| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1158 | | Cyn operon transcriptional activator | insig. | 100 | 100 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_26400 | | LysR family transcriptional regulator | insig. | 96 | 100 |
| o | Pseudomonas sp. RS175 | PFR28_01894 | | HTH-type transcriptional regulator HdfR | insig. | 94 | 98 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_488 | | Cyn operon transcriptional activator | insig. | 91 | 100 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS16795 | | LysR family transcriptional regulator | strong | 67 | 97 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS39080 | | LysR family transcriptional regulator | strong | 67 | 97 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_10320 | | LysR family transcriptional regulator | no data | 67 | 98 |
| o | Pseudomonas simiae WCS417 | PS417_07465 | | LysR family transcriptional regulator | insig. | 67 | 99 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS07550 | | LysR family transcriptional regulator | insig. | 67 | 99 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS07550 | | LysR family transcriptional regulator | strong | 67 | 99 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01626 | | HTH-type transcriptional regulator GltR | cofit | 67 | 96 |
| o | Pseudomonas orientalis W4I3 | QF045_RS10115 | | LysR family transcriptional regulator | insig. | 67 | 96 |
| o | Pseudomonas sp. SVBP6 | COO64_RS22255 | | LysR family transcriptional regulator | insig. | 66 | 96 |
| o | Pseudomonas sp. DMC3 | GFF2325 | | HTH-type transcriptional regulator GltR | cofit | 67 | 95 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3364 | | Cyn operon transcriptional activator | insig. | 65 | 96 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4480 | | Cyn operon transcriptional activator | insig. | 64 | 97 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_17985 | | LysR family transcriptional regulator | sig. | 65 | 96 |
| | Pseudomonas sp. RS175 | PFR28_01891 | | HTH-type transcriptional regulator GltR | strong | 61 | 93 |
| o | Pseudomonas putida KT2440 | PP_4579 | | Transcriptional regulator, LysR family | strong | 61 | 96 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1155 | | Cyn operon transcriptional activator | strong | 59 | 95 |
| o | Pseudomonas sp. BP01 | JOY50_RS01460 | | LysR family transcriptional regulator | insig. | 61 | 96 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_26385 | | LysR family transcriptional regulator | insig. | 57 | 98 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS19340 | | LysR family transcriptional regulator | insig. | 59 | 97 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS05280 | | LysR family transcriptional regulator | insig. | 57 | 97 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS35930 | | LysR family transcriptional regulator | insig. | 41 | 97 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS09175 | | LysR family transcriptional regulator | insig. | 38 | 95 |
| o | Xanthobacter sp. DMC5 | GFF44 | | HTH-type transcriptional regulator GltR | insig. | 37 | 86 |
| o | Variovorax sp. SCN45 | GFF5955 | | Transcriptional regulator, LysR family | insig. | 37 | 80 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS27710 | | LysR family transcriptional regulator | insig. | 37 | 85 |
| | Pseudomonas sp. BP01 | JOY50_RS13610 | | LysR family transcriptional regulator | no data | 31 | 93 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS11470 | | LysR family transcriptional regulator | insig. | 35 | 96 |
| | Marinobacter adhaerens HP15 | HP15_2680 | | protein containing LysR, substrate-binding / Bacterial regulatory protein, LysR | insig. | 33 | 93 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS16615 | | LysR family transcriptional regulator | insig. | 35 | 90 |
| o | Azospirillum sp. SherDot2 | MPMX19_04948 | | HTH-type transcriptional regulator GltR | insig. | 34 | 85 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_159 | | Cyn operon transcriptional activator | sig. | 37 | 90 |
| | Variovorax sp. OAS795 | ABID97_RS19615 | | LysR family transcriptional regulator | no data | 34 | 86 |
| | Paraburkholderia graminis OAS925 | ABIE53_006554 | | DNA-binding transcriptional LysR family regulator | insig. | 34 | 95 |
| | Rhodopseudomonas palustris CGA009 | TX73_008980 | | LysR family transcriptional regulator | insig. | 31 | 92 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS23900 | | LysR family transcriptional regulator | insig. | 34 | 95 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_05275 | | transcriptional regulator, LysR family | insig. | 34 | 97 |
| o | Sinorhizobium meliloti 1021 | SMa0498 | | LysR family transcriptional regulator | insig. | 32 | 92 |
| o | Acinetobacter baumannii LAC-4 | RR41_RS10535 | | LysR family transcriptional regulator MumR | insig. | 29 | 92 |
| o | Sphingobium sp. HT1-2 | GFF355 | | Transcriptional regulator Swit_0960, LysR family | cofit | 26 | 90 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS21070 | | LysR family transcriptional regulator | insig. | 29 | 92 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS21070 | | LysR family transcriptional regulator | sig. | 29 | 92 |
| | Xanthobacter sp. DMC5 | GFF22 | | HTH-type transcriptional regulator HdfR | insig. | 29 | 81 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3151 | | transcriptional regulator, LysR family (RefSeq) | insig. | 27 | 95 |
| | Variovorax sp. SCN45 | GFF620 | | Transcriptional regulator, LysR family | insig. | 28 | 96 |
| | Pseudomonas simiae WCS417 | PS417_19015 | | LysR family transcriptional regulator | insig. | 28 | 92 |
| | Pseudomonas sp. BP01 | JOY50_RS05175 | | LysR family transcriptional regulator | insig. | 26 | 86 |
| | Variovorax sp. SCN45 | GFF6721 | | Transcriptional regulator, LysR family | insig. | 26 | 92 |
| | Variovorax sp. OAS795 | ABID97_RS22240 | | LysR family transcriptional regulator | insig. | 26 | 92 |
| | Variovorax sp. SCN45 | GFF1740 | | Transcriptional regulator, LysR family | insig. | 31 | 81 |
| | Pseudomonas sp. BP01 | JOY50_RS04210 | | LysR family transcriptional regulator | no data | 29 | 84 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_262p00980 | | transcriptional regulator, LysR family | strong | 28 | 80 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0511 | | transcriptional regulator, LysR family (RefSeq) | insig. | 30 | 81 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS06010 | | LysR family transcriptional regulator | insig. | 28 | 91 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS06010 | | LysR family transcriptional regulator | sig. | 28 | 91 |
| | Sinorhizobium meliloti 1021 | SMc00820 | | transcriptional regulator | sig. | 30 | 54 |
| | Pseudomonas sp. S08-1 | OH686_06895 | | Transcriptional regulator, LysR family | insig. | 27 | 91 |
| | Rhizobium sp. OAE497 | ABIE40_RS03500 | | LysR substrate-binding domain-containing protein | strong | 28 | 54 |
| | Pseudomonas simiae WCS417 | PS417_05950 | | LysR family transcriptional regulator | insig. | 27 | 91 |
| | Variovorax sp. OAS795 | ABID97_RS27660 | | LysR family transcriptional regulator | insig. | 29 | 96 |
| | Pseudomonas sp. BP01 | JOY50_RS05240 | | LysR family transcriptional regulator | insig. | 29 | 79 |
| | Ralstonia solanacearum GMI1000 | RS_RS03085 | | LysR family transcriptional regulator | insig. | 33 | 54 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS35310 | | LysR family transcriptional regulator | insig. | 26 | 92 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_19525 | | LysR family transcriptional regulator | insig. | 25 | 92 |
| | Dechlorosoma suillum PS | Dsui_3396 | | transcriptional regulator | insig. | 28 | 77 |
| | Agrobacterium fabrum C58 | Atu0654 | | transcriptional regulator, LysR family | strong | 28 | 54 |
| | Dechlorosoma suillum PS | Dsui_1858 | | transcriptional regulator | insig. | 26 | 93 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01359 | | HTH-type transcriptional regulator GltC | cofit | 28 | 91 |
| | Pectobacterium carotovorum WPP14 | HER17_RS01040 | | HTH-type transcriptional regulator HdfR | sig. | 31 | 54 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_06285 | | LysR family transcriptional regulator | insig. | 28 | 87 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3101 | | LysR family transcriptional regulator lrhA | insig. | 29 | 92 |
| | Bosea sp. OAE506 | ABIE41_RS06340 | | LysR family transcriptional regulator | insig. | 33 | 54 |
| | Azospirillum brasilense Sp245 | AZOBR_RS00870 | | LysR family transcriptional regulator | insig. | 32 | 55 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_1768 | | LysR family transcriptional regulator y2377 (Yersinia pestis KIM) | insig. | 29 | 76 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3125 | | Transcriptional regulators, LysR family | insig. | 27 | 87 |
| | Pseudomonas sp. S08-1 | OH686_10780 | | Transcriptional regulator, LysR family | insig. | 27 | 86 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS04875 | | LysR family transcriptional regulator | insig. | 25 | 77 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS30590 | | LysR family transcriptional regulator | insig. | 33 | 55 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS42170 | | LysR family transcriptional regulator | insig. | 31 | 76 |
| | Pseudomonas sp. BP01 | JOY50_RS13700 | | LysR family transcriptional regulator | insig. | 28 | 80 |
| | Agrobacterium fabrum C58 | Atu3889 | | LysR family transcriptional regulator | insig. | 29 | 81 |
| | Xanthobacter sp. DMC5 | GFF3194 | | HTH-type transcriptional regulator ArgP | insig. | 28 | 87 |
| | Xanthobacter sp. DMC5 | GFF2874 | | Hydrogen peroxide-inducible genes activator | insig. | 27 | 82 |
| | Acinetobacter baumannii LAC-4 | RR41_RS16950 | | DNA-binding transcriptional regulator HcaR | insig. | 27 | 87 |
| | Paraburkholderia graminis OAS925 | ABIE53_006321 | | LysR family nitrogen assimilation transcriptional regulator | insig. | 29 | 94 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_09455 | | LysR family transcriptional regulator | insig. | 25 | 90 |
| | Dickeya dianthicola 67-19 | HGI48_RS20335 | | HTH-type transcriptional regulator HdfR | strong | 30 | 57 |
| | Dickeya dianthicola ME23 | DZA65_RS21375 | | HTH-type transcriptional regulator HdfR | cofit | 30 | 57 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3030 | | Transcriptional regulators, LysR family | insig. | 27 | 91 |
| | Pseudomonas sp. RS175 | PFR28_00349 | | HTH-type transcriptional regulator GltC | insig. | 27 | 87 |
| | Dickeya dadantii 3937 | DDA3937_RS20190 | | HTH-type transcriptional regulator HdfR | insig. | 30 | 57 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF1893 | | LysR family transcriptional regulator lrhA | insig. | 27 | 78 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS07915 | | LysR substrate-binding domain-containing protein | insig. | 29 | 84 |
| | Pseudomonas simiae WCS417 | PS417_17205 | | LysR family transcriptional regulator | insig. | 27 | 80 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS30475 | | LysR family transcriptional regulator | insig. | 24 | 77 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS08165 | | LysR substrate-binding domain-containing protein | insig. | 29 | 84 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_10440 | | LysR family transcriptional regulator | insig. | 23 | 94 |