhizobium meliloti 1021 SM_b20912 ATP-dependent DNA ligase insig. 38 37
  Sinorhizobium meliloti 1021 SMa0424 ATP-dependent DNA ligase insig. 37 38
  Sphingobium sp. HT1-2 GFF2020 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD cofit 52 19
  Bacteroides ovatus ATCC 8483 BACOVA_04131 DNA ligase D, 3'-phosphoesterase domain protein strong 52 19
  Mycobacterium tuberculosis H37Rv Rv0938 ATP dependent DNA ligase LigD (ATP dependent polydeoxyribonucleotide synthase) (thermostable DNA ligase) (ATP dependent polynucleotide ligase) (sealase) (DNA repair enzyme) (DNA joinase) insig. 35 29
  Mycobacterium tuberculosis H37Rv Rv0269c Conserved hypothetical protein insig. 33 32
  Mycobacterium tuberculosis H37Rv Rv3730c Conserved hypothetical protein insig. 31 34
  Sinorhizobium meliloti 1021 SMa0417 hypothetical protein insig. 41 20
  Variovorax sp. OAS795 ABID97_RS09860 RNA ligase family protein insig. 37 20
  Rhizobium sp. OAE497 ABIE40_RS29190 ATP-dependent DNA ligase insig. 29 37
  Lysobacter sp. OAE881 ABIE51_RS03755 ATP-dependent DNA ligase insig. 32 22
  Sinorhizobium meliloti 1021 SM_b20008 ATP-dependent DNA ligase insig. 27 36
  Variovorax sp. SCN45 GFF3697 ATP-dependent DNA ligase (EC 6.5.1.1) LigC insig. 34 19
  Methanococcus maripaludis S2 MMP_RS05025 ATP-dependent DNA ligase no data 27 34
  Variovorax sp. OAS795 ABID97_RS00390 ATP-dependent DNA ligase insig. 29 35
  Ralstonia sp. UNC404CL21Col ABZR87_RS21355 ATP-dependent DNA ligase insig. 32 21
  Rhizobium sp. OAE497 ABIE40_RS28530 ATP-dependent DNA ligase insig. 27 38
  Phaeobacter inhibens DSM 17395 PGA1_262p00500 putative ATP dependent DNA ligase insig. 30 20
  Methanococcus maripaludis JJ MMJJ_RS00110 ATP-dependent DNA ligase no data 26 34
  Sphingobium sp. HT1-2 GFF105 ATP-dependent DNA ligase (EC 6.5.1.1) LigC cofit 32 20
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04120 cisplatin damage response ATP-dependent DNA ligase insig. 30 22
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01454 DNA ligase insig. 30 19
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21575 ATP-dependent DNA ligase insig. 29 21
  Caulobacter crescentus NA1000 CCNA_03725 ATP-dependent DNA ligase cofit 31 20
  Caulobacter crescentus NA1000 Δfur CCNA_03725 ATP-dependent DNA ligase cofit 31 20
  Mycobacterium tuberculosis H37Rv Rv3731 Possible ATP-dependent DNA ligase LigC (polydeoxyribonucleotide synthase [ATP]) (polynucleotide ligase [ATP]) (sealase) (DNA repair protein) (DNA joinase) insig. 26 32
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3851 DNA ligase, ATP-dependent, PP_1105 family insig. 29 20
  Pseudomonas putida KT2440 PP_1105 putative DNA ligase, ATP-dependent insig. 30 19
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3656.1 ATP-dependent DNA ligase (EC 6.5.1.1) LigC insig. 32 20
  Mycobacterium tuberculosis H37Rv Rv3062 Probable ATP-dependent DNA ligase LigB (polydeoxyribonucleotide synthase [ATP]) (polynucleotide ligase [ATP]) (sealase) (DNA repair protein) (DNA joinase) insig. 27 23
  Sinorhizobium meliloti 1021 SMa0417 hypothetical protein insig. 37 10