Homologs of Psyr_3245 from Pseudomonas syringae pv. syringae B728a

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD
KEGG: DNA ligase (ATP)

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas syringae pv. syringae B728a Psyr_3245 ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module insig. 100 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3245 ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module insig. 100 100
o Pseudomonas sp. S08-1 OH686_01425 DNA ligase D cofit 68 100
o Pseudomonas orientalis W4I3 QF045_RS16850 DNA ligase D insig. 67 100
o Pseudomonas fluorescens SBW25 PFLU_RS14185 DNA ligase D insig. 67 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS14185 DNA ligase D insig. 67 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_03237 Multifunctional non-homologous end joining protein LigD cofit 66 100
o Pseudomonas simiae WCS417 PS417_13125 ATP-dependent DNA ligase insig. 66 100
o Ralstonia sp. UNC404CL21Col ABZR87_RS08115 DNA ligase D insig. 57 100
o Pseudomonas stutzeri RCH2 Psest_2179 DNA ligase D insig. 58 99
o Ralstonia solanacearum PSI07 RPSI07_RS21105 DNA ligase D insig. 56 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4314 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 54 100
o Pseudomonas fluorescens FW300-N2C3 AO356_26950 ATP-dependent DNA ligase insig. 54 100
o Pseudomonas sp. RS175 PFR28_02106 Multifunctional non-homologous end joining protein LigD insig. 53 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1216 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 53 100
o Pseudomonas sp. DMC3 GFF1659 Multifunctional non-homologous end joining protein LigD cofit 53 100
o Pseudomonas aeruginosa MRSN321 DY961_RS16935 ligD;go_process=double-strand DNA ligase D insig. 55 99
o Pseudomonas aeruginosa PA14 IKLFDK_10445 DNA ligase D sig. 55 99
o Pseudomonas aeruginosa PUPa3 DQ20_RS39205 ligD;go_process=double-strand DNA ligase D insig. 55 99
o Pseudomonas sp. BP01 JOY50_RS26485 ligD DNA ligase D insig. 54 100
o Pseudomonas putida KT2440 PP_3260 DNA ligase D insig. 53 100
o Pseudomonas sp. SVBP6 COO64_RS24640 ligD DNA ligase D insig. 53 100
o Paraburkholderia graminis OAS925 ABIE53_002080 bifunctional non-homologous end joining protein LigD insig. 51 99
o Burkholderia phytofirmans PsJN BPHYT_RS09215 ATP-dependent DNA ligase insig. 51 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS22145 DNA ligase D insig. 50 99
o Variovorax sp. SCN45 GFF6242 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 51 99
  Pseudomonas fluorescens FW300-N2C3 AO356_27730 ATP-dependent DNA ligase insig. 63 73
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_797 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 61 76
  Pseudomonas sp. RS175 PFR28_01701 Multifunctional non-homologous end joining protein LigD insig. 62 73
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF111 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 46 99
o Cupriavidus basilensis FW507-4G11 RR42_RS37085 ATP-dependent DNA ligase insig. 45 98
o Herbaspirillum seropedicae SmR1 HSERO_RS11360 DNA ligase insig. 45 98
o Xanthobacter sp. DMC5 GFF242 Multifunctional non-homologous end joining protein LigD insig. 45 97
o Rhizobium sp. OAE497 ABIE40_RS26435 DNA ligase D insig. 44 97
o Bosea sp. OAE506 ABIE41_RS04575 DNA ligase D insig. 44 94
o Sinorhizobium meliloti 1021 SMc03959 hypothetical protein insig. 41 99
o Agrobacterium fabrum C58 Atu4632 ATP-dependent DNA ligase insig. 44 91
  Agrobacterium fabrum C58 Atu5055 ATP-dependent DNA ligase insig. 40 99
  Bosea sp. OAE506 ABIE41_RS06605 DNA ligase D insig. 40 99
  Rhizobium sp. OAE497 ABIE40_RS28460 DNA ligase D insig. 39 99
  Paraburkholderia graminis OAS925 ABIE53_000212 bifunctional non-homologous end joining protein LigD insig. 45 74
  Rhizobium sp. OAE497 ABIE40_RS29525 DNA ligase D insig. 38 99
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06196 ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module insig. 46 72
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS02935 DNA ligase D insig. 40 97
o Sphingobium sp. HT1-2 GFF5134 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD cofit 39 97
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3858 DNA ligase D insig. 39 98
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10580 DNA ligase D insig. 40 99
o Rhodopseudomonas palustris CGA009 TX73_018915 DNA ligase D insig. 39 97
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00864 ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module insig. 50 66
o Lysobacter sp. OAE881 ABIE51_RS12760 DNA ligase D insig. 38 99
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2247.1 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 37 97
  Sinorhizobium meliloti 1021 SM_b20685 hypothetical protein insig. 39 98
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS15285 DNA ligase D insig. 35 97
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS06915 DNA ligase D insig. 35 96
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.140.1 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 43 62
  Sinorhizobium meliloti 1021 SMa0414 hypothetical protein insig. 41 58
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00864 ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module insig. 56 35
  Pseudomonas stutzeri RCH2 Psest_2150 DNA polymerase LigD, polymerase domain insig. 53 33
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20470 DNA ligase D insig. 32 73
  Sinorhizobium meliloti 1021 SM_b21044 ATP-dependent DNA ligase insig. 33 71
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09920 non-homologous end-joining DNA ligase insig. 36 41
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.140.1 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 40 34
  Rhodanobacter sp. FW510-T8 OKGIIK_01670 DNA polymerase domain-containing protein insig. 41 32
  Lysobacter sp. OAE881 ABIE51_RS12790 non-homologous end-joining DNA ligase insig. 38 32
  Agrobacterium fabrum C58 Atu5097 ATP-dependent DNA ligase insig. 38 35
  Bosea sp. OAE506 ABIE41_RS06590 non-homologous end-joining DNA ligase insig. 37 38
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01036 DNA ligase D, ligase domain-containing protein no data 42 33
  Agrobacterium fabrum C58 Atu6090 ATP-dependent DNA ligase insig. 36 36
  Rhizobium sp. OAE497 ABIE40_RS27965 non-homologous end-joining DNA ligase insig. 39 34
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01037 DNA ligase D, 3'-phosphoesterase domain-containing protein insig. 61 18
  Agrobacterium fabrum C58 Atu5051 ATP-dependent DNA ligase insig. 36 34
  Sinorhizobium meliloti 1021 SMa0424 ATP-dependent DNA ligase insig. 35 38
  Sphingobium sp. HT1-2 GFF2020 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD cofit 54 19
  Mycobacterium tuberculosis H37Rv Rv0938 ATP dependent DNA ligase LigD (ATP dependent polydeoxyribonucleotide synthase) (thermostable DNA ligase) (ATP dependent polynucleotide ligase) (sealase) (DNA repair enzyme) (DNA joinase) insig. 38 36
  Sinorhizobium meliloti 1021 SM_b20912 ATP-dependent DNA ligase insig. 36 34
  Bacteroides ovatus ATCC 8483 BACOVA_04131 DNA ligase D, 3'-phosphoesterase domain protein strong 47 20
  Mycobacterium tuberculosis H37Rv Rv3730c Conserved hypothetical protein insig. 34 33
  Mycobacterium tuberculosis H37Rv Rv0938 ATP dependent DNA ligase LigD (ATP dependent polydeoxyribonucleotide synthase) (thermostable DNA ligase) (ATP dependent polynucleotide ligase) (sealase) (DNA repair enzyme) (DNA joinase) insig. 41 20
  Mycobacterium tuberculosis H37Rv Rv0269c Conserved hypothetical protein insig. 30 33
  Mycobacterium tuberculosis H37Rv Rv0938 ATP dependent DNA ligase LigD (ATP dependent polydeoxyribonucleotide synthase) (thermostable DNA ligase) (ATP dependent polynucleotide ligase) (sealase) (DNA repair enzyme) (DNA joinase) insig. 30 28
  Sinorhizobium meliloti 1021 SMa0417 hypothetical protein insig. 33 20
  Variovorax sp. OAS795 ABID97_RS09860 RNA ligase family protein insig. 37 19
  Mycobacterium tuberculosis H37Rv Rv3731 Possible ATP-dependent DNA ligase LigC (polydeoxyribonucleotide synthase [ATP]) (polynucleotide ligase [ATP]) (sealase) (DNA repair protein) (DNA joinase) insig. 27 34
  Mycobacterium tuberculosis H37Rv Rv3062 Probable ATP-dependent DNA ligase LigB (polydeoxyribonucleotide synthase [ATP]) (polynucleotide ligase [ATP]) (sealase) (DNA repair protein) (DNA joinase) insig. 29 26
  Methanococcus maripaludis S2 MMP_RS05025 ATP-dependent DNA ligase no data 24 35
  Sinorhizobium meliloti 1021 SMa0417 hypothetical protein insig. 42 11
  Paraburkholderia sabiae LMG 24235 QEN71_RS43605 DNA ligase insig. 28 19
  Sphingobium sp. HT1-2 GFF105 ATP-dependent DNA ligase (EC 6.5.1.1) LigC cofit 31 26
  Azospirillum brasilense Sp245 AZOBR_RS09960 ATP-dependent DNA ligase insig. 26 34
  Azospirillum sp. SherDot2 MPMX19_02215 DNA ligase insig. 26 34
  Methanococcus maripaludis JJ MMJJ_RS00110 ATP-dependent DNA ligase no data 23 35
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3656.1 ATP-dependent DNA ligase (EC 6.5.1.1) LigC insig. 29 26
  Rhodopseudomonas palustris CGA009 TX73_004135 ATP-dependent DNA ligase insig. 26 35
  Paraburkholderia sabiae LMG 24235 QEN71_RS19200 hypothetical protein insig. 37 11
  Lysobacter sp. OAE881 ABIE51_RS03755 ATP-dependent DNA ligase insig. 29 34
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04120 cisplatin damage response ATP-dependent DNA ligase insig. 26 26
  Rhizobium sp. OAE497 ABIE40_RS29190 ATP-dependent DNA ligase insig. 28 32
  Bosea sp. OAE506 ABIE41_RS24090 cisplatin damage response ATP-dependent DNA ligase insig. 29 26
  Caulobacter crescentus NA1000 CCNA_03725 ATP-dependent DNA ligase cofit 28 26
  Caulobacter crescentus NA1000 Δfur CCNA_03725 ATP-dependent DNA ligase cofit 28 26